EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000019946 (Gene tree)
Gene ID: 103028046
Gene Symbol: hdlbpb
Alias: fa07b03|sb:eu532|si:dkey-38p12.2|wu:fa07b03
Full Name: vigilin-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 30126 bases
Position: chr6:16044546-16074671
Accession: 103028046
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000020554	KH_1	PF00013.29	1e-143	1	11
ENSAMXP00000020554	KH_1	PF00013.29	1e-143	2	11
ENSAMXP00000020554	KH_1	PF00013.29	1e-143	3	11
ENSAMXP00000020554	KH_1	PF00013.29	1e-143	4	11
ENSAMXP00000020554	KH_1	PF00013.29	1e-143	5	11
ENSAMXP00000020554	KH_1	PF00013.29	1e-143	6	11
ENSAMXP00000020554	KH_1	PF00013.29	1e-143	7	11
ENSAMXP00000020554	KH_1	PF00013.29	1e-143	8	11
ENSAMXP00000020554	KH_1	PF00013.29	1e-143	9	11
ENSAMXP00000020554	KH_1	PF00013.29	1e-143	10	11
ENSAMXP00000020554	KH_1	PF00013.29	1e-143	11	11

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000020554	-	3585	XM_022670366	ENSAMXP00000020554	1194 (aa)	XP_022526087	W5LL42

Gene Model

Click here to download ENSAMXG00000019946's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000019946's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000019946	hdlbpb	93	63.376	ENSAMXG00000004221	hdlbpa	99	63.376

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000019946	hdlbpb	100	77.970	ENSAPOG00000006904	hdlbpb	100	77.970	Acanthochromis_polyacanthus
ENSAMXG00000019946	hdlbpb	100	74.784	ENSACIG00000016154	hdlbpb	100	74.941	Amphilophus_citrinellus
ENSAMXG00000019946	hdlbpb	100	78.346	ENSAOCG00000004083	hdlbpb	100	78.346	Amphiprion_ocellaris
ENSAMXG00000019946	hdlbpb	100	78.268	ENSAPEG00000012270	hdlbpb	100	78.268	Amphiprion_percula
ENSAMXG00000019946	hdlbpb	100	77.953	ENSATEG00000019877	hdlbpb	100	77.953	Anabas_testudineus
ENSAMXG00000019946	hdlbpb	100	72.806	ENSACAG00000003606	-	100	72.806	Anolis_carolinensis
ENSAMXG00000019946	hdlbpb	100	78.206	ENSACLG00000006618	hdlbpb	100	78.206	Astatotilapia_calliptera
ENSAMXG00000019946	hdlbpb	100	77.463	ENSCSEG00000000955	hdlbpb	100	77.463	Cynoglossus_semilaevis
ENSAMXG00000019946	hdlbpb	100	77.655	ENSCVAG00000005345	hdlbpb	100	77.577	Cyprinodon_variegatus
ENSAMXG00000019946	hdlbpb	99	78.848	ENSDARG00000061864	hdlbpb	99	78.848	Danio_rerio
ENSAMXG00000019946	hdlbpb	92	61.519	ENSEBUG00000005304	hdlbpb	96	61.519	Eptatretus_burgeri
ENSAMXG00000019946	hdlbpb	100	72.676	ENSELUG00000019925	hdlbpb	100	72.676	Esox_lucius
ENSAMXG00000019946	hdlbpb	100	63.475	ENSFHEG00000001701	hdlbpb	100	72.813	Fundulus_heteroclitus
ENSAMXG00000019946	hdlbpb	95	79.621	ENSGMOG00000004522	hdlbpb	76	79.621	Gadus_morhua
ENSAMXG00000019946	hdlbpb	100	77.577	ENSGAFG00000005278	hdlbpb	100	77.577	Gambusia_affinis
ENSAMXG00000019946	hdlbpb	99	75.512	ENSGACG00000019361	hdlbpb	100	75.591	Gasterosteus_aculeatus
ENSAMXG00000019946	hdlbpb	100	78.049	ENSHBUG00000018434	hdlbpb	100	78.049	Haplochromis_burtoni
ENSAMXG00000019946	hdlbpb	100	81.481	ENSIPUG00000003291	HDLBP	100	81.481	Ictalurus_punctatus
ENSAMXG00000019946	hdlbpb	100	77.498	ENSKMAG00000016562	hdlbpb	100	77.498	Kryptolebias_marmoratus
ENSAMXG00000019946	hdlbpb	100	77.717	ENSLBEG00000027855	hdlbpb	100	77.717	Labrus_bergylta
ENSAMXG00000019946	hdlbpb	100	75.917	ENSLACG00000007661	hdlbpb	100	75.917	Latimeria_chalumnae
ENSAMXG00000019946	hdlbpb	100	74.387	ENSLOCG00000013909	hdlbpb	100	74.387	Lepisosteus_oculatus
ENSAMXG00000019946	hdlbpb	100	77.795	ENSMAMG00000003035	hdlbpb	100	77.795	Mastacembelus_armatus
ENSAMXG00000019946	hdlbpb	100	78.206	ENSMZEG00005021465	hdlbpb	100	78.206	Maylandia_zebra
ENSAMXG00000019946	hdlbpb	100	76.198	ENSMMOG00000012525	hdlbpb	100	76.277	Mola_mola
ENSAMXG00000019946	hdlbpb	100	77.088	ENSMALG00000008938	hdlbpb	100	77.088	Monopterus_albus
ENSAMXG00000019946	hdlbpb	100	78.285	ENSNBRG00000002236	hdlbpb	100	78.285	Neolamprologus_brichardi
ENSAMXG00000019946	hdlbpb	100	78.127	ENSONIG00000009211	hdlbpb	100	78.206	Oreochromis_niloticus
ENSAMXG00000019946	hdlbpb	100	77.008	ENSORLG00000006581	hdlbpb	100	76.929	Oryzias_latipes
ENSAMXG00000019946	hdlbpb	100	77.008	ENSORLG00020010012	hdlbpb	100	76.929	Oryzias_latipes_hni
ENSAMXG00000019946	hdlbpb	100	77.008	ENSORLG00015006863	hdlbpb	100	77.008	Oryzias_latipes_hsok
ENSAMXG00000019946	hdlbpb	100	77.008	ENSOMEG00000011131	hdlbpb	100	77.008	Oryzias_melastigma
ENSAMXG00000019946	hdlbpb	100	79.068	ENSPKIG00000005966	hdlbpb	100	79.226	Paramormyrops_kingsleyae
ENSAMXG00000019946	hdlbpb	76	89.474	ENSPMGG00000019853	hdlbpb	99	89.474	Periophthalmus_magnuspinnatus
ENSAMXG00000019946	hdlbpb	94	63.825	ENSPMAG00000002131	hdlbpb	100	63.825	Petromyzon_marinus
ENSAMXG00000019946	hdlbpb	86	66.221	ENSPMAG00000000249	-	99	66.559	Petromyzon_marinus
ENSAMXG00000019946	hdlbpb	100	77.043	ENSPFOG00000008755	hdlbpb	100	77.043	Poecilia_formosa
ENSAMXG00000019946	hdlbpb	100	77.813	ENSPLAG00000007055	hdlbpb	100	77.813	Poecilia_latipinna
ENSAMXG00000019946	hdlbpb	100	77.857	ENSPMEG00000001952	hdlbpb	100	77.857	Poecilia_mexicana
ENSAMXG00000019946	hdlbpb	100	77.970	ENSPREG00000012848	hdlbpb	100	77.970	Poecilia_reticulata
ENSAMXG00000019946	hdlbpb	100	78.127	ENSPNYG00000022467	hdlbpb	100	78.127	Pundamilia_nyererei
ENSAMXG00000019946	hdlbpb	100	85.399	ENSPNAG00000011104	hdlbpb	100	85.951	Pygocentrus_nattereri
ENSAMXG00000019946	hdlbpb	100	78.881	ENSSFOG00015023199	hdlbpb	100	78.881	Scleropages_formosus
ENSAMXG00000019946	hdlbpb	100	78.127	ENSSMAG00000008790	hdlbpb	100	78.127	Scophthalmus_maximus
ENSAMXG00000019946	hdlbpb	100	78.110	ENSSDUG00000020694	hdlbpb	100	78.110	Seriola_dumerili
ENSAMXG00000019946	hdlbpb	100	77.795	ENSSLDG00000020807	hdlbpb	100	77.795	Seriola_lalandi_dorsalis
ENSAMXG00000019946	hdlbpb	100	73.465	ENSSPUG00000018688	-	100	73.465	Sphenodon_punctatus
ENSAMXG00000019946	hdlbpb	100	78.268	ENSSPAG00000016969	hdlbpb	100	78.268	Stegastes_partitus
ENSAMXG00000019946	hdlbpb	97	74.250	ENSTRUG00000012888	hdlbpb	99	74.250	Takifugu_rubripes
ENSAMXG00000019946	hdlbpb	99	75.625	ENSTNIG00000002555	hdlbpb	100	75.625	Tetraodon_nigroviridis
ENSAMXG00000019946	hdlbpb	100	74.917	ENSXCOG00000001797	hdlbpb	100	74.917	Xiphophorus_couchianus
ENSAMXG00000019946	hdlbpb	100	77.419	ENSXMAG00000015633	hdlbpb	100	77.419	Xiphophorus_maculatus