EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000019357 (Gene tree)
Gene ID: 103038041
Gene Symbol: ddx56
Alias: noh61|zgc:110078
Full Name: DEAD-box helicase 56
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 8883 bases
Position: chr20:2009592-2018474
Accession: 103038041
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000049066	ResIII	PF04851.15	3.2e-08	1	1
ENSAMXP00000019930	ResIII	PF04851.15	3.3e-08	1	1
ENSAMXP00000019930	DEAD	PF00270.29	1.3e-40	1	1
ENSAMXP00000049066	DEAD	PF00270.29	1.4e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000050459	-	1832	-	ENSAMXP00000049066	571 (aa)	-	-
ENSAMXT00000019930	-	1802	XM_022680868	ENSAMXP00000019930	561 (aa)	XP_022536589	W5LJB8

Gene Model

Click here to download ENSAMXG00000019357's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000019357's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000019357	ddx56	79	30.405	ENSAMXG00000010727	ddx47	83	30.405
ENSAMXG00000019357	ddx56	55	30.000	ENSAMXG00000015550	DDX5	69	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000019357	ddx56	99	60.541	ENSG00000136271	DDX56	97	65.193	Homo_sapiens
ENSAMXG00000019357	ddx56	99	77.379	ENSAPOG00000017113	ddx56	99	77.379	Acanthochromis_polyacanthus
ENSAMXG00000019357	ddx56	99	60.784	ENSAMEG00000017711	DDX56	99	60.963	Ailuropoda_melanoleuca
ENSAMXG00000019357	ddx56	96	65.863	ENSACIG00000013747	ddx56	99	79.121	Amphilophus_citrinellus
ENSAMXG00000019357	ddx56	90	79.563	ENSAOCG00000018059	ddx56	94	79.324	Amphiprion_ocellaris
ENSAMXG00000019357	ddx56	88	79.472	ENSAOCG00000015447	-	88	79.226	Amphiprion_ocellaris
ENSAMXG00000019357	ddx56	99	76.429	ENSAPEG00000007267	ddx56	99	75.893	Amphiprion_percula
ENSAMXG00000019357	ddx56	99	77.518	ENSATEG00000005279	ddx56	99	76.978	Anabas_testudineus
ENSAMXG00000019357	ddx56	99	74.327	ENSACLG00000020113	ddx56	99	74.327	Astatotilapia_calliptera
ENSAMXG00000019357	ddx56	99	61.221	ENSBTAG00000010602	DDX56	98	60.503	Bos_taurus
ENSAMXG00000019357	ddx56	97	39.568	WBGene00016073	C24H12.4	86	39.029	Caenorhabditis_elegans
ENSAMXG00000019357	ddx56	99	60.606	ENSCJAG00000012233	DDX56	99	60.428	Callithrix_jacchus
ENSAMXG00000019357	ddx56	82	57.701	ENSCAFG00000029295	DDX56	99	58.134	Canis_familiaris
ENSAMXG00000019357	ddx56	99	58.824	ENSCAFG00020019695	DDX56	93	63.439	Canis_lupus_dingo
ENSAMXG00000019357	ddx56	99	61.580	ENSCHIG00000014261	DDX56	98	60.682	Capra_hircus
ENSAMXG00000019357	ddx56	99	61.141	ENSTSYG00000008048	DDX56	99	60.963	Carlito_syrichta
ENSAMXG00000019357	ddx56	86	61.111	ENSCAPG00000006286	DDX56	98	60.581	Cavia_aperea
ENSAMXG00000019357	ddx56	99	62.389	ENSCPOG00000003359	DDX56	98	61.939	Cavia_porcellus
ENSAMXG00000019357	ddx56	99	60.428	ENSCCAG00000025303	DDX56	99	59.715	Cebus_capucinus
ENSAMXG00000019357	ddx56	99	61.081	ENSCATG00000039389	DDX56	98	60.180	Cercocebus_atys
ENSAMXG00000019357	ddx56	99	61.676	ENSCLAG00000007666	DDX56	99	59.895	Chinchilla_lanigera
ENSAMXG00000019357	ddx56	99	60.901	ENSCSAG00000015636	DDX56	98	60.360	Chlorocebus_sabaeus
ENSAMXG00000019357	ddx56	98	65.580	ENSCPBG00000024556	DDX56	97	64.855	Chrysemys_picta_bellii
ENSAMXG00000019357	ddx56	90	61.373	ENSCING00000005185	-	98	61.373	Ciona_intestinalis
ENSAMXG00000019357	ddx56	89	59.687	ENSCSAVG00000011266	-	99	59.363	Ciona_savignyi
ENSAMXG00000019357	ddx56	99	60.753	ENSCANG00000028187	DDX56	99	60.215	Colobus_angolensis_palliatus
ENSAMXG00000019357	ddx56	99	61.802	ENSCGRG00001019019	Ddx56	98	60.901	Cricetulus_griseus_chok1gshd
ENSAMXG00000019357	ddx56	99	61.802	ENSCGRG00000011870	Ddx56	98	60.901	Cricetulus_griseus_crigri
ENSAMXG00000019357	ddx56	99	73.665	ENSCSEG00000008368	ddx56	99	73.535	Cynoglossus_semilaevis
ENSAMXG00000019357	ddx56	99	76.481	ENSCVAG00000006499	ddx56	99	76.302	Cyprinodon_variegatus
ENSAMXG00000019357	ddx56	99	77.117	ENSDARG00000020913	ddx56	99	76.744	Danio_rerio
ENSAMXG00000019357	ddx56	86	59.336	ENSDNOG00000036526	DDX56	97	58.506	Dasypus_novemcinctus
ENSAMXG00000019357	ddx56	99	49.911	FBgn0001565	Hlc	98	49.911	Drosophila_melanogaster
ENSAMXG00000019357	ddx56	86	43.154	ENSETEG00000019559	-	99	42.531	Echinops_telfairi
ENSAMXG00000019357	ddx56	74	53.976	ENSETEG00000002969	-	64	72.222	Echinops_telfairi
ENSAMXG00000019357	ddx56	98	64.260	ENSEBUG00000009986	ddx56	99	63.899	Eptatretus_burgeri
ENSAMXG00000019357	ddx56	91	63.725	ENSEASG00005017795	DDX56	98	59.640	Equus_asinus_asinus
ENSAMXG00000019357	ddx56	91	63.725	ENSECAG00000019897	DDX56	98	59.640	Equus_caballus
ENSAMXG00000019357	ddx56	86	59.959	ENSEEUG00000004849	DDX56	98	58.921	Erinaceus_europaeus
ENSAMXG00000019357	ddx56	99	76.661	ENSELUG00000004150	ddx56	99	76.481	Esox_lucius
ENSAMXG00000019357	ddx56	99	60.606	ENSFCAG00000010261	DDX56	99	59.715	Felis_catus
ENSAMXG00000019357	ddx56	99	60.000	ENSFDAG00000007128	DDX56	99	59.474	Fukomys_damarensis
ENSAMXG00000019357	ddx56	99	74.327	ENSFHEG00000018008	ddx56	96	79.125	Fundulus_heteroclitus
ENSAMXG00000019357	ddx56	99	69.120	ENSGAFG00000006906	ddx56	98	72.053	Gambusia_affinis
ENSAMXG00000019357	ddx56	92	68.340	ENSGAGG00000006789	DDX56	89	68.369	Gopherus_agassizii
ENSAMXG00000019357	ddx56	99	60.541	ENSGGOG00000012031	DDX56	98	60.180	Gorilla_gorilla
ENSAMXG00000019357	ddx56	97	69.982	ENSHBUG00000015246	ddx56	97	69.982	Haplochromis_burtoni
ENSAMXG00000019357	ddx56	99	60.784	ENSHGLG00000017271	DDX56	99	59.720	Heterocephalus_glaber_female
ENSAMXG00000019357	ddx56	99	60.784	ENSHGLG00100015731	DDX56	99	59.720	Heterocephalus_glaber_male
ENSAMXG00000019357	ddx56	99	72.695	ENSHCOG00000001685	ddx56	99	72.193	Hippocampus_comes
ENSAMXG00000019357	ddx56	99	80.505	ENSIPUG00000006602	ddx56	97	80.505	Ictalurus_punctatus
ENSAMXG00000019357	ddx56	99	60.606	ENSSTOG00000000464	DDX56	99	59.715	Ictidomys_tridecemlineatus
ENSAMXG00000019357	ddx56	99	60.893	ENSJJAG00000014269	Ddx56	99	60.568	Jaculus_jaculus
ENSAMXG00000019357	ddx56	99	76.122	ENSKMAG00000016611	ddx56	99	75.763	Kryptolebias_marmoratus
ENSAMXG00000019357	ddx56	99	75.313	ENSLBEG00000026281	ddx56	99	75.134	Labrus_bergylta
ENSAMXG00000019357	ddx56	99	68.953	ENSLACG00000015551	DDX56	96	69.189	Latimeria_chalumnae
ENSAMXG00000019357	ddx56	99	76.827	ENSLOCG00000015185	ddx56	99	76.827	Lepisosteus_oculatus
ENSAMXG00000019357	ddx56	99	60.606	ENSLAFG00000018206	DDX56	99	60.357	Loxodonta_africana
ENSAMXG00000019357	ddx56	99	61.081	ENSMFAG00000041001	DDX56	98	60.180	Macaca_fascicularis
ENSAMXG00000019357	ddx56	99	60.862	ENSMMUG00000002645	DDX56	98	59.964	Macaca_mulatta
ENSAMXG00000019357	ddx56	99	61.081	ENSMNEG00000028492	DDX56	98	60.180	Macaca_nemestrina
ENSAMXG00000019357	ddx56	99	60.901	ENSMLEG00000043591	DDX56	98	60.000	Mandrillus_leucophaeus
ENSAMXG00000019357	ddx56	99	75.269	ENSMAMG00000007776	ddx56	99	74.731	Mastacembelus_armatus
ENSAMXG00000019357	ddx56	99	74.327	ENSMZEG00005009813	ddx56	99	74.327	Maylandia_zebra
ENSAMXG00000019357	ddx56	99	61.676	ENSMICG00000005550	DDX56	99	61.141	Microcebus_murinus
ENSAMXG00000019357	ddx56	99	61.622	ENSMOCG00000016782	Ddx56	98	60.180	Microtus_ochrogaster
ENSAMXG00000019357	ddx56	94	77.143	ENSMMOG00000009654	ddx56	95	79.722	Mola_mola
ENSAMXG00000019357	ddx56	99	57.576	ENSMODG00000016137	DDX56	98	57.041	Monodelphis_domestica
ENSAMXG00000019357	ddx56	68	71.503	ENSMALG00000016910	ddx56	99	71.503	Monopterus_albus
ENSAMXG00000019357	ddx56	99	60.360	MGP_CAROLIEiJ_G0016069	Ddx56	97	64.919	Mus_caroli
ENSAMXG00000019357	ddx56	99	59.857	ENSMUSG00000004393	Ddx56	97	64.516	Mus_musculus
ENSAMXG00000019357	ddx56	99	60.000	MGP_PahariEiJ_G0016822	Ddx56	97	64.372	Mus_pahari
ENSAMXG00000019357	ddx56	99	59.857	MGP_SPRETEiJ_G0016911	Ddx56	97	64.516	Mus_spretus
ENSAMXG00000019357	ddx56	99	60.784	ENSMPUG00000018196	DDX56	87	60.428	Mustela_putorius_furo
ENSAMXG00000019357	ddx56	99	60.391	ENSMLUG00000003509	DDX56	99	60.036	Myotis_lucifugus
ENSAMXG00000019357	ddx56	99	61.802	ENSNGAG00000018785	Ddx56	98	60.721	Nannospalax_galili
ENSAMXG00000019357	ddx56	96	70.370	ENSNBRG00000002656	ddx56	97	70.926	Neolamprologus_brichardi
ENSAMXG00000019357	ddx56	99	61.261	ENSNLEG00000003816	DDX56	98	61.081	Nomascus_leucogenys
ENSAMXG00000019357	ddx56	90	59.881	ENSMEUG00000006788	DDX56	100	59.486	Notamacropus_eugenii
ENSAMXG00000019357	ddx56	99	59.425	ENSOPRG00000000292	-	98	59.425	Ochotona_princeps
ENSAMXG00000019357	ddx56	68	64.935	ENSODEG00000014807	DDX56	100	64.156	Octodon_degus
ENSAMXG00000019357	ddx56	99	72.172	ENSONIG00000011509	ddx56	99	72.531	Oreochromis_niloticus
ENSAMXG00000019357	ddx56	50	61.290	ENSOANG00000010592	-	99	61.290	Ornithorhynchus_anatinus
ENSAMXG00000019357	ddx56	96	54.360	ENSOANG00000006320	-	79	71.380	Ornithorhynchus_anatinus
ENSAMXG00000019357	ddx56	72	54.988	ENSOANG00000015987	-	94	54.988	Ornithorhynchus_anatinus
ENSAMXG00000019357	ddx56	99	61.319	ENSOCUG00000022918	DDX56	99	60.963	Oryctolagus_cuniculus
ENSAMXG00000019357	ddx56	99	73.609	ENSORLG00000001434	ddx56	99	73.429	Oryzias_latipes
ENSAMXG00000019357	ddx56	99	73.297	ENSORLG00020015718	ddx56	96	73.118	Oryzias_latipes_hni
ENSAMXG00000019357	ddx56	99	73.609	ENSORLG00015003004	ddx56	95	73.429	Oryzias_latipes_hsok
ENSAMXG00000019357	ddx56	99	73.429	ENSOMEG00000022072	ddx56	99	73.250	Oryzias_melastigma
ENSAMXG00000019357	ddx56	99	60.963	ENSOGAG00000009981	DDX56	99	60.963	Otolemur_garnettii
ENSAMXG00000019357	ddx56	99	61.580	ENSOARG00000015240	DDX56	98	60.682	Ovis_aries
ENSAMXG00000019357	ddx56	99	51.681	ENSPPAG00000031263	-	99	51.150	Pan_paniscus
ENSAMXG00000019357	ddx56	99	58.156	ENSPPAG00000029147	DDX56	98	57.801	Pan_paniscus
ENSAMXG00000019357	ddx56	99	61.141	ENSPPRG00000014594	DDX56	99	60.071	Panthera_pardus
ENSAMXG00000019357	ddx56	96	49.074	ENSPTIG00000019500	DDX56	90	57.054	Panthera_tigris_altaica
ENSAMXG00000019357	ddx56	94	50.749	ENSPTRG00000052765	-	99	51.873	Pan_troglodytes
ENSAMXG00000019357	ddx56	99	60.541	ENSPTRG00000019147	DDX56	98	60.180	Pan_troglodytes
ENSAMXG00000019357	ddx56	99	61.261	ENSPANG00000002446	DDX56	98	60.360	Papio_anubis
ENSAMXG00000019357	ddx56	99	76.122	ENSPKIG00000018998	ddx56	98	75.943	Paramormyrops_kingsleyae
ENSAMXG00000019357	ddx56	96	76.536	ENSPMGG00000017421	ddx56	99	76.164	Periophthalmus_magnuspinnatus
ENSAMXG00000019357	ddx56	99	63.074	ENSPCIG00000009336	DDX56	98	62.014	Phascolarctos_cinereus
ENSAMXG00000019357	ddx56	99	74.686	ENSPFOG00000018658	ddx56	99	74.865	Poecilia_formosa
ENSAMXG00000019357	ddx56	99	74.865	ENSPLAG00000019208	ddx56	99	75.045	Poecilia_latipinna
ENSAMXG00000019357	ddx56	99	74.686	ENSPMEG00000001775	ddx56	99	74.865	Poecilia_mexicana
ENSAMXG00000019357	ddx56	99	75.583	ENSPREG00000015142	ddx56	99	75.045	Poecilia_reticulata
ENSAMXG00000019357	ddx56	99	60.901	ENSPPYG00000017591	DDX56	98	60.541	Pongo_abelii
ENSAMXG00000019357	ddx56	96	62.063	ENSPCAG00000011499	DDX56	99	61.326	Procavia_capensis
ENSAMXG00000019357	ddx56	99	60.963	ENSPCOG00000024864	DDX56	99	60.606	Propithecus_coquereli
ENSAMXG00000019357	ddx56	89	67.442	ENSPVAG00000000791	DDX56	88	67.442	Pteropus_vampyrus
ENSAMXG00000019357	ddx56	99	74.147	ENSPNYG00000019212	ddx56	99	74.147	Pundamilia_nyererei
ENSAMXG00000019357	ddx56	99	83.333	ENSPNAG00000025446	ddx56	99	82.975	Pygocentrus_nattereri
ENSAMXG00000019357	ddx56	99	60.250	ENSRNOG00000004670	Ddx56	98	59.677	Rattus_norvegicus
ENSAMXG00000019357	ddx56	99	60.901	ENSRBIG00000030140	DDX56	98	60.360	Rhinopithecus_bieti
ENSAMXG00000019357	ddx56	99	60.721	ENSRROG00000044428	DDX56	98	60.180	Rhinopithecus_roxellana
ENSAMXG00000019357	ddx56	98	44.123	YLR276C	-	96	45.359	Saccharomyces_cerevisiae
ENSAMXG00000019357	ddx56	99	60.250	ENSSBOG00000034339	DDX56	99	60.071	Saimiri_boliviensis_boliviensis
ENSAMXG00000019357	ddx56	86	62.370	ENSSHAG00000016615	DDX56	97	61.746	Sarcophilus_harrisii
ENSAMXG00000019357	ddx56	99	73.882	ENSSFOG00015012795	ddx56	99	73.345	Scleropages_formosus
ENSAMXG00000019357	ddx56	99	76.744	ENSSMAG00000011280	ddx56	99	78.108	Scophthalmus_maximus
ENSAMXG00000019357	ddx56	99	77.061	ENSSDUG00000023597	ddx56	99	77.419	Seriola_dumerili
ENSAMXG00000019357	ddx56	99	77.061	ENSSLDG00000018369	ddx56	99	77.419	Seriola_lalandi_dorsalis
ENSAMXG00000019357	ddx56	70	76.271	ENSSARG00000014363	DDX56	78	70.000	Sorex_araneus
ENSAMXG00000019357	ddx56	99	66.011	ENSSPUG00000000784	DDX56	96	65.116	Sphenodon_punctatus
ENSAMXG00000019357	ddx56	96	77.840	ENSSPAG00000009392	ddx56	99	77.654	Stegastes_partitus
ENSAMXG00000019357	ddx56	98	61.372	ENSSSCG00000016745	DDX56	98	60.830	Sus_scrofa
ENSAMXG00000019357	ddx56	99	75.887	ENSTRUG00000018623	ddx56	99	75.045	Takifugu_rubripes
ENSAMXG00000019357	ddx56	99	75.044	ENSTNIG00000013593	ddx56	99	74.377	Tetraodon_nigroviridis
ENSAMXG00000019357	ddx56	99	60.862	ENSTBEG00000007119	DDX56	98	60.503	Tupaia_belangeri
ENSAMXG00000019357	ddx56	78	62.557	ENSTTRG00000010552	DDX56	98	58.299	Tursiops_truncatus
ENSAMXG00000019357	ddx56	99	60.784	ENSUAMG00000014194	DDX56	99	60.963	Ursus_americanus
ENSAMXG00000019357	ddx56	99	60.784	ENSUMAG00000009666	DDX56	99	60.963	Ursus_maritimus
ENSAMXG00000019357	ddx56	92	62.863	ENSVVUG00000011905	DDX56	99	59.893	Vulpes_vulpes
ENSAMXG00000019357	ddx56	99	68.459	ENSXETG00000019000	ddx56	99	68.996	Xenopus_tropicalis
ENSAMXG00000019357	ddx56	99	71.993	ENSXCOG00000017413	ddx56	98	73.496	Xiphophorus_couchianus
ENSAMXG00000019357	ddx56	99	75.943	ENSXMAG00000018749	ddx56	99	75.404	Xiphophorus_maculatus