EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000019845 (Gene tree)
Gene ID: 103038497
Gene Symbol: arf1
Alias: wu:fb33e02|wu:fb78h01
Full Name: ADP-ribosylation factor 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 6928 bases
Position: chrAPWO02000052.1:1840879-1847806
Accession: 103038497
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000033925	MMR_HSR1	PF01926.23	1.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000033868	-	1422	XM_007232466	ENSAMXP00000033925	180 (aa)	XP_007232528	UPI0003CD4F59

Gene Model

Click here to download ENSAMXG00000019845's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex04144	Endocytosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000019845's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000019845	arf1	96	44.767	ENSAMXG00000043381	zgc:110197	97	45.783
ENSAMXG00000019845	arf1	57	33.654	ENSAMXG00000018108	sar1b	75	33.654
ENSAMXG00000019845	arf1	100	96.133	ENSAMXG00000035742	arf2a	100	96.133
ENSAMXG00000019845	arf1	89	31.176	ENSAMXG00000044118	srprb	62	31.176
ENSAMXG00000019845	arf1	99	82.778	ENSAMXG00000031774	ARF5	100	82.778
ENSAMXG00000019845	arf1	98	49.432	ENSAMXG00000031771	arl5c	98	49.432
ENSAMXG00000019845	arf1	100	42.623	ENSAMXG00000024897	-	95	42.623
ENSAMXG00000019845	arf1	93	40.351	ENSAMXG00000035902	ARL6	92	40.351
ENSAMXG00000019845	arf1	95	45.614	ENSAMXG00000034370	-	94	45.614
ENSAMXG00000019845	arf1	99	82.778	ENSAMXG00000004249	-	100	82.778
ENSAMXG00000019845	arf1	54	35.052	ENSAMXG00000034192	-	68	35.052
ENSAMXG00000019845	arf1	98	50.282	ENSAMXG00000011059	arl5a	99	50.282
ENSAMXG00000019845	arf1	96	45.349	ENSAMXG00000018516	arl3l2	92	45.349
ENSAMXG00000019845	arf1	99	82.778	ENSAMXG00000038224	-	100	82.778
ENSAMXG00000019845	arf1	96	42.458	ENSAMXG00000025423	arl4ab	94	42.458
ENSAMXG00000019845	arf1	92	45.930	ENSAMXG00000006638	arl4aa	86	45.930
ENSAMXG00000019845	arf1	91	48.780	ENSAMXG00000011499	arl2	91	48.387
ENSAMXG00000019845	arf1	100	44.086	ENSAMXG00000019160	arl3l1	99	44.086
ENSAMXG00000019845	arf1	100	95.580	ENSAMXG00000016434	arf3a	79	95.580
ENSAMXG00000019845	arf1	99	31.111	ENSAMXG00000032775	arl8bb	97	31.111
ENSAMXG00000019845	arf1	86	42.308	ENSAMXG00000012281	arl11	89	42.308
ENSAMXG00000019845	arf1	99	82.222	ENSAMXG00000031467	arf4a	100	82.222
ENSAMXG00000019845	arf1	96	47.753	ENSAMXG00000024926	arl4cb	91	47.753
ENSAMXG00000019845	arf1	100	56.906	ENSAMXG00000021056	arl1	100	56.906
ENSAMXG00000019845	arf1	96	44.186	ENSAMXG00000037720	arl3	95	44.186
ENSAMXG00000019845	arf1	98	49.432	ENSAMXG00000010445	arl8	98	49.432
ENSAMXG00000019845	arf1	57	33.654	ENSAMXG00000012438	tysnd1	86	33.654
ENSAMXG00000019845	arf1	100	96.133	ENSAMXG00000037485	arf2b	100	96.133
ENSAMXG00000019845	arf1	96	33.871	ENSAMXG00000042798	arfrp1	91	33.871
ENSAMXG00000019845	arf1	99	32.222	ENSAMXG00000030683	arl8ba	97	32.222

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000019845	arf1	100	93.923	ENSACIG00000012192	-	100	93.923	Amphilophus_citrinellus
ENSAMXG00000019845	arf1	84	92.763	ENSAOCG00000001275	-	88	92.763	Amphiprion_ocellaris
ENSAMXG00000019845	arf1	100	92.818	ENSAPEG00000016909	-	100	92.818	Amphiprion_percula
ENSAMXG00000019845	arf1	100	93.923	ENSATEG00000003174	-	100	93.923	Anabas_testudineus
ENSAMXG00000019845	arf1	100	92.818	ENSACLG00000004123	-	100	92.818	Astatotilapia_calliptera
ENSAMXG00000019845	arf1	100	92.818	ENSCVAG00000013374	-	100	92.818	Cyprinodon_variegatus
ENSAMXG00000019845	arf1	100	99.444	ENSDARG00000009484	arf1	100	99.444	Danio_rerio
ENSAMXG00000019845	arf1	100	98.889	ENSELUG00000022533	arf1	79	98.889	Esox_lucius
ENSAMXG00000019845	arf1	100	92.265	ENSFHEG00000005859	-	100	92.265	Fundulus_heteroclitus
ENSAMXG00000019845	arf1	96	90.173	ENSGMOG00000000429	arf1	95	90.173	Gadus_morhua
ENSAMXG00000019845	arf1	100	92.818	ENSGAFG00000018151	-	100	92.818	Gambusia_affinis
ENSAMXG00000019845	arf1	100	84.444	ENSGACG00000014195	-	97	84.444	Gasterosteus_aculeatus
ENSAMXG00000019845	arf1	100	92.818	ENSHBUG00000002636	-	100	92.818	Haplochromis_burtoni
ENSAMXG00000019845	arf1	100	98.889	ENSIPUG00000006311	arf1	100	98.889	Ictalurus_punctatus
ENSAMXG00000019845	arf1	100	93.370	ENSKMAG00000018315	-	100	93.370	Kryptolebias_marmoratus
ENSAMXG00000019845	arf1	99	90.503	ENSLBEG00000001998	arf1	100	90.503	Labrus_bergylta
ENSAMXG00000019845	arf1	100	87.845	ENSLBEG00000023263	-	100	87.845	Labrus_bergylta
ENSAMXG00000019845	arf1	100	93.370	ENSMAMG00000001553	-	100	93.370	Mastacembelus_armatus
ENSAMXG00000019845	arf1	100	92.818	ENSMZEG00005022594	-	100	92.818	Maylandia_zebra
ENSAMXG00000019845	arf1	100	94.475	ENSMALG00000004269	-	100	94.475	Monopterus_albus
ENSAMXG00000019845	arf1	100	92.818	ENSNBRG00000016455	-	100	92.818	Neolamprologus_brichardi
ENSAMXG00000019845	arf1	100	92.818	ENSONIG00000001286	-	100	92.818	Oreochromis_niloticus
ENSAMXG00000019845	arf1	100	93.923	ENSORLG00000023270	-	100	93.923	Oryzias_latipes
ENSAMXG00000019845	arf1	100	93.370	ENSORLG00020006712	-	100	93.370	Oryzias_latipes_hni
ENSAMXG00000019845	arf1	100	93.923	ENSORLG00015019836	-	100	93.923	Oryzias_latipes_hsok
ENSAMXG00000019845	arf1	100	93.923	ENSOMEG00000023784	-	100	93.923	Oryzias_melastigma
ENSAMXG00000019845	arf1	100	91.111	ENSPMGG00000014174	arf1	100	91.111	Periophthalmus_magnuspinnatus
ENSAMXG00000019845	arf1	100	93.889	ENSPMAG00000002035	arf1	100	93.889	Petromyzon_marinus
ENSAMXG00000019845	arf1	100	92.818	ENSPFOG00000014787	-	100	92.818	Poecilia_formosa
ENSAMXG00000019845	arf1	100	92.818	ENSPLAG00000001041	-	100	92.818	Poecilia_latipinna
ENSAMXG00000019845	arf1	100	92.818	ENSPMEG00000024077	-	100	92.818	Poecilia_mexicana
ENSAMXG00000019845	arf1	100	92.818	ENSPREG00000009009	-	100	92.818	Poecilia_reticulata
ENSAMXG00000019845	arf1	100	92.818	ENSPNYG00000009472	-	100	92.818	Pundamilia_nyererei
ENSAMXG00000019845	arf1	96	98.837	ENSPNAG00000000098	arf1	95	98.837	Pygocentrus_nattereri
ENSAMXG00000019845	arf1	98	77.966	YDL137W	-	96	77.966	Saccharomyces_cerevisiae
ENSAMXG00000019845	arf1	98	78.409	YDL192W	-	96	78.409	Saccharomyces_cerevisiae
ENSAMXG00000019845	arf1	100	86.667	ENSSMAG00000006125	-	100	86.667	Scophthalmus_maximus
ENSAMXG00000019845	arf1	100	93.370	ENSSDUG00000017356	-	100	93.370	Seriola_dumerili
ENSAMXG00000019845	arf1	100	93.370	ENSSLDG00000008504	-	100	93.370	Seriola_lalandi_dorsalis
ENSAMXG00000019845	arf1	100	93.923	ENSSPAG00000011431	-	100	93.923	Stegastes_partitus
ENSAMXG00000019845	arf1	100	95.028	ENSTRUG00000019870	-	100	95.028	Takifugu_rubripes
ENSAMXG00000019845	arf1	100	93.923	ENSTNIG00000011685	-	100	93.923	Tetraodon_nigroviridis
ENSAMXG00000019845	arf1	100	92.818	ENSXCOG00000016687	-	98	92.818	Xiphophorus_couchianus
ENSAMXG00000019845	arf1	100	92.818	ENSXMAG00000009193	-	100	92.818	Xiphophorus_maculatus