EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000019370 (Gene tree)
Gene ID: 103022720
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 51311 bases
Position: chrAPWO02000036.1:1198361-1249671
Accession: 103022720
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000019953	XRN_N	PF03159.18	1.6e-86	1	1
ENSAMXP00000054059	XRN_N	PF03159.18	4e-44	1	1
ENSAMXP00000046062	XRN_N	PF03159.18	2e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000048049	-	327	-	ENSAMXP00000054059	108 (aa)	-	-
ENSAMXT00000036501	-	1443	-	ENSAMXP00000046062	480 (aa)	-	-
ENSAMXT00000019953	-	4953	XM_022668314	ENSAMXP00000019953	1650 (aa)	XP_022524035	W5LJE1

Gene Model

Click here to download ENSAMXG00000019370's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03008	Ribosome biogenesis in eukaryotes	KEGG
amex03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000019370's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000019370	xrn1	95	53.279	ENSAMXG00000018301	xrn2	59	47.260

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000019370	xrn1	100	91.667	ENSG00000114127	XRN1	100	91.667	Homo_sapiens
ENSAMXG00000019370	xrn1	95	98.058	ENSAPOG00000000622	xrn1	93	76.522	Acanthochromis_polyacanthus
ENSAMXG00000019370	xrn1	95	94.175	ENSAMEG00000012538	XRN1	99	59.886	Ailuropoda_melanoleuca
ENSAMXG00000019370	xrn1	95	96.117	ENSACIG00000001057	xrn1	98	75.899	Amphilophus_citrinellus
ENSAMXG00000019370	xrn1	95	98.058	ENSAOCG00000014097	xrn1	100	70.122	Amphiprion_ocellaris
ENSAMXG00000019370	xrn1	95	98.058	ENSAPEG00000006620	xrn1	99	71.599	Amphiprion_percula
ENSAMXG00000019370	xrn1	95	97.087	ENSATEG00000009752	xrn1	100	73.395	Anabas_testudineus
ENSAMXG00000019370	xrn1	72	96.154	ENSAPLG00000004905	XRN1	100	60.692	Anas_platyrhynchos
ENSAMXG00000019370	xrn1	95	95.146	ENSACAG00000004985	XRN1	99	59.741	Anolis_carolinensis
ENSAMXG00000019370	xrn1	96	93.269	ENSANAG00000029013	XRN1	99	72.046	Aotus_nancymaae
ENSAMXG00000019370	xrn1	95	97.087	ENSACLG00000004806	xrn1	99	68.235	Astatotilapia_calliptera
ENSAMXG00000019370	xrn1	95	94.175	ENSBTAG00000011524	XRN1	99	60.149	Bos_taurus
ENSAMXG00000019370	xrn1	94	80.392	WBGene00012730	xrn-1	74	61.394	Caenorhabditis_elegans
ENSAMXG00000019370	xrn1	96	93.269	ENSCJAG00000001872	XRN1	98	62.819	Callithrix_jacchus
ENSAMXG00000019370	xrn1	95	94.175	ENSCAFG00000007783	XRN1	99	60.445	Canis_familiaris
ENSAMXG00000019370	xrn1	95	94.175	ENSCAFG00020009120	XRN1	99	72.063	Canis_lupus_dingo
ENSAMXG00000019370	xrn1	96	93.269	ENSCHIG00000019192	XRN1	99	60.842	Capra_hircus
ENSAMXG00000019370	xrn1	95	94.175	ENSTSYG00000002705	XRN1	99	60.797	Carlito_syrichta
ENSAMXG00000019370	xrn1	72	93.590	ENSCAPG00000004604	-	99	58.319	Cavia_aperea
ENSAMXG00000019370	xrn1	95	94.175	ENSCPOG00000035199	-	100	94.175	Cavia_porcellus
ENSAMXG00000019370	xrn1	96	93.269	ENSCCAG00000034800	XRN1	99	74.286	Cebus_capucinus
ENSAMXG00000019370	xrn1	96	93.269	ENSCATG00000041794	XRN1	99	60.894	Cercocebus_atys
ENSAMXG00000019370	xrn1	95	94.175	ENSCLAG00000001451	XRN1	99	73.968	Chinchilla_lanigera
ENSAMXG00000019370	xrn1	96	93.269	ENSCSAG00000011265	XRN1	99	60.308	Chlorocebus_sabaeus
ENSAMXG00000019370	xrn1	71	93.506	ENSCHOG00000013961	-	52	93.506	Choloepus_hoffmanni
ENSAMXG00000019370	xrn1	95	87.379	ENSCING00000001334	-	95	70.190	Ciona_intestinalis
ENSAMXG00000019370	xrn1	95	87.379	ENSCSAVG00000008584	-	94	48.998	Ciona_savignyi
ENSAMXG00000019370	xrn1	96	93.269	ENSCANG00000037495	XRN1	99	74.127	Colobus_angolensis_palliatus
ENSAMXG00000019370	xrn1	95	94.175	ENSCGRG00001019411	Xrn1	99	73.810	Cricetulus_griseus_chok1gshd
ENSAMXG00000019370	xrn1	95	94.175	ENSCGRG00000012464	Xrn1	99	73.810	Cricetulus_griseus_crigri
ENSAMXG00000019370	xrn1	95	98.058	ENSCSEG00000021285	xrn1	94	97.115	Cynoglossus_semilaevis
ENSAMXG00000019370	xrn1	95	97.087	ENSCVAG00000013089	xrn1	99	77.019	Cyprinodon_variegatus
ENSAMXG00000019370	xrn1	95	98.058	ENSDARG00000091652	xrn1	100	77.138	Danio_rerio
ENSAMXG00000019370	xrn1	95	93.204	ENSDNOG00000034202	-	100	93.204	Dasypus_novemcinctus
ENSAMXG00000019370	xrn1	95	89.320	ENSDORG00000013833	Xrn1	99	60.319	Dipodomys_ordii
ENSAMXG00000019370	xrn1	95	69.903	FBgn0020261	pcm	72	39.489	Drosophila_melanogaster
ENSAMXG00000019370	xrn1	72	93.590	ENSETEG00000003978	XRN1	88	74.380	Echinops_telfairi
ENSAMXG00000019370	xrn1	96	93.269	ENSEASG00005002687	XRN1	99	74.127	Equus_asinus_asinus
ENSAMXG00000019370	xrn1	96	93.269	ENSECAG00000008301	XRN1	99	60.344	Equus_caballus
ENSAMXG00000019370	xrn1	95	94.175	ENSEEUG00000011323	XRN1	83	76.573	Erinaceus_europaeus
ENSAMXG00000019370	xrn1	95	98.058	ENSELUG00000000169	xrn1	100	72.245	Esox_lucius
ENSAMXG00000019370	xrn1	95	94.175	ENSFCAG00000027589	XRN1	91	78.947	Felis_catus
ENSAMXG00000019370	xrn1	95	93.204	ENSFALG00000007021	XRN1	96	71.073	Ficedula_albicollis
ENSAMXG00000019370	xrn1	95	94.175	ENSFDAG00000020494	XRN1	99	73.810	Fukomys_damarensis
ENSAMXG00000019370	xrn1	98	66.320	ENSFHEG00000017356	-	98	67.368	Fundulus_heteroclitus
ENSAMXG00000019370	xrn1	95	97.087	ENSFHEG00000017255	-	100	97.087	Fundulus_heteroclitus
ENSAMXG00000019370	xrn1	95	96.117	ENSGMOG00000006396	xrn1	88	71.370	Gadus_morhua
ENSAMXG00000019370	xrn1	95	94.175	ENSGALG00000002706	XRN1	100	60.702	Gallus_gallus
ENSAMXG00000019370	xrn1	95	96.117	ENSGAFG00000006293	-	100	96.117	Gambusia_affinis
ENSAMXG00000019370	xrn1	95	98.058	ENSGACG00000014328	xrn1	100	66.177	Gasterosteus_aculeatus
ENSAMXG00000019370	xrn1	95	92.233	ENSGAGG00000017535	XRN1	99	62.943	Gopherus_agassizii
ENSAMXG00000019370	xrn1	96	93.269	ENSGGOG00000008047	XRN1	99	60.842	Gorilla_gorilla
ENSAMXG00000019370	xrn1	95	97.087	ENSHBUG00000005908	xrn1	99	67.719	Haplochromis_burtoni
ENSAMXG00000019370	xrn1	95	94.175	ENSHGLG00000014476	XRN1	99	74.127	Heterocephalus_glaber_female
ENSAMXG00000019370	xrn1	95	94.175	ENSHGLG00100015130	XRN1	99	74.127	Heterocephalus_glaber_male
ENSAMXG00000019370	xrn1	97	96.190	ENSHCOG00000013992	-	90	98.058	Hippocampus_comes
ENSAMXG00000019370	xrn1	95	98.058	ENSHCOG00000014062	xrn1	99	74.550	Hippocampus_comes
ENSAMXG00000019370	xrn1	95	99.029	ENSIPUG00000015229	xrn1	100	77.187	Ictalurus_punctatus
ENSAMXG00000019370	xrn1	95	94.175	ENSSTOG00000013552	XRN1	99	73.968	Ictidomys_tridecemlineatus
ENSAMXG00000019370	xrn1	95	70.737	ENSJJAG00000010863	Xrn1	99	72.168	Jaculus_jaculus
ENSAMXG00000019370	xrn1	95	96.117	ENSKMAG00000021356	xrn1	94	72.436	Kryptolebias_marmoratus
ENSAMXG00000019370	xrn1	95	98.058	ENSLBEG00000018656	xrn1	97	98.058	Labrus_bergylta
ENSAMXG00000019370	xrn1	95	96.117	ENSLACG00000009020	XRN1	99	63.537	Latimeria_chalumnae
ENSAMXG00000019370	xrn1	95	98.058	ENSLOCG00000007944	xrn1	100	68.818	Lepisosteus_oculatus
ENSAMXG00000019370	xrn1	95	94.175	ENSLAFG00000015426	XRN1	99	71.656	Loxodonta_africana
ENSAMXG00000019370	xrn1	96	93.269	ENSMFAG00000032599	XRN1	99	60.837	Macaca_fascicularis
ENSAMXG00000019370	xrn1	96	93.269	ENSMMUG00000014038	XRN1	99	60.837	Macaca_mulatta
ENSAMXG00000019370	xrn1	96	93.269	ENSMNEG00000034217	XRN1	99	60.722	Macaca_nemestrina
ENSAMXG00000019370	xrn1	95	94.175	ENSMLEG00000041349	-	91	79.616	Mandrillus_leucophaeus
ENSAMXG00000019370	xrn1	95	97.087	ENSMAMG00000013219	xrn1	99	74.903	Mastacembelus_armatus
ENSAMXG00000019370	xrn1	95	97.087	ENSMZEG00005015099	xrn1	99	68.177	Maylandia_zebra
ENSAMXG00000019370	xrn1	74	95.000	ENSMGAG00000006333	XRN1	99	60.198	Meleagris_gallopavo
ENSAMXG00000019370	xrn1	97	93.333	ENSMAUG00000014268	-	99	93.333	Mesocricetus_auratus
ENSAMXG00000019370	xrn1	100	91.667	ENSMICG00000048948	XRN1	100	91.667	Microcebus_murinus
ENSAMXG00000019370	xrn1	95	94.175	ENSMOCG00000008665	Xrn1	99	73.651	Microtus_ochrogaster
ENSAMXG00000019370	xrn1	93	69.828	ENSMMOG00000020896	-	96	64.771	Mola_mola
ENSAMXG00000019370	xrn1	95	94.175	ENSMODG00000021236	XRN1	99	60.710	Monodelphis_domestica
ENSAMXG00000019370	xrn1	95	97.087	ENSMALG00000004098	xrn1	100	66.471	Monopterus_albus
ENSAMXG00000019370	xrn1	95	94.175	MGP_CAROLIEiJ_G0032535	Xrn1	100	95.000	Mus_caroli
ENSAMXG00000019370	xrn1	95	94.175	ENSMUSG00000032410	Xrn1	100	95.000	Mus_musculus
ENSAMXG00000019370	xrn1	95	94.175	MGP_PahariEiJ_G0015404	Xrn1	100	95.000	Mus_pahari
ENSAMXG00000019370	xrn1	95	94.175	MGP_SPRETEiJ_G0033678	Xrn1	100	95.000	Mus_spretus
ENSAMXG00000019370	xrn1	95	94.175	ENSMPUG00000012040	XRN1	99	60.788	Mustela_putorius_furo
ENSAMXG00000019370	xrn1	95	94.175	ENSMLUG00000016885	XRN1	99	59.396	Myotis_lucifugus
ENSAMXG00000019370	xrn1	95	93.204	ENSNGAG00000023964	Xrn1	99	71.290	Nannospalax_galili
ENSAMXG00000019370	xrn1	95	97.087	ENSNBRG00000001531	-	99	97.087	Neolamprologus_brichardi
ENSAMXG00000019370	xrn1	96	93.269	ENSNLEG00000004726	XRN1	99	60.436	Nomascus_leucogenys
ENSAMXG00000019370	xrn1	90	94.845	ENSMEUG00000014473	-	66	95.146	Notamacropus_eugenii
ENSAMXG00000019370	xrn1	95	95.146	ENSOPRG00000007337	-	72	71.324	Ochotona_princeps
ENSAMXG00000019370	xrn1	95	94.175	ENSODEG00000008804	-	100	94.175	Octodon_degus
ENSAMXG00000019370	xrn1	95	97.087	ENSONIG00000016673	xrn1	99	71.166	Oreochromis_niloticus
ENSAMXG00000019370	xrn1	88	69.161	ENSOANG00000006735	XRN1	93	66.609	Ornithorhynchus_anatinus
ENSAMXG00000019370	xrn1	95	95.146	ENSOCUG00000001861	XRN1	99	59.977	Oryctolagus_cuniculus
ENSAMXG00000019370	xrn1	95	98.058	ENSORLG00000013005	xrn1	98	68.645	Oryzias_latipes
ENSAMXG00000019370	xrn1	95	98.058	ENSORLG00020005559	xrn1	100	68.586	Oryzias_latipes_hni
ENSAMXG00000019370	xrn1	95	98.058	ENSORLG00015022523	xrn1	100	68.390	Oryzias_latipes_hsok
ENSAMXG00000019370	xrn1	95	98.058	ENSOMEG00000015397	xrn1	99	76.206	Oryzias_melastigma
ENSAMXG00000019370	xrn1	95	94.175	ENSOGAG00000000170	XRN1	99	58.739	Otolemur_garnettii
ENSAMXG00000019370	xrn1	95	94.175	ENSOARG00000006343	XRN1	99	60.399	Ovis_aries
ENSAMXG00000019370	xrn1	96	92.308	ENSPPAG00000010180	XRN1	99	60.877	Pan_paniscus
ENSAMXG00000019370	xrn1	95	94.175	ENSPPRG00000007125	XRN1	99	61.012	Panthera_pardus
ENSAMXG00000019370	xrn1	95	94.175	ENSPTIG00000021081	XRN1	99	60.571	Panthera_tigris_altaica
ENSAMXG00000019370	xrn1	96	92.308	ENSPTRG00000015482	XRN1	99	60.935	Pan_troglodytes
ENSAMXG00000019370	xrn1	96	93.269	ENSPANG00000010638	XRN1	99	60.780	Papio_anubis
ENSAMXG00000019370	xrn1	95	98.058	ENSPKIG00000011903	-	79	98.058	Paramormyrops_kingsleyae
ENSAMXG00000019370	xrn1	95	92.233	ENSPSIG00000018050	XRN1	100	60.991	Pelodiscus_sinensis
ENSAMXG00000019370	xrn1	95	98.058	ENSPMGG00000002648	xrn1	99	78.550	Periophthalmus_magnuspinnatus
ENSAMXG00000019370	xrn1	95	94.175	ENSPEMG00000020610	Xrn1	99	73.810	Peromyscus_maniculatus_bairdii
ENSAMXG00000019370	xrn1	75	88.889	ENSPMAG00000002975	xrn1	87	75.862	Petromyzon_marinus
ENSAMXG00000019370	xrn1	95	95.146	ENSPCIG00000028735	XRN1	99	74.444	Phascolarctos_cinereus
ENSAMXG00000019370	xrn1	95	97.087	ENSPFOG00000013932	xrn1	99	70.505	Poecilia_formosa
ENSAMXG00000019370	xrn1	95	97.087	ENSPLAG00000021653	xrn1	99	70.860	Poecilia_latipinna
ENSAMXG00000019370	xrn1	95	97.087	ENSPMEG00000003076	xrn1	95	70.961	Poecilia_mexicana
ENSAMXG00000019370	xrn1	95	97.087	ENSPREG00000021147	xrn1	100	68.260	Poecilia_reticulata
ENSAMXG00000019370	xrn1	96	93.269	ENSPPYG00000014172	XRN1	99	60.421	Pongo_abelii
ENSAMXG00000019370	xrn1	95	71.247	ENSPCAG00000005638	XRN1	92	75.137	Procavia_capensis
ENSAMXG00000019370	xrn1	95	94.175	ENSPCOG00000013089	XRN1	99	73.651	Propithecus_coquereli
ENSAMXG00000019370	xrn1	95	94.175	ENSPVAG00000016265	XRN1	91	68.626	Pteropus_vampyrus
ENSAMXG00000019370	xrn1	95	97.087	ENSPNYG00000010570	xrn1	99	68.256	Pundamilia_nyererei
ENSAMXG00000019370	xrn1	95	100.000	ENSPNAG00000023531	xrn1	100	81.721	Pygocentrus_nattereri
ENSAMXG00000019370	xrn1	95	94.175	ENSRNOG00000042951	Xrn1	99	60.276	Rattus_norvegicus
ENSAMXG00000019370	xrn1	96	93.269	ENSRBIG00000041227	XRN1	99	60.403	Rhinopithecus_bieti
ENSAMXG00000019370	xrn1	95	94.175	ENSRROG00000033764	-	100	94.175	Rhinopithecus_roxellana
ENSAMXG00000019370	xrn1	95	64.078	YGL173C	XRN1	70	50.949	Saccharomyces_cerevisiae
ENSAMXG00000019370	xrn1	96	93.269	ENSSBOG00000029561	XRN1	99	61.118	Saimiri_boliviensis_boliviensis
ENSAMXG00000019370	xrn1	72	94.872	ENSSHAG00000016207	XRN1	99	59.756	Sarcophilus_harrisii
ENSAMXG00000019370	xrn1	95	98.058	ENSSFOG00015024211	xrn1	100	70.184	Scleropages_formosus
ENSAMXG00000019370	xrn1	95	98.058	ENSSMAG00000016534	xrn1	99	74.345	Scophthalmus_maximus
ENSAMXG00000019370	xrn1	95	98.058	ENSSDUG00000010306	xrn1	98	77.414	Seriola_dumerili
ENSAMXG00000019370	xrn1	95	98.058	ENSSLDG00000021543	xrn1	99	75.562	Seriola_lalandi_dorsalis
ENSAMXG00000019370	xrn1	95	71.579	ENSSARG00000007741	-	81	65.773	Sorex_araneus
ENSAMXG00000019370	xrn1	97	70.208	ENSSPUG00000010779	-	95	72.669	Sphenodon_punctatus
ENSAMXG00000019370	xrn1	95	94.175	ENSSPUG00000010754	-	100	94.175	Sphenodon_punctatus
ENSAMXG00000019370	xrn1	99	72.600	ENSSPAG00000009856	-	96	74.291	Stegastes_partitus
ENSAMXG00000019370	xrn1	95	92.233	ENSTGUG00000008498	XRN1	100	61.716	Taeniopygia_guttata
ENSAMXG00000019370	xrn1	96	94.231	ENSTRUG00000004895	xrn1	97	73.885	Takifugu_rubripes
ENSAMXG00000019370	xrn1	94	96.078	ENSTNIG00000017615	xrn1	100	63.468	Tetraodon_nigroviridis
ENSAMXG00000019370	xrn1	95	94.175	ENSTBEG00000003256	XRN1	84	81.748	Tupaia_belangeri
ENSAMXG00000019370	xrn1	95	87.379	ENSTTRG00000012914	XRN1	99	56.741	Tursiops_truncatus
ENSAMXG00000019370	xrn1	96	93.269	ENSUAMG00000001608	XRN1	99	72.536	Ursus_americanus
ENSAMXG00000019370	xrn1	95	94.175	ENSUMAG00000013625	XRN1	99	60.423	Ursus_maritimus
ENSAMXG00000019370	xrn1	95	94.175	ENSVPAG00000004690	XRN1	99	58.223	Vicugna_pacos
ENSAMXG00000019370	xrn1	96	93.269	ENSVVUG00000024461	XRN1	98	84.615	Vulpes_vulpes
ENSAMXG00000019370	xrn1	95	97.087	ENSXETG00000000619	xrn1	97	83.333	Xenopus_tropicalis
ENSAMXG00000019370	xrn1	95	97.087	ENSXCOG00000007917	xrn1	100	66.453	Xiphophorus_couchianus
ENSAMXG00000019370	xrn1	95	97.087	ENSXMAG00000018320	xrn1	99	75.632	Xiphophorus_maculatus