EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSAMXG00000020046 (Gene tree)
Gene ID
103029187
Gene Symbol
polr2a
Alias
im:7136071
Full Name
RNA polymerase II subunit A
Gene Type
protein_coding
Species
Astyanax_mexicanus
Status
putative
Strand
Plus strand
Length
28222 bases
Position
chr6:16221294-16249515
Accession
103029187
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSAMXP00000020634RNA_pol_Rpb1_5PF04998.175.2e-10111
ENSAMXP00000039052RNA_pol_Rpb1_5PF04998.175.5e-10111
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-29131
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-29231
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-29331
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-29431
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-29531
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-29631
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-29731
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-29831
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-29931
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-291031
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-291131
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-291231
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-291331
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-291431
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-291531
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-291631
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-291731
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-291831
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-291931
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-292031
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-292131
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-292231
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-292331
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-292431
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-292531
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-292631
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-292731
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-292831
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-292931
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-293031
ENSAMXP00000020634RNA_pol_Rpb1_RPF05001.134.3e-293131
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-23132
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-23232
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-23332
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-23432
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-23532
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-23632
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-23732
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-23832
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-23932
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-231032
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-231132
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-231232
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-231332
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-231432
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-231532
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-231632
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-231732
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-231832
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-231932
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-232032
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-232132
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-232232
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-232332
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-232432
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-232532
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-232632
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-232732
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-232832
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-232932
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-233032
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-233132
ENSAMXP00000039052RNA_pol_Rpb1_RPF05001.139e-233232
ENSAMXP00000020634RNA_pol_Rpb1_4PF05000.171.4e-3711
ENSAMXP00000039052RNA_pol_Rpb1_4PF05000.171.5e-3711
ENSAMXP00000020634RNA_pol_Rpb1_2PF00623.207.3e-7511
ENSAMXP00000039052RNA_pol_Rpb1_2PF00623.207.6e-7511
ENSAMXP00000020634RNA_pol_Rpb1_3PF04983.181.9e-4911
ENSAMXP00000039052RNA_pol_Rpb1_3PF04983.182e-4911
ENSAMXP00000020634RNA_pol_Rpb1_1PF04997.123.7e-10811
ENSAMXP00000039052RNA_pol_Rpb1_1PF04997.123.9e-10811
ENSAMXP00000020634RNA_pol_Rpb1_7PF04990.127.6e-5511
ENSAMXP00000039052RNA_pol_Rpb1_7PF04990.127.8e-5511
ENSAMXP00000020634RNA_pol_Rpb1_6PF04992.144.9e-6711
ENSAMXP00000039052RNA_pol_Rpb1_6PF04992.145.1e-6711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSAMXT00000020634-5787-ENSAMXP000000206341928 (aa)-W5LLC2
ENSAMXT00000054114-10369XM_007230747ENSAMXP000000390521966 (aa)XP_007230809UPI0003CD3616
Gene Model
Click here to download ENSAMXG00000020046's gene model file
Pathways
Pathway IDPathway NameSource
amex03020RNA polymeraseKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000020046's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSAMXG00000020046polr2a6835.398ENSAMXG00000018852polr3a9135.398
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSAMXG00000020046polr2a8797.643ENSAPOG00000006552polr2a9097.643Acanthochromis_polyacanthus
ENSAMXG00000020046polr2a8294.424ENSAMEG00000016265-8294.431Ailuropoda_melanoleuca
ENSAMXG00000020046polr2a10097.770ENSACIG00000015982polr2a10097.770Amphilophus_citrinellus
ENSAMXG00000020046polr2a9597.840ENSAOCG00000004255polr2a9397.840Amphiprion_ocellaris
ENSAMXG00000020046polr2a10098.237ENSAPEG00000012623polr2a10098.237Amphiprion_percula
ENSAMXG00000020046polr2a10097.925ENSATEG00000019644polr2a10097.925Anabas_testudineus
ENSAMXG00000020046polr2a8294.907ENSACAG00000014561POLR2A8294.913Anolis_carolinensis
ENSAMXG00000020046polr2a8294.786ENSANAG00000020093-8294.857Aotus_nancymaae
ENSAMXG00000020046polr2a10097.614ENSACLG00000006735polr2a10097.614Astatotilapia_calliptera
ENSAMXG00000020046polr2a8294.786ENSBTAG00000046765POLR2A8294.792Bos_taurus
ENSAMXG00000020046polr2a9871.429WBGene00000123ama-19979.612Caenorhabditis_elegans
ENSAMXG00000020046polr2a8694.724ENSCAFG00000016532POLR2A9994.730Canis_familiaris
ENSAMXG00000020046polr2a8293.859ENSCAFG00020007929-8293.866Canis_lupus_dingo
ENSAMXG00000020046polr2a8294.786ENSCHIG00000027173-8294.792Capra_hircus
ENSAMXG00000020046polr2a9292.372ENSTSYG00000012803-8592.079Carlito_syrichta
ENSAMXG00000020046polr2a9891.440ENSCAPG00000001882-10094.058Cavia_aperea
ENSAMXG00000020046polr2a9989.040ENSCPOG00000014812-10093.614Cavia_porcellus
ENSAMXG00000020046polr2a8294.786ENSCCAG00000020938-8294.857Cebus_capucinus
ENSAMXG00000020046polr2a8294.848ENSCATG00000013680-8294.854Cercocebus_atys
ENSAMXG00000020046polr2a8294.662ENSCLAG00000012196-8294.730Chinchilla_lanigera
ENSAMXG00000020046polr2a8286.058ENSCSAG00000011644-8286.075Chlorocebus_sabaeus
ENSAMXG00000020046polr2a9084.334ENSCPBG00000012697POLR2A9986.111Chrysemys_picta_bellii
ENSAMXG00000020046polr2a9876.746ENSCING00000007884-9977.304Ciona_intestinalis
ENSAMXG00000020046polr2a9879.630ENSCSAVG00000008334-9981.731Ciona_savignyi
ENSAMXG00000020046polr2a8294.165ENSCANG00000010622-8294.172Colobus_angolensis_palliatus
ENSAMXG00000020046polr2a8189.574ENSCGRG00001003538Polr2a8587.073Cricetulus_griseus_chok1gshd
ENSAMXG00000020046polr2a8291.043ENSCGRG00000012105Polr2a9391.054Cricetulus_griseus_crigri
ENSAMXG00000020046polr2a9997.042ENSCSEG00000002635polr2a10097.042Cynoglossus_semilaevis
ENSAMXG00000020046polr2a10097.965ENSCVAG00000005156polr2a10097.965Cyprinodon_variegatus
ENSAMXG00000020046polr2a10097.966ENSDARG00000099966polr2a10097.966Danio_rerio
ENSAMXG00000020046polr2a8291.806ENSDNOG00000016482-8291.178Dasypus_novemcinctus
ENSAMXG00000020046polr2a8294.786ENSDORG00000008667Polr2a8294.857Dipodomys_ordii
ENSAMXG00000020046polr2a9970.111FBgn0003277RpII2159974.424Drosophila_melanogaster
ENSAMXG00000020046polr2a9490.325ENSETEG00000002540-8791.438Echinops_telfairi
ENSAMXG00000020046polr2a8287.274ENSEBUG00000013967polr2a8287.259Eptatretus_burgeri
ENSAMXG00000020046polr2a8292.737ENSEASG00005019114-8392.746Equus_asinus_asinus
ENSAMXG00000020046polr2a8294.786ENSECAG00000018485POLR2A8294.792Equus_caballus
ENSAMXG00000020046polr2a8594.593ENSEEUG00000001154-9594.593Erinaceus_europaeus
ENSAMXG00000020046polr2a8895.457ENSELUG00000014284polr2a8495.457Esox_lucius
ENSAMXG00000020046polr2a8294.848ENSFDAG00000008287-8294.854Fukomys_damarensis
ENSAMXG00000020046polr2a9997.704ENSFHEG00000001768polr2a10097.704Fundulus_heteroclitus
ENSAMXG00000020046polr2a9993.133ENSGMOG00000007725polr2a10093.133Gadus_morhua
ENSAMXG00000020046polr2a99100.000ENSGAFG00000005389polr2a10094.417Gambusia_affinis
ENSAMXG00000020046polr2a9993.289ENSGACG00000019366polr2a10093.061Gasterosteus_aculeatus
ENSAMXG00000020046polr2a8292.693ENSGGOG00000014800-9693.299Gorilla_gorilla
ENSAMXG00000020046polr2a9997.534ENSHBUG00000018937polr2a10097.482Haplochromis_burtoni
ENSAMXG00000020046polr2a8294.848ENSHGLG00000012381POLR2A8294.921Heterocephalus_glaber_female
ENSAMXG00000020046polr2a8294.848ENSHGLG00100014843POLR2A8294.921Heterocephalus_glaber_male
ENSAMXG00000020046polr2a10097.304ENSHCOG00000011874polr2a10097.304Hippocampus_comes
ENSAMXG00000020046polr2a10098.728ENSIPUG00000002613Polr2a10098.728Ictalurus_punctatus
ENSAMXG00000020046polr2a8294.786ENSSTOG00000001304-8294.857Ictidomys_tridecemlineatus
ENSAMXG00000020046polr2a8294.910ENSJJAG00000013049Polr2a8294.984Jaculus_jaculus
ENSAMXG00000020046polr2a82100.000ENSKMAG00000016343polr2a86100.000Kryptolebias_marmoratus
ENSAMXG00000020046polr2a9997.769ENSLBEG00000027652polr2a10097.769Labrus_bergylta
ENSAMXG00000020046polr2a8085.642ENSLACG00000012071POLR2A8185.714Latimeria_chalumnae
ENSAMXG00000020046polr2a8997.290ENSLOCG00000013863polr2a9796.834Lepisosteus_oculatus
ENSAMXG00000020046polr2a9991.485ENSLAFG00000008626-9794.792Loxodonta_africana
ENSAMXG00000020046polr2a5193.667ENSMFAG00000007042-9993.667Macaca_fascicularis
ENSAMXG00000020046polr2a8294.848ENSMMUG00000023620-9194.854Macaca_mulatta
ENSAMXG00000020046polr2a8294.413ENSMNEG00000040407-8294.420Macaca_nemestrina
ENSAMXG00000020046polr2a8090.633ENSMLEG00000030263-9993.667Mandrillus_leucophaeus
ENSAMXG00000020046polr2a10097.558ENSMAMG00000003351polr2a10097.558Mastacembelus_armatus
ENSAMXG00000020046polr2a10097.558ENSMZEG00005021429polr2a10097.558Maylandia_zebra
ENSAMXG00000020046polr2a5194.903ENSMAUG00000021055-9994.903Mesocricetus_auratus
ENSAMXG00000020046polr2a8294.786ENSMICG00000013372-9894.063Microcebus_murinus
ENSAMXG00000020046polr2a9992.386ENSMOCG00000018279Polr2a10092.395Microtus_ochrogaster
ENSAMXG00000020046polr2a9096.836ENSMMOG00000012515polr2a9296.836Mola_mola
ENSAMXG00000020046polr2a8294.538ENSMODG00000007009-8294.544Monodelphis_domestica
ENSAMXG00000020046polr2a9494.362ENSMALG00000008716polr2a9997.332Monopterus_albus
ENSAMXG00000020046polr2a8294.786MGP_CAROLIEiJ_G0016587Polr2a8294.857Mus_caroli
ENSAMXG00000020046polr2a8294.786ENSMUSG00000005198Polr2a8294.857Mus_musculus
ENSAMXG00000020046polr2a8292.645MGP_PahariEiJ_G0017718Polr2a8292.654Mus_pahari
ENSAMXG00000020046polr2a8294.786MGP_SPRETEiJ_G0017423Polr2a8294.857Mus_spretus
ENSAMXG00000020046polr2a8294.662ENSMPUG00000009648-8294.668Mustela_putorius_furo
ENSAMXG00000020046polr2a8294.172ENSMLUG00000009088-8294.180Myotis_lucifugus
ENSAMXG00000020046polr2a8294.786ENSNGAG00000002543Polr2a8294.857Nannospalax_galili
ENSAMXG00000020046polr2a10097.822ENSNBRG00000002005polr2a10097.822Neolamprologus_brichardi
ENSAMXG00000020046polr2a8194.851ENSNLEG00000009460-8294.857Nomascus_leucogenys
ENSAMXG00000020046polr2a9495.643ENSMEUG00000008611-9687.036Notamacropus_eugenii
ENSAMXG00000020046polr2a8094.504ENSOPRG00000015116-9994.504Ochotona_princeps
ENSAMXG00000020046polr2a8794.589ENSODEG00000017674-8589.982Octodon_degus
ENSAMXG00000020046polr2a10097.813ENSONIG00000009231polr2a10097.813Oreochromis_niloticus
ENSAMXG00000020046polr2a9990.690ENSOCUG00000017929-10094.668Oryctolagus_cuniculus
ENSAMXG00000020046polr2a10097.873ENSORLG00000006431polr2a10097.873Oryzias_latipes
ENSAMXG00000020046polr2a10097.873ENSORLG00020010235polr2a10097.873Oryzias_latipes_hni
ENSAMXG00000020046polr2a10097.770ENSORLG00015007075polr2a10097.770Oryzias_latipes_hsok
ENSAMXG00000020046polr2a9598.118ENSOMEG00000010713polr2a10097.200Oryzias_melastigma
ENSAMXG00000020046polr2a8294.786ENSOGAG00000033608-8294.792Otolemur_garnettii
ENSAMXG00000020046polr2a9194.786ENSOARG00000013874-9091.940Ovis_aries
ENSAMXG00000020046polr2a8194.754ENSPPAG00000043734-8990.400Pan_paniscus
ENSAMXG00000020046polr2a8194.851ENSPTRG00000008691POLR2A8294.857Pan_troglodytes
ENSAMXG00000020046polr2a8294.165ENSPANG00000024099-8294.222Papio_anubis
ENSAMXG00000020046polr2a8195.749ENSPKIG00000005727polr2a8595.749Paramormyrops_kingsleyae
ENSAMXG00000020046polr2a9893.013ENSPSIG00000014006POLR2A10092.937Pelodiscus_sinensis
ENSAMXG00000020046polr2a10096.774ENSPMGG00000019734polr2a10096.774Periophthalmus_magnuspinnatus
ENSAMXG00000020046polr2a8294.786ENSPEMG00000012521Polr2a8294.857Peromyscus_maniculatus_bairdii
ENSAMXG00000020046polr2a8694.541ENSPCIG00000028851-8294.541Phascolarctos_cinereus
ENSAMXG00000020046polr2a9997.731ENSPFOG00000007890polr2a9997.731Poecilia_formosa
ENSAMXG00000020046polr2a9997.731ENSPLAG00000007399polr2a9997.731Poecilia_latipinna
ENSAMXG00000020046polr2a10097.738ENSPMEG00000002071polr2a9997.738Poecilia_mexicana
ENSAMXG00000020046polr2a10097.770ENSPREG00000013122polr2a10097.770Poecilia_reticulata
ENSAMXG00000020046polr2a8294.786ENSPPYG00000007924-8294.792Pongo_abelii
ENSAMXG00000020046polr2a7395.526ENSPCAG00000006951-7495.526Procavia_capensis
ENSAMXG00000020046polr2a8194.851ENSPCOG00000025260-8294.857Propithecus_coquereli
ENSAMXG00000020046polr2a8294.475ENSPVAG00000005069-8294.482Pteropus_vampyrus
ENSAMXG00000020046polr2a10097.609ENSPNYG00000022340polr2a10097.609Pundamilia_nyererei
ENSAMXG00000020046polr2a10099.339ENSPNAG00000011237polr2a10099.339Pygocentrus_nattereri
ENSAMXG00000020046polr2a8294.724ENSRNOG00000028834Polr2a8294.730Rattus_norvegicus
ENSAMXG00000020046polr2a8294.475ENSRBIG00000002471-9194.482Rhinopithecus_bieti
ENSAMXG00000020046polr2a8294.848ENSRROG00000029583-8993.986Rhinopithecus_roxellana
ENSAMXG00000020046polr2a8450.215YDL140CRPO219983.544Saccharomyces_cerevisiae
ENSAMXG00000020046polr2a8294.786ENSSBOG00000000808-8294.857Saimiri_boliviensis_boliviensis
ENSAMXG00000020046polr2a9394.538ENSSHAG00000002858-8494.544Sarcophilus_harrisii
ENSAMXG00000020046polr2a9997.720ENSSFOG00015023275polr2a10097.720Scleropages_formosus
ENSAMXG00000020046polr2a10095.168ENSSMAG00000009137polr2a10094.659Scophthalmus_maximus
ENSAMXG00000020046polr2a10097.977ENSSDUG00000020466polr2a10097.977Seriola_dumerili
ENSAMXG00000020046polr2a10097.977ENSSLDG00000020613polr2a10097.977Seriola_lalandi_dorsalis
ENSAMXG00000020046polr2a9590.251ENSSARG00000005875-9991.078Sorex_araneus
ENSAMXG00000020046polr2a100100.000ENSSPAG00000016741polr2a95100.000Stegastes_partitus
ENSAMXG00000020046polr2a8293.855ENSSSCG00000028278-8293.862Sus_scrofa
ENSAMXG00000020046polr2a9892.002ENSTRUG00000012320polr2a8192.002Takifugu_rubripes
ENSAMXG00000020046polr2a9596.278ENSTNIG00000010136polr2a10096.278Tetraodon_nigroviridis
ENSAMXG00000020046polr2a7694.898ENSTBEG00000013294-5894.898Tupaia_belangeri
ENSAMXG00000020046polr2a8293.110ENSTTRG00000014273-8293.118Tursiops_truncatus
ENSAMXG00000020046polr2a9394.420ENSUAMG00000014866-10091.837Ursus_americanus
ENSAMXG00000020046polr2a7491.913ENSUMAG00000015732-8391.620Ursus_maritimus
ENSAMXG00000020046polr2a6598.370ENSVPAG00000008842-7698.370Vicugna_pacos
ENSAMXG00000020046polr2a8294.724ENSVVUG00000027878-8394.730Vulpes_vulpes
ENSAMXG00000020046polr2a8194.147ENSXETG00000012465polr2a8294.155Xenopus_tropicalis
ENSAMXG00000020046polr2a9696.847ENSXCOG00000001804polr2a10096.847Xiphophorus_couchianus
ENSAMXG00000020046polr2a10097.770ENSXMAG00000015687polr2a10097.770Xiphophorus_maculatus

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