EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000019489 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 4022 bases
Position: chrAPWO02000052.1:1194467-1198488
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000020068	zf-C2H2	PF00096.26	2.8e-39	1	6
ENSAMXP00000020068	zf-C2H2	PF00096.26	2.8e-39	2	6
ENSAMXP00000020068	zf-C2H2	PF00096.26	2.8e-39	3	6
ENSAMXP00000020068	zf-C2H2	PF00096.26	2.8e-39	4	6
ENSAMXP00000020068	zf-C2H2	PF00096.26	2.8e-39	5	6
ENSAMXP00000020068	zf-C2H2	PF00096.26	2.8e-39	6	6
ENSAMXP00000020068	zf-met	PF12874.7	1.1e-07	1	2
ENSAMXP00000020068	zf-met	PF12874.7	1.1e-07	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000020069	-	693	-	ENSAMXP00000020068	230 (aa)	-	W5LJQ6

Gene Model

Click here to download ENSAMXG00000019489's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000019489's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000019489	-	95	56.354	ENSAMXG00000043019	-	92	56.354
ENSAMXG00000019489	-	93	59.162	ENSAMXG00000030742	-	99	59.162
ENSAMXG00000019489	-	96	61.658	ENSAMXG00000042275	-	93	61.658
ENSAMXG00000019489	-	93	65.152	ENSAMXG00000041725	-	91	65.152
ENSAMXG00000019489	-	95	64.497	ENSAMXG00000009558	-	94	64.497
ENSAMXG00000019489	-	93	67.500	ENSAMXG00000035690	-	72	67.500
ENSAMXG00000019489	-	94	60.513	ENSAMXG00000037760	-	98	60.513
ENSAMXG00000019489	-	93	65.497	ENSAMXG00000025965	-	94	65.497
ENSAMXG00000019489	-	96	62.564	ENSAMXG00000040630	-	98	65.217
ENSAMXG00000019489	-	97	58.621	ENSAMXG00000003002	-	92	58.621
ENSAMXG00000019489	-	86	58.974	ENSAMXG00000043978	-	88	58.974
ENSAMXG00000019489	-	93	59.259	ENSAMXG00000038905	-	89	59.259
ENSAMXG00000019489	-	96	59.574	ENSAMXG00000037923	-	99	59.574
ENSAMXG00000019489	-	95	60.690	ENSAMXG00000032212	-	87	60.690
ENSAMXG00000019489	-	93	51.592	ENSAMXG00000034333	-	86	54.737
ENSAMXG00000019489	-	95	62.914	ENSAMXG00000037143	-	95	62.914
ENSAMXG00000019489	-	93	61.026	ENSAMXG00000035920	-	94	61.026
ENSAMXG00000019489	-	96	68.667	ENSAMXG00000031900	-	96	68.667
ENSAMXG00000019489	-	95	64.865	ENSAMXG00000039879	-	98	64.865
ENSAMXG00000019489	-	94	62.016	ENSAMXG00000029178	-	98	62.016
ENSAMXG00000019489	-	86	58.163	ENSAMXG00000039700	-	91	58.462
ENSAMXG00000019489	-	95	66.864	ENSAMXG00000044028	-	95	62.366
ENSAMXG00000019489	-	91	61.988	ENSAMXG00000039004	-	88	61.988
ENSAMXG00000019489	-	95	58.462	ENSAMXG00000029960	-	95	58.462
ENSAMXG00000019489	-	87	55.556	ENSAMXG00000034344	-	86	53.030
ENSAMXG00000019489	-	93	59.893	ENSAMXG00000035437	-	99	59.893
ENSAMXG00000019489	-	93	59.487	ENSAMXG00000009776	-	95	59.487
ENSAMXG00000019489	-	87	42.308	ENSAMXG00000038235	snai2	53	42.308
ENSAMXG00000019489	-	93	52.381	ENSAMXG00000033252	-	95	52.381
ENSAMXG00000019489	-	96	42.282	ENSAMXG00000034934	-	92	42.282
ENSAMXG00000019489	-	91	31.373	ENSAMXG00000016921	znf341	52	31.373
ENSAMXG00000019489	-	93	57.923	ENSAMXG00000029109	-	87	57.923
ENSAMXG00000019489	-	93	61.053	ENSAMXG00000031794	-	96	61.053
ENSAMXG00000019489	-	89	57.576	ENSAMXG00000035683	-	94	57.576
ENSAMXG00000019489	-	93	56.923	ENSAMXG00000031844	-	92	56.923
ENSAMXG00000019489	-	93	56.489	ENSAMXG00000032841	-	75	56.489
ENSAMXG00000019489	-	97	55.897	ENSAMXG00000038284	-	97	55.897
ENSAMXG00000019489	-	96	56.716	ENSAMXG00000012604	-	98	56.716
ENSAMXG00000019489	-	95	58.462	ENSAMXG00000033201	-	94	58.462
ENSAMXG00000019489	-	95	64.497	ENSAMXG00000029878	-	93	64.497
ENSAMXG00000019489	-	93	57.292	ENSAMXG00000042784	-	94	58.772
ENSAMXG00000019489	-	93	65.789	ENSAMXG00000043251	-	95	65.789
ENSAMXG00000019489	-	97	43.258	ENSAMXG00000035246	-	82	43.258
ENSAMXG00000019489	-	93	58.947	ENSAMXG00000010078	-	86	58.947
ENSAMXG00000019489	-	94	63.077	ENSAMXG00000040212	-	86	63.077
ENSAMXG00000019489	-	89	57.754	ENSAMXG00000039408	-	93	57.754
ENSAMXG00000019489	-	93	60.317	ENSAMXG00000032619	-	98	60.317
ENSAMXG00000019489	-	87	56.989	ENSAMXG00000043291	-	65	56.989
ENSAMXG00000019489	-	91	56.757	ENSAMXG00000042167	-	86	56.757
ENSAMXG00000019489	-	85	57.500	ENSAMXG00000040677	-	85	55.897
ENSAMXG00000019489	-	93	62.434	ENSAMXG00000001626	-	97	62.434
ENSAMXG00000019489	-	95	64.103	ENSAMXG00000036567	-	76	64.103
ENSAMXG00000019489	-	87	44.393	ENSAMXG00000041862	-	95	44.393
ENSAMXG00000019489	-	92	58.788	ENSAMXG00000041861	-	90	59.259
ENSAMXG00000019489	-	96	42.478	ENSAMXG00000041864	prdm5	86	42.478
ENSAMXG00000019489	-	94	60.106	ENSAMXG00000041865	-	97	60.106
ENSAMXG00000019489	-	92	62.564	ENSAMXG00000043423	-	78	62.564
ENSAMXG00000019489	-	93	60.989	ENSAMXG00000034958	-	93	60.989
ENSAMXG00000019489	-	86	56.593	ENSAMXG00000029161	-	82	56.593
ENSAMXG00000019489	-	94	63.636	ENSAMXG00000011804	-	86	63.636
ENSAMXG00000019489	-	94	62.564	ENSAMXG00000041128	-	88	62.564
ENSAMXG00000019489	-	94	60.000	ENSAMXG00000034402	-	92	60.000
ENSAMXG00000019489	-	95	59.893	ENSAMXG00000017959	-	98	59.893
ENSAMXG00000019489	-	85	61.832	ENSAMXG00000033124	-	55	61.832
ENSAMXG00000019489	-	96	50.000	ENSAMXG00000012589	-	85	50.568
ENSAMXG00000019489	-	95	70.175	ENSAMXG00000037703	-	86	70.175
ENSAMXG00000019489	-	93	59.459	ENSAMXG00000037709	-	79	59.459
ENSAMXG00000019489	-	94	63.077	ENSAMXG00000007092	-	98	63.077
ENSAMXG00000019489	-	93	66.887	ENSAMXG00000042774	-	93	66.887
ENSAMXG00000019489	-	95	66.258	ENSAMXG00000039162	-	95	66.258
ENSAMXG00000019489	-	93	48.824	ENSAMXG00000014745	-	82	50.307
ENSAMXG00000019489	-	95	57.241	ENSAMXG00000012873	-	96	57.241
ENSAMXG00000019489	-	95	67.586	ENSAMXG00000008613	-	96	67.586
ENSAMXG00000019489	-	95	61.538	ENSAMXG00000041404	-	96	61.421
ENSAMXG00000019489	-	95	62.766	ENSAMXG00000038636	-	98	62.766
ENSAMXG00000019489	-	92	42.727	ENSAMXG00000001155	si:dkey-89b17.4	64	38.462
ENSAMXG00000019489	-	89	63.483	ENSAMXG00000039977	-	91	63.483
ENSAMXG00000019489	-	94	61.780	ENSAMXG00000018161	-	95	61.780
ENSAMXG00000019489	-	98	60.000	ENSAMXG00000036915	-	94	60.000
ENSAMXG00000019489	-	95	59.174	ENSAMXG00000031489	-	92	59.174
ENSAMXG00000019489	-	85	68.627	ENSAMXG00000039744	-	99	68.627
ENSAMXG00000019489	-	83	57.838	ENSAMXG00000030963	-	64	57.838
ENSAMXG00000019489	-	88	45.652	ENSAMXG00000037382	-	52	45.652
ENSAMXG00000019489	-	82	37.748	ENSAMXG00000002273	patz1	50	37.748
ENSAMXG00000019489	-	93	34.815	ENSAMXG00000005882	znf131	52	30.556
ENSAMXG00000019489	-	96	62.500	ENSAMXG00000013274	-	94	62.500
ENSAMXG00000019489	-	96	56.923	ENSAMXG00000032237	-	98	56.923
ENSAMXG00000019489	-	96	55.319	ENSAMXG00000033299	-	70	55.319
ENSAMXG00000019489	-	95	63.590	ENSAMXG00000024978	-	97	63.590
ENSAMXG00000019489	-	99	57.692	ENSAMXG00000039182	-	66	57.692
ENSAMXG00000019489	-	93	55.189	ENSAMXG00000036241	-	89	55.189
ENSAMXG00000019489	-	93	59.709	ENSAMXG00000039432	-	95	59.709
ENSAMXG00000019489	-	94	56.771	ENSAMXG00000034096	-	86	56.771
ENSAMXG00000019489	-	97	61.026	ENSAMXG00000041975	-	82	61.026
ENSAMXG00000019489	-	93	55.941	ENSAMXG00000042746	-	88	57.436
ENSAMXG00000019489	-	93	56.281	ENSAMXG00000036257	-	93	56.281
ENSAMXG00000019489	-	94	58.929	ENSAMXG00000035875	-	99	58.929
ENSAMXG00000019489	-	93	43.541	ENSAMXG00000042191	zbtb47a	74	43.541
ENSAMXG00000019489	-	95	63.889	ENSAMXG00000031501	-	88	63.889
ENSAMXG00000019489	-	93	57.059	ENSAMXG00000037717	-	94	57.059
ENSAMXG00000019489	-	85	55.696	ENSAMXG00000038122	-	97	55.696
ENSAMXG00000019489	-	93	63.077	ENSAMXG00000025452	-	96	63.077
ENSAMXG00000019489	-	93	62.051	ENSAMXG00000025455	-	98	62.051
ENSAMXG00000019489	-	87	58.763	ENSAMXG00000029518	-	57	58.763
ENSAMXG00000019489	-	93	60.674	ENSAMXG00000039752	-	88	60.674
ENSAMXG00000019489	-	86	62.766	ENSAMXG00000033500	-	99	62.766
ENSAMXG00000019489	-	90	54.286	ENSAMXG00000007973	-	91	46.821
ENSAMXG00000019489	-	95	66.667	ENSAMXG00000035809	-	99	66.667
ENSAMXG00000019489	-	89	53.670	ENSAMXG00000038325	-	94	54.011
ENSAMXG00000019489	-	93	57.949	ENSAMXG00000038324	-	86	57.949
ENSAMXG00000019489	-	93	63.030	ENSAMXG00000037326	-	92	63.030
ENSAMXG00000019489	-	91	57.463	ENSAMXG00000036633	-	65	59.259
ENSAMXG00000019489	-	97	62.564	ENSAMXG00000030911	-	68	62.564
ENSAMXG00000019489	-	93	60.847	ENSAMXG00000038453	-	82	60.847
ENSAMXG00000019489	-	92	39.456	ENSAMXG00000025761	-	87	39.456
ENSAMXG00000019489	-	87	42.609	ENSAMXG00000006669	GFI1	54	42.609
ENSAMXG00000019489	-	94	57.949	ENSAMXG00000040806	-	90	57.949
ENSAMXG00000019489	-	96	57.059	ENSAMXG00000041650	-	98	57.059
ENSAMXG00000019489	-	93	57.500	ENSAMXG00000041721	-	83	57.500
ENSAMXG00000019489	-	88	58.182	ENSAMXG00000033013	-	87	58.128
ENSAMXG00000019489	-	85	60.825	ENSAMXG00000004610	-	98	60.825
ENSAMXG00000019489	-	97	58.791	ENSAMXG00000039016	-	80	58.791
ENSAMXG00000019489	-	90	52.451	ENSAMXG00000044107	-	88	52.451
ENSAMXG00000019489	-	86	68.293	ENSAMXG00000043302	-	72	68.293
ENSAMXG00000019489	-	93	61.538	ENSAMXG00000026142	-	90	61.538
ENSAMXG00000019489	-	96	56.383	ENSAMXG00000026143	-	99	56.383
ENSAMXG00000019489	-	96	54.502	ENSAMXG00000026144	-	95	54.502
ENSAMXG00000019489	-	90	43.284	ENSAMXG00000034873	-	81	43.284
ENSAMXG00000019489	-	97	57.949	ENSAMXG00000036849	-	80	57.949
ENSAMXG00000019489	-	93	60.104	ENSAMXG00000041609	-	91	60.104
ENSAMXG00000019489	-	94	61.538	ENSAMXG00000034847	-	88	61.538
ENSAMXG00000019489	-	93	59.659	ENSAMXG00000010805	-	95	59.659
ENSAMXG00000019489	-	96	56.477	ENSAMXG00000042174	-	93	56.477
ENSAMXG00000019489	-	94	39.474	ENSAMXG00000029059	-	62	39.474
ENSAMXG00000019489	-	93	63.953	ENSAMXG00000010930	-	83	63.953
ENSAMXG00000019489	-	93	65.789	ENSAMXG00000017609	-	78	65.789
ENSAMXG00000019489	-	86	46.667	ENSAMXG00000044096	-	79	46.667
ENSAMXG00000019489	-	95	41.071	ENSAMXG00000035525	znf646	71	41.071
ENSAMXG00000019489	-	89	44.615	ENSAMXG00000007441	-	57	44.615
ENSAMXG00000019489	-	86	59.398	ENSAMXG00000037981	-	78	59.398
ENSAMXG00000019489	-	93	59.487	ENSAMXG00000042938	-	90	59.487
ENSAMXG00000019489	-	99	62.051	ENSAMXG00000036762	-	98	62.051
ENSAMXG00000019489	-	93	59.701	ENSAMXG00000044110	-	89	59.701
ENSAMXG00000019489	-	84	54.639	ENSAMXG00000043541	-	81	54.639
ENSAMXG00000019489	-	96	57.558	ENSAMXG00000042633	-	93	56.410
ENSAMXG00000019489	-	94	51.748	ENSAMXG00000034857	-	67	51.748
ENSAMXG00000019489	-	86	41.414	ENSAMXG00000039622	zbtb41	51	41.414
ENSAMXG00000019489	-	90	37.143	ENSAMXG00000033001	-	51	37.143
ENSAMXG00000019489	-	95	54.872	ENSAMXG00000038280	-	92	54.872
ENSAMXG00000019489	-	95	64.744	ENSAMXG00000037885	-	97	64.744
ENSAMXG00000019489	-	93	61.140	ENSAMXG00000029828	-	98	61.140
ENSAMXG00000019489	-	96	55.941	ENSAMXG00000009563	-	97	55.941
ENSAMXG00000019489	-	95	40.580	ENSAMXG00000024907	znf319b	84	40.580
ENSAMXG00000019489	-	94	56.682	ENSAMXG00000035145	-	64	56.682
ENSAMXG00000019489	-	93	60.106	ENSAMXG00000042593	-	92	60.106
ENSAMXG00000019489	-	97	63.077	ENSAMXG00000000353	-	95	63.077
ENSAMXG00000019489	-	93	51.852	ENSAMXG00000035127	-	93	51.852
ENSAMXG00000019489	-	94	50.754	ENSAMXG00000043178	-	72	50.754
ENSAMXG00000019489	-	95	59.794	ENSAMXG00000031646	-	95	63.333
ENSAMXG00000019489	-	99	49.180	ENSAMXG00000013492	-	99	49.180
ENSAMXG00000019489	-	95	66.000	ENSAMXG00000035949	-	74	66.000
ENSAMXG00000019489	-	94	60.000	ENSAMXG00000030530	-	99	60.000
ENSAMXG00000019489	-	93	62.903	ENSAMXG00000031009	-	86	62.903
ENSAMXG00000019489	-	83	41.748	ENSAMXG00000039849	snai1b	56	41.748
ENSAMXG00000019489	-	89	59.777	ENSAMXG00000031307	-	60	59.777
ENSAMXG00000019489	-	94	56.897	ENSAMXG00000029783	-	87	56.897
ENSAMXG00000019489	-	96	56.410	ENSAMXG00000039770	-	85	56.410
ENSAMXG00000019489	-	90	40.476	ENSAMXG00000044034	-	63	40.476
ENSAMXG00000019489	-	94	61.310	ENSAMXG00000031496	-	99	61.310
ENSAMXG00000019489	-	93	66.111	ENSAMXG00000032457	-	92	66.111
ENSAMXG00000019489	-	94	47.205	ENSAMXG00000035286	si:ch1073-224n8.1	89	43.367
ENSAMXG00000019489	-	93	56.287	ENSAMXG00000030659	-	76	56.287
ENSAMXG00000019489	-	93	57.426	ENSAMXG00000038536	-	88	57.949
ENSAMXG00000019489	-	93	59.487	ENSAMXG00000036233	-	78	59.487

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000019489	-	95	53.886	ENSAPLG00000012660	-	81	53.886	Anas_platyrhynchos
ENSAMXG00000019489	-	95	54.167	ENSEASG00005020341	-	96	54.167	Equus_asinus_asinus
ENSAMXG00000019489	-	97	54.011	ENSECAG00000039445	-	94	54.011	Equus_caballus
ENSAMXG00000019489	-	95	54.167	ENSECAG00000017293	-	96	54.167	Equus_caballus
ENSAMXG00000019489	-	96	55.556	ENSGAGG00000008773	-	86	53.299	Gopherus_agassizii
ENSAMXG00000019489	-	96	52.356	ENSGAGG00000019349	-	76	53.535	Gopherus_agassizii
ENSAMXG00000019489	-	91	58.084	ENSGAGG00000009739	-	99	53.247	Gopherus_agassizii
ENSAMXG00000019489	-	93	54.211	ENSGAGG00000006960	-	79	54.211	Gopherus_agassizii
ENSAMXG00000019489	-	93	53.299	ENSGAGG00000000971	-	92	53.299	Gopherus_agassizii
ENSAMXG00000019489	-	93	60.000	ENSGAGG00000004740	-	92	56.489	Gopherus_agassizii
ENSAMXG00000019489	-	96	53.889	ENSGAGG00000017986	-	91	54.450	Gopherus_agassizii
ENSAMXG00000019489	-	93	59.091	ENSGAGG00000006683	-	87	59.091	Gopherus_agassizii
ENSAMXG00000019489	-	97	53.883	ENSGAGG00000011574	-	80	53.883	Gopherus_agassizii
ENSAMXG00000019489	-	93	54.902	ENSGAGG00000015451	-	83	54.494	Gopherus_agassizii
ENSAMXG00000019489	-	91	64.804	ENSIPUG00000015400	-	96	64.804	Ictalurus_punctatus
ENSAMXG00000019489	-	87	57.292	ENSIPUG00000015177	-	53	57.292	Ictalurus_punctatus
ENSAMXG00000019489	-	93	56.627	ENSMPUG00000008437	-	89	56.627	Mustela_putorius_furo
ENSAMXG00000019489	-	96	57.143	ENSPTIG00000009259	-	97	57.143	Panthera_tigris_altaica
ENSAMXG00000019489	-	93	53.061	ENSPSIG00000016247	-	53	53.061	Pelodiscus_sinensis
ENSAMXG00000019489	-	93	60.825	ENSPNAG00000012366	-	88	60.825	Pygocentrus_nattereri
ENSAMXG00000019489	-	93	60.513	ENSPNAG00000017479	-	85	60.513	Pygocentrus_nattereri
ENSAMXG00000019489	-	93	63.077	ENSPNAG00000003526	-	83	63.077	Pygocentrus_nattereri
ENSAMXG00000019489	-	85	57.051	ENSPNAG00000008653	-	97	57.292	Pygocentrus_nattereri
ENSAMXG00000019489	-	86	53.535	ENSPNAG00000029386	-	90	51.174	Pygocentrus_nattereri
ENSAMXG00000019489	-	87	61.000	ENSPNAG00000024704	-	99	61.000	Pygocentrus_nattereri
ENSAMXG00000019489	-	93	57.672	ENSPNAG00000000783	-	90	57.672	Pygocentrus_nattereri
ENSAMXG00000019489	-	86	60.119	ENSPNAG00000021942	-	91	60.119	Pygocentrus_nattereri
ENSAMXG00000019489	-	96	62.051	ENSPNAG00000002287	-	90	62.051	Pygocentrus_nattereri
ENSAMXG00000019489	-	94	63.452	ENSPNAG00000018437	-	79	63.452	Pygocentrus_nattereri
ENSAMXG00000019489	-	96	65.089	ENSPNAG00000016025	-	96	65.089	Pygocentrus_nattereri
ENSAMXG00000019489	-	90	62.827	ENSPNAG00000003919	-	96	62.827	Pygocentrus_nattereri
ENSAMXG00000019489	-	93	64.362	ENSPNAG00000028765	-	86	64.362	Pygocentrus_nattereri
ENSAMXG00000019489	-	96	60.109	ENSPNAG00000016045	-	74	60.109	Pygocentrus_nattereri
ENSAMXG00000019489	-	87	63.717	ENSPNAG00000017455	-	81	63.717	Pygocentrus_nattereri
ENSAMXG00000019489	-	93	62.766	ENSPNAG00000018471	-	77	62.766	Pygocentrus_nattereri
ENSAMXG00000019489	-	94	60.947	ENSPNAG00000007072	-	89	60.947	Pygocentrus_nattereri
ENSAMXG00000019489	-	90	63.077	ENSPNAG00000005914	-	75	63.077	Pygocentrus_nattereri
ENSAMXG00000019489	-	87	61.579	ENSPNAG00000012138	-	93	61.579	Pygocentrus_nattereri
ENSAMXG00000019489	-	95	53.158	ENSUAMG00000027384	-	87	53.158	Ursus_americanus
ENSAMXG00000019489	-	95	57.059	ENSUAMG00000027415	-	86	57.059	Ursus_americanus
ENSAMXG00000019489	-	93	57.527	ENSVPAG00000002698	-	99	57.527	Vicugna_pacos