EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000019919 (Gene tree)
Gene ID: 103042767
Gene Symbol: tnrc6a
Alias: wu:fc10d10
Full Name: trinucleotide repeat containing 6A
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 50058 bases
Position: chrAPWO02000681.1:308995-359052
Accession: 103042767
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000020778	Ago_hook	PF10427.9	3.4e-06	1	1
ENSAMXP00000035610	Ago_hook	PF10427.9	3.4e-06	1	1
ENSAMXP00000047855	Ago_hook	PF10427.9	3.4e-06	1	1
ENSAMXP00000042857	Ago_hook	PF10427.9	3.7e-06	1	1
ENSAMXP00000036587	Ago_hook	PF10427.9	4.2e-06	1	1
ENSAMXP00000027764	Ago_hook	PF10427.9	5.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000020778	-	5628	-	ENSAMXP00000020778	1761 (aa)	-	W5LLR6
ENSAMXT00000034033	-	5671	-	ENSAMXP00000035610	1761 (aa)	-	-
ENSAMXT00000049083	-	5578	-	ENSAMXP00000042857	1644 (aa)	-	-
ENSAMXT00000050032	-	5497	XM_022686367	ENSAMXP00000027764	1703 (aa)	XP_022542088	-
ENSAMXT00000051913	-	5764	-	ENSAMXP00000047855	1761 (aa)	-	-
ENSAMXT00000034960	-	5626	-	ENSAMXP00000036587	1715 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000019919's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000019919's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000019919	tnrc6a	69	36.602	ENSAMXG00000009579	tnrc6c2	87	36.382

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000019919	tnrc6a	99	56.818	ENSG00000090905	TNRC6A	98	87.931	Homo_sapiens
ENSAMXG00000019919	tnrc6a	99	56.757	ENSAMEG00000009333	TNRC6A	93	56.965	Ailuropoda_melanoleuca
ENSAMXG00000019919	tnrc6a	100	56.380	ENSAPLG00000009978	TNRC6A	94	57.883	Anas_platyrhynchos
ENSAMXG00000019919	tnrc6a	97	45.582	ENSACAG00000011857	TNRC6A	90	45.889	Anolis_carolinensis
ENSAMXG00000019919	tnrc6a	99	56.702	ENSANAG00000025252	TNRC6A	92	56.041	Aotus_nancymaae
ENSAMXG00000019919	tnrc6a	99	57.344	ENSBTAG00000017999	TNRC6A	93	57.135	Bos_taurus
ENSAMXG00000019919	tnrc6a	99	56.585	ENSCJAG00000020677	TNRC6A	90	55.933	Callithrix_jacchus
ENSAMXG00000019919	tnrc6a	99	57.284	ENSCAFG00000017531	TNRC6A	92	57.326	Canis_familiaris
ENSAMXG00000019919	tnrc6a	99	56.210	ENSCAFG00020021160	TNRC6A	93	56.278	Canis_lupus_dingo
ENSAMXG00000019919	tnrc6a	99	57.076	ENSCHIG00000019448	TNRC6A	97	57.295	Capra_hircus
ENSAMXG00000019919	tnrc6a	99	57.484	ENSTSYG00000012711	TNRC6A	92	56.827	Carlito_syrichta
ENSAMXG00000019919	tnrc6a	100	57.002	ENSCPOG00000036684	TNRC6A	91	57.143	Cavia_porcellus
ENSAMXG00000019919	tnrc6a	99	56.702	ENSCCAG00000033664	TNRC6A	92	56.041	Cebus_capucinus
ENSAMXG00000019919	tnrc6a	99	56.935	ENSCATG00000019284	TNRC6A	91	57.095	Cercocebus_atys
ENSAMXG00000019919	tnrc6a	99	55.497	ENSCLAG00000010217	TNRC6A	88	56.547	Chinchilla_lanigera
ENSAMXG00000019919	tnrc6a	99	55.892	ENSCSAG00000006561	TNRC6A	91	56.311	Chlorocebus_sabaeus
ENSAMXG00000019919	tnrc6a	92	77.841	ENSCHOG00000009374	TNRC6A	83	77.841	Choloepus_hoffmanni
ENSAMXG00000019919	tnrc6a	100	58.711	ENSCPBG00000001881	TNRC6A	100	59.363	Chrysemys_picta_bellii
ENSAMXG00000019919	tnrc6a	99	56.935	ENSCANG00000041549	TNRC6A	91	56.365	Colobus_angolensis_palliatus
ENSAMXG00000019919	tnrc6a	99	57.101	ENSCGRG00001015021	Tnrc6a	93	56.203	Cricetulus_griseus_chok1gshd
ENSAMXG00000019919	tnrc6a	99	56.752	ENSCGRG00000013351	Tnrc6a	91	56.594	Cricetulus_griseus_crigri
ENSAMXG00000019919	tnrc6a	100	80.774	ENSDARG00000079688	tnrc6a	100	80.300	Danio_rerio
ENSAMXG00000019919	tnrc6a	100	55.155	ENSDNOG00000013989	TNRC6A	92	55.327	Dasypus_novemcinctus
ENSAMXG00000019919	tnrc6a	99	50.353	ENSETEG00000014658	TNRC6A	92	50.733	Echinops_telfairi
ENSAMXG00000019919	tnrc6a	100	57.060	ENSEASG00005017693	TNRC6A	97	56.399	Equus_asinus_asinus
ENSAMXG00000019919	tnrc6a	100	57.118	ENSECAG00000025056	TNRC6A	92	61.635	Equus_caballus
ENSAMXG00000019919	tnrc6a	100	51.971	ENSEEUG00000004530	TNRC6A	92	52.652	Erinaceus_europaeus
ENSAMXG00000019919	tnrc6a	100	57.441	ENSFCAG00000025236	TNRC6A	92	56.926	Felis_catus
ENSAMXG00000019919	tnrc6a	100	57.669	ENSFALG00000003757	TNRC6A	91	57.815	Ficedula_albicollis
ENSAMXG00000019919	tnrc6a	100	58.725	ENSGALG00000006068	TNRC6A	100	58.873	Gallus_gallus
ENSAMXG00000019919	tnrc6a	100	58.259	ENSGAGG00000023209	TNRC6A	100	58.630	Gopherus_agassizii
ENSAMXG00000019919	tnrc6a	99	56.760	ENSGGOG00000005137	TNRC6A	92	56.203	Gorilla_gorilla
ENSAMXG00000019919	tnrc6a	99	55.977	ENSHGLG00000012474	-	91	56.132	Heterocephalus_glaber_female
ENSAMXG00000019919	tnrc6a	99	46.009	ENSHGLG00000007368	-	89	45.593	Heterocephalus_glaber_female
ENSAMXG00000019919	tnrc6a	99	56.056	ENSHGLG00100012496	-	91	56.208	Heterocephalus_glaber_male
ENSAMXG00000019919	tnrc6a	99	56.630	ENSSTOG00000023394	TNRC6A	89	56.786	Ictidomys_tridecemlineatus
ENSAMXG00000019919	tnrc6a	99	59.261	ENSLACG00000006277	TNRC6A	94	59.479	Latimeria_chalumnae
ENSAMXG00000019919	tnrc6a	99	80.338	ENSLOCG00000005517	tnrc6a	86	75.200	Lepisosteus_oculatus
ENSAMXG00000019919	tnrc6a	100	57.523	ENSLAFG00000004209	TNRC6A	93	57.350	Loxodonta_africana
ENSAMXG00000019919	tnrc6a	99	55.304	ENSMFAG00000003824	TNRC6A	92	55.776	Macaca_fascicularis
ENSAMXG00000019919	tnrc6a	99	56.876	ENSMMUG00000020428	TNRC6A	91	56.365	Macaca_mulatta
ENSAMXG00000019919	tnrc6a	99	57.110	ENSMNEG00000034854	TNRC6A	92	55.776	Macaca_nemestrina
ENSAMXG00000019919	tnrc6a	99	55.412	ENSMLEG00000042737	TNRC6A	90	55.830	Mandrillus_leucophaeus
ENSAMXG00000019919	tnrc6a	100	56.229	ENSMGAG00000006455	TNRC6A	90	57.466	Meleagris_gallopavo
ENSAMXG00000019919	tnrc6a	99	57.101	ENSMAUG00000012750	Tnrc6a	91	57.040	Mesocricetus_auratus
ENSAMXG00000019919	tnrc6a	99	57.426	ENSMICG00000030685	TNRC6A	91	56.773	Microcebus_murinus
ENSAMXG00000019919	tnrc6a	99	57.509	ENSMOCG00000000152	Tnrc6a	91	57.087	Microtus_ochrogaster
ENSAMXG00000019919	tnrc6a	100	57.273	ENSMODG00000016348	TNRC6A	90	57.364	Monodelphis_domestica
ENSAMXG00000019919	tnrc6a	100	58.020	MGP_CAROLIEiJ_G0030425	Tnrc6a	99	58.058	Mus_caroli
ENSAMXG00000019919	tnrc6a	100	57.697	ENSMUSG00000052707	Tnrc6a	99	57.880	Mus_musculus
ENSAMXG00000019919	tnrc6a	100	57.870	MGP_PahariEiJ_G0013635	Tnrc6a	99	57.782	Mus_pahari
ENSAMXG00000019919	tnrc6a	100	56.025	MGP_SPRETEiJ_G0031539	Tnrc6a	99	57.438	Mus_spretus
ENSAMXG00000019919	tnrc6a	99	53.274	ENSMPUG00000012324	TNRC6A	91	53.855	Mustela_putorius_furo
ENSAMXG00000019919	tnrc6a	100	55.355	ENSMLUG00000002701	TNRC6A	94	55.862	Myotis_lucifugus
ENSAMXG00000019919	tnrc6a	99	57.218	ENSNGAG00000020702	Tnrc6a	91	57.151	Nannospalax_galili
ENSAMXG00000019919	tnrc6a	99	55.879	ENSNLEG00000011851	TNRC6A	92	56.031	Nomascus_leucogenys
ENSAMXG00000019919	tnrc6a	76	62.581	ENSMEUG00000015959	-	68	63.480	Notamacropus_eugenii
ENSAMXG00000019919	tnrc6a	95	74.349	ENSOPRG00000005819	TNRC6A	86	74.349	Ochotona_princeps
ENSAMXG00000019919	tnrc6a	99	56.199	ENSODEG00000012802	TNRC6A	91	55.971	Octodon_degus
ENSAMXG00000019919	tnrc6a	100	57.924	ENSOANG00000007672	TNRC6A	99	58.502	Ornithorhynchus_anatinus
ENSAMXG00000019919	tnrc6a	100	54.822	ENSOCUG00000004325	TNRC6A	94	55.087	Oryctolagus_cuniculus
ENSAMXG00000019919	tnrc6a	99	56.557	ENSOGAG00000006666	TNRC6A	92	56.927	Otolemur_garnettii
ENSAMXG00000019919	tnrc6a	99	56.943	ENSOARG00000017950	TNRC6A	97	57.721	Ovis_aries
ENSAMXG00000019919	tnrc6a	99	56.876	ENSPPAG00000028379	TNRC6A	92	56.311	Pan_paniscus
ENSAMXG00000019919	tnrc6a	100	57.441	ENSPPRG00000005861	TNRC6A	91	56.926	Panthera_pardus
ENSAMXG00000019919	tnrc6a	100	57.441	ENSPTIG00000006346	TNRC6A	90	57.677	Panthera_tigris_altaica
ENSAMXG00000019919	tnrc6a	99	55.838	ENSPTRG00000007898	TNRC6A	92	56.257	Pan_troglodytes
ENSAMXG00000019919	tnrc6a	99	54.429	ENSPANG00000018523	TNRC6A	92	53.681	Papio_anubis
ENSAMXG00000019919	tnrc6a	97	73.394	ENSPKIG00000012859	tnrc6a	98	78.261	Paramormyrops_kingsleyae
ENSAMXG00000019919	tnrc6a	89	54.784	ENSPSIG00000003965	TNRC6A	100	55.206	Pelodiscus_sinensis
ENSAMXG00000019919	tnrc6a	99	57.443	ENSPEMG00000016318	Tnrc6a	91	57.342	Peromyscus_maniculatus_bairdii
ENSAMXG00000019919	tnrc6a	100	59.429	ENSPCIG00000012106	TNRC6A	94	59.520	Phascolarctos_cinereus
ENSAMXG00000019919	tnrc6a	99	55.706	ENSPPYG00000007202	TNRC6A	90	56.125	Pongo_abelii
ENSAMXG00000019919	tnrc6a	91	82.051	ENSPCAG00000008260	TNRC6A	82	82.051	Procavia_capensis
ENSAMXG00000019919	tnrc6a	99	55.594	ENSPCOG00000010134	TNRC6A	90	55.822	Propithecus_coquereli
ENSAMXG00000019919	tnrc6a	88	46.654	ENSPVAG00000012066	TNRC6A	88	47.571	Pteropus_vampyrus
ENSAMXG00000019919	tnrc6a	100	57.770	ENSRNOG00000024737	Tnrc6a	90	57.095	Rattus_norvegicus
ENSAMXG00000019919	tnrc6a	99	56.876	ENSRBIG00000014222	TNRC6A	92	56.928	Rhinopithecus_bieti
ENSAMXG00000019919	tnrc6a	99	55.838	ENSRROG00000032360	TNRC6A	91	56.257	Rhinopithecus_roxellana
ENSAMXG00000019919	tnrc6a	99	55.622	ENSSBOG00000036197	TNRC6A	100	56.805	Saimiri_boliviensis_boliviensis
ENSAMXG00000019919	tnrc6a	100	58.025	ENSSHAG00000008811	TNRC6A	100	58.283	Sarcophilus_harrisii
ENSAMXG00000019919	tnrc6a	99	79.958	ENSSFOG00015008920	tnrc6a	99	66.933	Scleropages_formosus
ENSAMXG00000019919	tnrc6a	68	48.582	ENSSARG00000002479	TNRC6A	78	50.000	Sorex_araneus
ENSAMXG00000019919	tnrc6a	100	57.226	ENSSPUG00000010525	TNRC6A	100	57.608	Sphenodon_punctatus
ENSAMXG00000019919	tnrc6a	99	57.512	ENSSSCG00000038870	TNRC6A	100	57.953	Sus_scrofa
ENSAMXG00000019919	tnrc6a	99	61.702	ENSTGUG00000006142	TNRC6A	92	58.715	Taeniopygia_guttata
ENSAMXG00000019919	tnrc6a	99	54.324	ENSTBEG00000014965	TNRC6A	93	54.698	Tupaia_belangeri
ENSAMXG00000019919	tnrc6a	91	62.222	ENSTTRG00000002008	TNRC6A	83	63.501	Tursiops_truncatus
ENSAMXG00000019919	tnrc6a	80	52.431	ENSUAMG00000006656	-	85	52.219	Ursus_americanus
ENSAMXG00000019919	tnrc6a	99	58.065	ENSUMAG00000008274	TNRC6A	100	60.851	Ursus_maritimus
ENSAMXG00000019919	tnrc6a	99	57.110	ENSVVUG00000005380	TNRC6A	96	56.538	Vulpes_vulpes
ENSAMXG00000019919	tnrc6a	100	52.789	ENSXETG00000030437	TNRC6A	96	52.404	Xenopus_tropicalis