EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000019802 (Gene tree)
Gene ID: 103042140
Gene Symbol: rpusd1
Alias: fe26f08|wu:fe26f08|zgc:153465
Full Name: RNA pseudouridine synthase domain containing 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 6069 bases
Position: chrAPWO02000681.1:290703-296771
Accession: 103042140
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000020391	PseudoU_synth_2	PF00849.22	1.2e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000020391	-	1131	XM_007241560	ENSAMXP00000020391	295 (aa)	XP_007241622	W5LKM9

Gene Model

Click here to download ENSAMXG00000019802's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000019802's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000019802	rpusd1	100	56.688	ENSG00000007376	RPUSD1	100	66.071	Homo_sapiens
ENSAMXG00000019802	rpusd1	99	67.987	ENSAPOG00000022221	rpusd1	99	69.637	Acanthochromis_polyacanthus
ENSAMXG00000019802	rpusd1	100	61.204	ENSAMEG00000007461	RPUSD1	99	61.204	Ailuropoda_melanoleuca
ENSAMXG00000019802	rpusd1	99	66.990	ENSACIG00000015863	rpusd1	99	67.101	Amphilophus_citrinellus
ENSAMXG00000019802	rpusd1	99	66.667	ENSAOCG00000021975	rpusd1	96	67.427	Amphiprion_ocellaris
ENSAMXG00000019802	rpusd1	99	66.993	ENSAPEG00000001316	rpusd1	96	67.752	Amphiprion_percula
ENSAMXG00000019802	rpusd1	99	65.359	ENSATEG00000002984	rpusd1	99	67.427	Anabas_testudineus
ENSAMXG00000019802	rpusd1	77	59.664	ENSAPLG00000012316	RPUSD1	98	59.664	Anas_platyrhynchos
ENSAMXG00000019802	rpusd1	99	63.087	ENSACAG00000008953	RPUSD1	99	63.087	Anolis_carolinensis
ENSAMXG00000019802	rpusd1	100	57.006	ENSANAG00000024709	RPUSD1	99	57.508	Aotus_nancymaae
ENSAMXG00000019802	rpusd1	99	67.097	ENSACLG00000013692	rpusd1	99	69.481	Astatotilapia_calliptera
ENSAMXG00000019802	rpusd1	100	61.967	ENSBTAG00000000179	RPUSD1	99	61.438	Bos_taurus
ENSAMXG00000019802	rpusd1	100	57.643	ENSCJAG00000012253	RPUSD1	99	56.825	Callithrix_jacchus
ENSAMXG00000019802	rpusd1	100	60.066	ENSCAFG00000019614	RPUSD1	99	60.396	Canis_familiaris
ENSAMXG00000019802	rpusd1	100	60.066	ENSCAFG00020008891	RPUSD1	99	60.396	Canis_lupus_dingo
ENSAMXG00000019802	rpusd1	100	60.703	ENSCHIG00000012872	RPUSD1	99	61.765	Capra_hircus
ENSAMXG00000019802	rpusd1	100	58.940	ENSTSYG00000036934	RPUSD1	99	58.940	Carlito_syrichta
ENSAMXG00000019802	rpusd1	100	58.746	ENSCAPG00000014219	RPUSD1	99	58.746	Cavia_aperea
ENSAMXG00000019802	rpusd1	100	58.746	ENSCPOG00000034604	RPUSD1	99	58.746	Cavia_porcellus
ENSAMXG00000019802	rpusd1	100	57.325	ENSCCAG00000034385	RPUSD1	99	57.827	Cebus_capucinus
ENSAMXG00000019802	rpusd1	100	58.252	ENSCATG00000042983	RPUSD1	99	58.252	Cercocebus_atys
ENSAMXG00000019802	rpusd1	100	58.086	ENSCLAG00000013966	RPUSD1	99	58.086	Chinchilla_lanigera
ENSAMXG00000019802	rpusd1	100	57.643	ENSCSAG00000012121	RPUSD1	99	57.605	Chlorocebus_sabaeus
ENSAMXG00000019802	rpusd1	99	61.589	ENSCPBG00000021101	RPUSD1	99	61.589	Chrysemys_picta_bellii
ENSAMXG00000019802	rpusd1	85	64.173	ENSCANG00000028576	RPUSD1	90	64.173	Colobus_angolensis_palliatus
ENSAMXG00000019802	rpusd1	100	59.333	ENSCGRG00001014253	Rpusd1	99	59.333	Cricetulus_griseus_chok1gshd
ENSAMXG00000019802	rpusd1	100	59.333	ENSCGRG00000017995	Rpusd1	99	59.333	Cricetulus_griseus_crigri
ENSAMXG00000019802	rpusd1	99	67.918	ENSCSEG00000018512	rpusd1	99	67.918	Cynoglossus_semilaevis
ENSAMXG00000019802	rpusd1	99	67.442	ENSCVAG00000022746	rpusd1	99	67.442	Cyprinodon_variegatus
ENSAMXG00000019802	rpusd1	100	73.220	ENSDARG00000060192	rpusd1	100	73.220	Danio_rerio
ENSAMXG00000019802	rpusd1	100	58.361	ENSDNOG00000003721	RPUSD1	99	59.016	Dasypus_novemcinctus
ENSAMXG00000019802	rpusd1	100	59.539	ENSDORG00000026656	Rpusd1	99	60.333	Dipodomys_ordii
ENSAMXG00000019802	rpusd1	97	47.115	ENSEBUG00000008767	rpusd1	92	47.115	Eptatretus_burgeri
ENSAMXG00000019802	rpusd1	100	57.827	ENSEASG00005018421	RPUSD1	75	57.508	Equus_asinus_asinus
ENSAMXG00000019802	rpusd1	100	66.013	ENSELUG00000014307	rpusd1	89	66.340	Esox_lucius
ENSAMXG00000019802	rpusd1	100	59.333	ENSFCAG00000010359	RPUSD1	99	59.333	Felis_catus
ENSAMXG00000019802	rpusd1	100	62.667	ENSFALG00000003211	RPUSD1	100	62.667	Ficedula_albicollis
ENSAMXG00000019802	rpusd1	100	58.746	ENSFDAG00000013398	RPUSD1	99	58.746	Fukomys_damarensis
ENSAMXG00000019802	rpusd1	99	67.105	ENSFHEG00000004736	rpusd1	99	67.763	Fundulus_heteroclitus
ENSAMXG00000019802	rpusd1	99	62.500	ENSGMOG00000010756	rpusd1	98	63.036	Gadus_morhua
ENSAMXG00000019802	rpusd1	100	63.158	ENSGALG00000005315	RPUSD1	100	63.158	Gallus_gallus
ENSAMXG00000019802	rpusd1	99	69.767	ENSGAFG00000009886	rpusd1	99	69.767	Gambusia_affinis
ENSAMXG00000019802	rpusd1	99	68.197	ENSGACG00000014276	rpusd1	98	69.180	Gasterosteus_aculeatus
ENSAMXG00000019802	rpusd1	99	60.596	ENSGAGG00000004181	RPUSD1	99	60.596	Gopherus_agassizii
ENSAMXG00000019802	rpusd1	100	57.006	ENSGGOG00000013997	RPUSD1	99	57.605	Gorilla_gorilla
ENSAMXG00000019802	rpusd1	99	67.097	ENSHBUG00000023728	rpusd1	99	69.481	Haplochromis_burtoni
ENSAMXG00000019802	rpusd1	100	57.980	ENSHGLG00000002595	RPUSD1	99	58.416	Heterocephalus_glaber_female
ENSAMXG00000019802	rpusd1	100	57.980	ENSHGLG00100014303	RPUSD1	99	58.416	Heterocephalus_glaber_male
ENSAMXG00000019802	rpusd1	99	65.753	ENSHCOG00000002390	rpusd1	99	65.753	Hippocampus_comes
ENSAMXG00000019802	rpusd1	99	68.106	ENSIPUG00000001570	rpusd1	99	68.106	Ictalurus_punctatus
ENSAMXG00000019802	rpusd1	100	59.736	ENSSTOG00000004276	RPUSD1	99	59.736	Ictidomys_tridecemlineatus
ENSAMXG00000019802	rpusd1	100	59.136	ENSJJAG00000015696	Rpusd1	99	59.136	Jaculus_jaculus
ENSAMXG00000019802	rpusd1	99	68.000	ENSKMAG00000017287	rpusd1	98	67.785	Kryptolebias_marmoratus
ENSAMXG00000019802	rpusd1	99	65.461	ENSLBEG00000013354	RPUSD1	98	67.434	Labrus_bergylta
ENSAMXG00000019802	rpusd1	99	65.461	ENSLBEG00000022502	rpusd1	98	67.434	Labrus_bergylta
ENSAMXG00000019802	rpusd1	100	62.914	ENSLACG00000008869	RPUSD1	99	62.914	Latimeria_chalumnae
ENSAMXG00000019802	rpusd1	73	76.744	ENSLOCG00000005682	rpusd1	99	76.744	Lepisosteus_oculatus
ENSAMXG00000019802	rpusd1	100	57.667	ENSLAFG00000002115	RPUSD1	99	57.667	Loxodonta_africana
ENSAMXG00000019802	rpusd1	100	57.643	ENSMFAG00000003961	RPUSD1	99	57.929	Macaca_fascicularis
ENSAMXG00000019802	rpusd1	100	57.643	ENSMMUG00000000842	RPUSD1	99	57.929	Macaca_mulatta
ENSAMXG00000019802	rpusd1	100	57.643	ENSMNEG00000042712	RPUSD1	99	57.929	Macaca_nemestrina
ENSAMXG00000019802	rpusd1	100	57.643	ENSMLEG00000030591	RPUSD1	99	57.929	Mandrillus_leucophaeus
ENSAMXG00000019802	rpusd1	99	66.775	ENSMAMG00000004735	rpusd1	99	67.752	Mastacembelus_armatus
ENSAMXG00000019802	rpusd1	99	67.097	ENSMZEG00005003214	rpusd1	99	69.481	Maylandia_zebra
ENSAMXG00000019802	rpusd1	99	62.542	ENSMGAG00000005447	RPUSD1	100	62.542	Meleagris_gallopavo
ENSAMXG00000019802	rpusd1	85	56.693	ENSMAUG00000019998	Rpusd1	97	56.693	Mesocricetus_auratus
ENSAMXG00000019802	rpusd1	100	56.908	ENSMICG00000017561	RPUSD1	99	57.237	Microcebus_murinus
ENSAMXG00000019802	rpusd1	100	58.746	ENSMOCG00000014082	Rpusd1	99	58.746	Microtus_ochrogaster
ENSAMXG00000019802	rpusd1	100	66.013	ENSMMOG00000012569	rpusd1	100	67.458	Mola_mola
ENSAMXG00000019802	rpusd1	100	59.539	ENSMODG00000016882	RPUSD1	99	59.539	Monodelphis_domestica
ENSAMXG00000019802	rpusd1	99	66.990	ENSMALG00000017818	rpusd1	99	67.532	Monopterus_albus
ENSAMXG00000019802	rpusd1	100	59.406	MGP_CAROLIEiJ_G0021244	Rpusd1	99	59.406	Mus_caroli
ENSAMXG00000019802	rpusd1	100	59.736	ENSMUSG00000041199	Rpusd1	99	59.736	Mus_musculus
ENSAMXG00000019802	rpusd1	100	58.361	MGP_PahariEiJ_G0023562	Rpusd1	99	57.742	Mus_pahari
ENSAMXG00000019802	rpusd1	100	59.736	MGP_SPRETEiJ_G0022155	Rpusd1	99	59.736	Mus_spretus
ENSAMXG00000019802	rpusd1	100	58.863	ENSMPUG00000015897	RPUSD1	99	58.863	Mustela_putorius_furo
ENSAMXG00000019802	rpusd1	100	58.900	ENSMLUG00000001089	RPUSD1	99	59.547	Myotis_lucifugus
ENSAMXG00000019802	rpusd1	100	58.416	ENSNGAG00000003595	Rpusd1	99	58.416	Nannospalax_galili
ENSAMXG00000019802	rpusd1	99	70.847	ENSNBRG00000006457	rpusd1	99	70.847	Neolamprologus_brichardi
ENSAMXG00000019802	rpusd1	54	50.847	ENSNLEG00000008424	-	98	50.568	Nomascus_leucogenys
ENSAMXG00000019802	rpusd1	100	60.269	ENSMEUG00000016049	RPUSD1	99	60.269	Notamacropus_eugenii
ENSAMXG00000019802	rpusd1	100	55.219	ENSOPRG00000008340	RPUSD1	99	55.219	Ochotona_princeps
ENSAMXG00000019802	rpusd1	100	57.426	ENSODEG00000016945	RPUSD1	99	57.426	Octodon_degus
ENSAMXG00000019802	rpusd1	99	66.450	ENSONIG00000015672	rpusd1	99	68.852	Oreochromis_niloticus
ENSAMXG00000019802	rpusd1	99	69.667	ENSORLG00000013009	rpusd1	99	69.667	Oryzias_latipes
ENSAMXG00000019802	rpusd1	99	69.333	ENSORLG00020010382	rpusd1	99	69.333	Oryzias_latipes_hni
ENSAMXG00000019802	rpusd1	99	69.000	ENSORLG00015021354	rpusd1	99	69.000	Oryzias_latipes_hsok
ENSAMXG00000019802	rpusd1	99	67.893	ENSOMEG00000021426	rpusd1	99	68.896	Oryzias_melastigma
ENSAMXG00000019802	rpusd1	100	57.605	ENSOGAG00000003795	RPUSD1	99	57.605	Otolemur_garnettii
ENSAMXG00000019802	rpusd1	100	62.295	ENSOARG00000014254	RPUSD1	99	61.765	Ovis_aries
ENSAMXG00000019802	rpusd1	100	56.688	ENSPPAG00000034797	RPUSD1	99	57.282	Pan_paniscus
ENSAMXG00000019802	rpusd1	100	59.333	ENSPPRG00000012389	RPUSD1	99	59.333	Panthera_pardus
ENSAMXG00000019802	rpusd1	100	59.333	ENSPTIG00000008545	RPUSD1	91	59.333	Panthera_tigris_altaica
ENSAMXG00000019802	rpusd1	100	56.688	ENSPTRG00000007565	RPUSD1	99	57.282	Pan_troglodytes
ENSAMXG00000019802	rpusd1	100	57.325	ENSPANG00000024401	RPUSD1	99	57.605	Papio_anubis
ENSAMXG00000019802	rpusd1	100	69.180	ENSPKIG00000018890	rpusd1	91	69.180	Paramormyrops_kingsleyae
ENSAMXG00000019802	rpusd1	100	62.500	ENSPSIG00000013945	RPUSD1	100	62.500	Pelodiscus_sinensis
ENSAMXG00000019802	rpusd1	99	66.781	ENSPMGG00000014950	rpusd1	98	66.781	Periophthalmus_magnuspinnatus
ENSAMXG00000019802	rpusd1	100	58.416	ENSPEMG00000000497	Rpusd1	99	58.416	Peromyscus_maniculatus_bairdii
ENSAMXG00000019802	rpusd1	100	53.115	ENSPMAG00000001563	rpusd1	100	53.115	Petromyzon_marinus
ENSAMXG00000019802	rpusd1	100	61.000	ENSPCIG00000021216	-	93	61.000	Phascolarctos_cinereus
ENSAMXG00000019802	rpusd1	99	70.000	ENSPFOG00000007946	rpusd1	99	70.000	Poecilia_formosa
ENSAMXG00000019802	rpusd1	99	70.000	ENSPLAG00000011925	rpusd1	99	70.000	Poecilia_latipinna
ENSAMXG00000019802	rpusd1	99	70.333	ENSPMEG00000002910	rpusd1	99	70.333	Poecilia_mexicana
ENSAMXG00000019802	rpusd1	99	70.764	ENSPREG00000019851	rpusd1	99	70.764	Poecilia_reticulata
ENSAMXG00000019802	rpusd1	100	45.695	ENSPCAG00000002258	RPUSD1	99	45.695	Procavia_capensis
ENSAMXG00000019802	rpusd1	100	56.550	ENSPCOG00000022582	RPUSD1	99	56.550	Propithecus_coquereli
ENSAMXG00000019802	rpusd1	100	55.987	ENSPVAG00000013104	RPUSD1	99	55.663	Pteropus_vampyrus
ENSAMXG00000019802	rpusd1	99	69.728	ENSPNYG00000024076	rpusd1	99	70.748	Pundamilia_nyererei
ENSAMXG00000019802	rpusd1	100	78.983	ENSPNAG00000013806	rpusd1	100	78.983	Pygocentrus_nattereri
ENSAMXG00000019802	rpusd1	100	59.736	ENSRNOG00000023639	Rpusd1	99	59.736	Rattus_norvegicus
ENSAMXG00000019802	rpusd1	100	57.325	ENSRBIG00000030238	RPUSD1	99	58.252	Rhinopithecus_bieti
ENSAMXG00000019802	rpusd1	100	57.325	ENSRROG00000036663	RPUSD1	99	58.252	Rhinopithecus_roxellana
ENSAMXG00000019802	rpusd1	100	59.406	ENSSBOG00000033063	RPUSD1	99	59.406	Saimiri_boliviensis_boliviensis
ENSAMXG00000019802	rpusd1	100	61.667	ENSSHAG00000013500	RPUSD1	99	61.667	Sarcophilus_harrisii
ENSAMXG00000019802	rpusd1	99	68.896	ENSSFOG00015014394	rpusd1	99	68.896	Scleropages_formosus
ENSAMXG00000019802	rpusd1	99	66.013	ENSSMAG00000008045	rpusd1	92	67.101	Scophthalmus_maximus
ENSAMXG00000019802	rpusd1	86	75.197	ENSSDUG00000001829	rpusd1	96	68.404	Seriola_dumerili
ENSAMXG00000019802	rpusd1	86	75.197	ENSSLDG00000020853	rpusd1	96	68.404	Seriola_lalandi_dorsalis
ENSAMXG00000019802	rpusd1	56	71.257	ENSSARG00000011187	-	100	71.257	Sorex_araneus
ENSAMXG00000019802	rpusd1	62	57.895	ENSSPUG00000005119	-	100	57.895	Sphenodon_punctatus
ENSAMXG00000019802	rpusd1	99	68.078	ENSSPAG00000012708	rpusd1	99	69.608	Stegastes_partitus
ENSAMXG00000019802	rpusd1	100	59.547	ENSSSCG00000008000	RPUSD1	98	65.882	Sus_scrofa
ENSAMXG00000019802	rpusd1	85	69.600	ENSTGUG00000015375	RPUSD1	99	69.600	Taeniopygia_guttata
ENSAMXG00000019802	rpusd1	99	67.101	ENSTRUG00000003041	rpusd1	98	67.752	Takifugu_rubripes
ENSAMXG00000019802	rpusd1	99	65.068	ENSTNIG00000002660	rpusd1	99	65.068	Tetraodon_nigroviridis
ENSAMXG00000019802	rpusd1	100	59.554	ENSTTRG00000010167	RPUSD1	99	60.194	Tursiops_truncatus
ENSAMXG00000019802	rpusd1	100	60.333	ENSUAMG00000012736	RPUSD1	99	60.333	Ursus_americanus
ENSAMXG00000019802	rpusd1	100	60.870	ENSUMAG00000021174	RPUSD1	99	60.870	Ursus_maritimus
ENSAMXG00000019802	rpusd1	100	60.066	ENSVVUG00000012357	RPUSD1	99	60.066	Vulpes_vulpes
ENSAMXG00000019802	rpusd1	100	62.207	ENSXETG00000007184	rpusd1	99	62.207	Xenopus_tropicalis
ENSAMXG00000019802	rpusd1	99	69.435	ENSXCOG00000017930	rpusd1	99	69.435	Xiphophorus_couchianus
ENSAMXG00000019802	rpusd1	99	70.100	ENSXMAG00000024084	rpusd1	99	70.100	Xiphophorus_maculatus