EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000020291 (Gene tree)
Gene ID: 103045815
Gene Symbol: prpf8
Alias: id:ibd1257|ik:tdsubc_2a9|im:7141966|tdsubc_2a9|wu:fb37c02|wu:fb73e06|xx:tdsubc_2a9|zgc:56504
Full Name: pre-mRNA processing factor 8
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 16000 bases
Position: chr1:13663358-13679357
Accession: 103045815
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000020894	RRM_4	PF10598.9	4.1e-48	1	1
ENSAMXP00000020894	U5_2-snRNA_bdg	PF10597.9	8.9e-74	1	1
ENSAMXP00000020894	PRO8NT	PF08082.11	1.8e-86	1	1
ENSAMXP00000020894	U6-snRNA_bdg	PF10596.9	2.2e-89	1	1
ENSAMXP00000020894	PROCN	PF08083.11	1.2e-235	1	1
ENSAMXP00000020894	PRP8_domainIV	PF12134.8	5.3e-130	1	1
ENSAMXP00000020894	PROCT	PF08084.11	3.4e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000020894	-	8674	XM_007260888	ENSAMXP00000020894	2333 (aa)	XP_007260950	W5LM32

Gene Model

Click here to download ENSAMXG00000020291's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000020291's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000020291	prpf8	100	97.731	ENSG00000174231	PRPF8	100	97.731	Homo_sapiens
ENSAMXG00000020291	prpf8	100	99.145	ENSAPOG00000010079	prpf8	100	99.145	Acanthochromis_polyacanthus
ENSAMXG00000020291	prpf8	100	97.731	ENSAMEG00000007940	PRPF8	100	97.731	Ailuropoda_melanoleuca
ENSAMXG00000020291	prpf8	100	97.028	ENSACIG00000018280	prpf8	100	97.028	Amphilophus_citrinellus
ENSAMXG00000020291	prpf8	100	99.102	ENSAOCG00000010725	prpf8	100	99.102	Amphiprion_ocellaris
ENSAMXG00000020291	prpf8	100	99.102	ENSAPEG00000014397	prpf8	100	99.102	Amphiprion_percula
ENSAMXG00000020291	prpf8	100	98.375	ENSATEG00000010062	prpf8	100	98.375	Anabas_testudineus
ENSAMXG00000020291	prpf8	96	98.132	ENSAPLG00000010357	PRPF8	100	98.132	Anas_platyrhynchos
ENSAMXG00000020291	prpf8	82	96.283	ENSACAG00000014784	PRPF8	99	96.283	Anolis_carolinensis
ENSAMXG00000020291	prpf8	100	97.731	ENSANAG00000032629	PRPF8	100	97.731	Aotus_nancymaae
ENSAMXG00000020291	prpf8	100	98.340	ENSACLG00000020858	prpf8	100	98.340	Astatotilapia_calliptera
ENSAMXG00000020291	prpf8	100	97.731	ENSBTAG00000011488	PRPF8	100	97.731	Bos_taurus
ENSAMXG00000020291	prpf8	99	86.455	WBGene00004187	prp-8	99	87.024	Caenorhabditis_elegans
ENSAMXG00000020291	prpf8	100	97.731	ENSCJAG00000001911	PRPF8	100	97.731	Callithrix_jacchus
ENSAMXG00000020291	prpf8	100	97.731	ENSCAFG00000019221	PRPF8	100	97.731	Canis_familiaris
ENSAMXG00000020291	prpf8	96	98.081	ENSCAFG00020009943	PRPF8	100	98.081	Canis_lupus_dingo
ENSAMXG00000020291	prpf8	100	97.731	ENSCHIG00000017499	PRPF8	100	97.731	Capra_hircus
ENSAMXG00000020291	prpf8	100	97.731	ENSTSYG00000014120	PRPF8	100	97.731	Carlito_syrichta
ENSAMXG00000020291	prpf8	96	95.857	ENSCAPG00000009459	PRPF8	99	95.857	Cavia_aperea
ENSAMXG00000020291	prpf8	100	97.731	ENSCPOG00000010379	PRPF8	100	97.731	Cavia_porcellus
ENSAMXG00000020291	prpf8	100	97.731	ENSCCAG00000031983	-	100	97.731	Cebus_capucinus
ENSAMXG00000020291	prpf8	100	97.731	ENSCATG00000038595	PRPF8	100	97.731	Cercocebus_atys
ENSAMXG00000020291	prpf8	100	97.731	ENSCLAG00000004388	PRPF8	100	97.731	Chinchilla_lanigera
ENSAMXG00000020291	prpf8	100	97.731	ENSCSAG00000013929	PRPF8	100	97.731	Chlorocebus_sabaeus
ENSAMXG00000020291	prpf8	81	97.333	ENSCHOG00000008590	PRPF8	88	97.333	Choloepus_hoffmanni
ENSAMXG00000020291	prpf8	100	97.816	ENSCPBG00000020409	PRPF8	100	97.816	Chrysemys_picta_bellii
ENSAMXG00000020291	prpf8	99	92.993	ENSCSAVG00000007825	-	100	91.323	Ciona_savignyi
ENSAMXG00000020291	prpf8	100	97.731	ENSCANG00000043088	PRPF8	100	97.731	Colobus_angolensis_palliatus
ENSAMXG00000020291	prpf8	74	99.409	ENSCGRG00000005129	Prpf8	100	99.409	Cricetulus_griseus_crigri
ENSAMXG00000020291	prpf8	100	98.888	ENSCSEG00000007905	prpf8	100	98.888	Cynoglossus_semilaevis
ENSAMXG00000020291	prpf8	100	98.676	ENSDARG00000026180	prpf8	100	98.676	Danio_rerio
ENSAMXG00000020291	prpf8	93	97.929	ENSDNOG00000018471	PRPF8	99	97.929	Dasypus_novemcinctus
ENSAMXG00000020291	prpf8	84	96.454	ENSDORG00000006185	Prpf8	96	96.454	Dipodomys_ordii
ENSAMXG00000020291	prpf8	99	91.810	FBgn0033688	Prp8	97	91.879	Drosophila_melanogaster
ENSAMXG00000020291	prpf8	100	92.466	ENSETEG00000017592	PRPF8	100	92.466	Echinops_telfairi
ENSAMXG00000020291	prpf8	99	93.419	ENSEBUG00000006548	prpf8	99	93.419	Eptatretus_burgeri
ENSAMXG00000020291	prpf8	100	97.731	ENSEASG00005009514	PRPF8	100	97.731	Equus_asinus_asinus
ENSAMXG00000020291	prpf8	98	98.110	ENSECAG00000021318	PRPF8	100	98.110	Equus_caballus
ENSAMXG00000020291	prpf8	67	98.519	ENSEEUG00000012120	-	67	98.519	Erinaceus_europaeus
ENSAMXG00000020291	prpf8	98	97.421	ENSELUG00000007120	prpf8	99	97.421	Esox_lucius
ENSAMXG00000020291	prpf8	100	97.731	ENSFCAG00000006297	PRPF8	100	97.731	Felis_catus
ENSAMXG00000020291	prpf8	100	97.901	ENSFALG00000006628	PRPF8	100	97.901	Ficedula_albicollis
ENSAMXG00000020291	prpf8	100	97.731	ENSFDAG00000004711	PRPF8	100	97.731	Fukomys_damarensis
ENSAMXG00000020291	prpf8	100	98.335	ENSFHEG00000021084	prpf8	100	98.335	Fundulus_heteroclitus
ENSAMXG00000020291	prpf8	100	96.574	ENSGMOG00000002028	prpf8	99	96.574	Gadus_morhua
ENSAMXG00000020291	prpf8	100	97.901	ENSGALG00000002943	PRPF8	100	97.901	Gallus_gallus
ENSAMXG00000020291	prpf8	99	98.838	ENSGAFG00000010337	prpf8	99	98.838	Gambusia_affinis
ENSAMXG00000020291	prpf8	100	98.929	ENSGACG00000008504	prpf8	100	98.929	Gasterosteus_aculeatus
ENSAMXG00000020291	prpf8	100	97.901	ENSGAGG00000008350	PRPF8	100	97.901	Gopherus_agassizii
ENSAMXG00000020291	prpf8	100	97.731	ENSGGOG00000005516	PRPF8	100	97.731	Gorilla_gorilla
ENSAMXG00000020291	prpf8	100	98.628	ENSHBUG00000016192	prpf8	100	98.628	Haplochromis_burtoni
ENSAMXG00000020291	prpf8	100	97.731	ENSHGLG00000012029	PRPF8	100	97.731	Heterocephalus_glaber_female
ENSAMXG00000020291	prpf8	100	97.731	ENSHGLG00100016494	PRPF8	100	97.731	Heterocephalus_glaber_male
ENSAMXG00000020291	prpf8	100	98.589	ENSHCOG00000016414	prpf8	100	98.589	Hippocampus_comes
ENSAMXG00000020291	prpf8	100	99.230	ENSIPUG00000023230	prpf8	100	99.230	Ictalurus_punctatus
ENSAMXG00000020291	prpf8	100	97.731	ENSSTOG00000005128	PRPF8	100	97.731	Ictidomys_tridecemlineatus
ENSAMXG00000020291	prpf8	100	95.591	ENSJJAG00000021159	Prpf8	100	95.591	Jaculus_jaculus
ENSAMXG00000020291	prpf8	99	98.838	ENSKMAG00000016118	prpf8	99	98.838	Kryptolebias_marmoratus
ENSAMXG00000020291	prpf8	100	98.888	ENSLBEG00000026903	prpf8	100	98.888	Labrus_bergylta
ENSAMXG00000020291	prpf8	95	95.619	ENSLACG00000010479	PRPF8	99	98.213	Latimeria_chalumnae
ENSAMXG00000020291	prpf8	99	98.672	ENSLOCG00000005409	prpf8	99	98.672	Lepisosteus_oculatus
ENSAMXG00000020291	prpf8	100	97.731	ENSLAFG00000015445	PRPF8	100	97.731	Loxodonta_africana
ENSAMXG00000020291	prpf8	100	97.731	ENSMFAG00000039995	PRPF8	100	97.731	Macaca_fascicularis
ENSAMXG00000020291	prpf8	100	97.731	ENSMMUG00000004820	PRPF8	100	97.731	Macaca_mulatta
ENSAMXG00000020291	prpf8	100	97.731	ENSMNEG00000035713	PRPF8	100	97.731	Macaca_nemestrina
ENSAMXG00000020291	prpf8	100	97.731	ENSMLEG00000037937	PRPF8	100	97.731	Mandrillus_leucophaeus
ENSAMXG00000020291	prpf8	100	99.016	ENSMAMG00000008919	prpf8	100	99.016	Mastacembelus_armatus
ENSAMXG00000020291	prpf8	100	98.340	ENSMZEG00005015073	prpf8	100	98.340	Maylandia_zebra
ENSAMXG00000020291	prpf8	100	97.901	ENSMGAG00000004769	PRPF8	100	97.901	Meleagris_gallopavo
ENSAMXG00000020291	prpf8	100	97.731	ENSMICG00000010320	PRPF8	100	97.731	Microcebus_murinus
ENSAMXG00000020291	prpf8	100	97.731	ENSMOCG00000016838	Prpf8	100	97.731	Microtus_ochrogaster
ENSAMXG00000020291	prpf8	100	98.546	ENSMMOG00000011887	prpf8	100	98.546	Mola_mola
ENSAMXG00000020291	prpf8	100	97.731	ENSMODG00000010480	PRPF8	100	97.731	Monodelphis_domestica
ENSAMXG00000020291	prpf8	97	98.353	ENSMALG00000003558	prpf8	100	98.353	Monopterus_albus
ENSAMXG00000020291	prpf8	100	97.688	MGP_CAROLIEiJ_G0016740	Prpf8	100	97.688	Mus_caroli
ENSAMXG00000020291	prpf8	100	97.688	ENSMUSG00000020850	Prpf8	100	97.688	Mus_musculus
ENSAMXG00000020291	prpf8	100	97.646	MGP_PahariEiJ_G0017877	Prpf8	100	97.646	Mus_pahari
ENSAMXG00000020291	prpf8	100	97.688	MGP_SPRETEiJ_G0017583	Prpf8	100	97.688	Mus_spretus
ENSAMXG00000020291	prpf8	100	97.731	ENSMPUG00000013227	PRPF8	100	97.731	Mustela_putorius_furo
ENSAMXG00000020291	prpf8	100	97.606	ENSMLUG00000002666	PRPF8	100	97.606	Myotis_lucifugus
ENSAMXG00000020291	prpf8	100	95.976	ENSNGAG00000005305	Prpf8	100	95.976	Nannospalax_galili
ENSAMXG00000020291	prpf8	100	98.383	ENSNBRG00000013127	prpf8	100	98.383	Neolamprologus_brichardi
ENSAMXG00000020291	prpf8	97	96.698	ENSNLEG00000000897	PRPF8	98	96.698	Nomascus_leucogenys
ENSAMXG00000020291	prpf8	99	96.262	ENSMEUG00000015999	PRPF8	100	96.262	Notamacropus_eugenii
ENSAMXG00000020291	prpf8	100	95.976	ENSOPRG00000003102	PRPF8	100	95.889	Ochotona_princeps
ENSAMXG00000020291	prpf8	100	97.731	ENSODEG00000008468	PRPF8	100	97.731	Octodon_degus
ENSAMXG00000020291	prpf8	100	98.340	ENSONIG00000008153	prpf8	100	98.340	Oreochromis_niloticus
ENSAMXG00000020291	prpf8	82	99.252	ENSOANG00000004250	PRPF8	97	99.252	Ornithorhynchus_anatinus
ENSAMXG00000020291	prpf8	100	97.731	ENSOCUG00000000081	PRPF8	100	97.731	Oryctolagus_cuniculus
ENSAMXG00000020291	prpf8	100	97.961	ENSORLG00000008036	prpf8	100	97.961	Oryzias_latipes
ENSAMXG00000020291	prpf8	100	97.919	ENSORLG00020021070	prpf8	100	97.919	Oryzias_latipes_hni
ENSAMXG00000020291	prpf8	100	97.961	ENSORLG00015002340	prpf8	100	97.961	Oryzias_latipes_hsok
ENSAMXG00000020291	prpf8	100	96.474	ENSOMEG00000016866	prpf8	100	96.474	Oryzias_melastigma
ENSAMXG00000020291	prpf8	100	97.606	ENSOARG00000013312	PRPF8	100	97.606	Ovis_aries
ENSAMXG00000020291	prpf8	100	97.731	ENSPPAG00000042753	PRPF8	100	97.731	Pan_paniscus
ENSAMXG00000020291	prpf8	100	97.731	ENSPPRG00000008746	PRPF8	100	97.731	Panthera_pardus
ENSAMXG00000020291	prpf8	100	97.646	ENSPTIG00000019200	PRPF8	100	97.646	Panthera_tigris_altaica
ENSAMXG00000020291	prpf8	100	97.731	ENSPTRG00000039576	PRPF8	100	97.731	Pan_troglodytes
ENSAMXG00000020291	prpf8	99	98.089	ENSPANG00000024607	PRPF8	98	98.089	Papio_anubis
ENSAMXG00000020291	prpf8	100	98.338	ENSPKIG00000011201	prpf8	100	98.338	Paramormyrops_kingsleyae
ENSAMXG00000020291	prpf8	100	97.773	ENSPSIG00000013393	PRPF8	100	97.773	Pelodiscus_sinensis
ENSAMXG00000020291	prpf8	100	97.731	ENSPEMG00000021699	Prpf8	100	97.731	Peromyscus_maniculatus_bairdii
ENSAMXG00000020291	prpf8	96	93.764	ENSPMAG00000005438	prpf8	100	93.808	Petromyzon_marinus
ENSAMXG00000020291	prpf8	100	97.731	ENSPCIG00000022603	PRPF8	100	98.081	Phascolarctos_cinereus
ENSAMXG00000020291	prpf8	100	97.837	ENSPFOG00000007005	prpf8	100	97.837	Poecilia_formosa
ENSAMXG00000020291	prpf8	100	97.342	ENSPLAG00000020777	prpf8	100	97.342	Poecilia_latipinna
ENSAMXG00000020291	prpf8	100	97.837	ENSPMEG00000004051	prpf8	100	97.837	Poecilia_mexicana
ENSAMXG00000020291	prpf8	100	98.886	ENSPREG00000021902	prpf8	100	98.886	Poecilia_reticulata
ENSAMXG00000020291	prpf8	100	97.731	ENSPPYG00000007777	PRPF8	100	97.731	Pongo_abelii
ENSAMXG00000020291	prpf8	90	96.782	ENSPCAG00000008938	PRPF8	90	96.782	Procavia_capensis
ENSAMXG00000020291	prpf8	100	97.731	ENSPCOG00000015182	PRPF8	100	97.731	Propithecus_coquereli
ENSAMXG00000020291	prpf8	93	98.503	ENSPVAG00000002134	PRPF8	93	98.503	Pteropus_vampyrus
ENSAMXG00000020291	prpf8	100	98.628	ENSPNYG00000016356	prpf8	100	98.628	Pundamilia_nyererei
ENSAMXG00000020291	prpf8	100	99.273	ENSPNAG00000009247	prpf8	100	99.273	Pygocentrus_nattereri
ENSAMXG00000020291	prpf8	100	97.688	ENSRNOG00000003495	Prpf8	100	97.688	Rattus_norvegicus
ENSAMXG00000020291	prpf8	100	97.731	ENSRBIG00000031219	PRPF8	100	97.731	Rhinopithecus_bieti
ENSAMXG00000020291	prpf8	100	97.731	ENSRROG00000038014	PRPF8	100	97.731	Rhinopithecus_roxellana
ENSAMXG00000020291	prpf8	99	62.516	YHR165C	PRP8	95	62.602	Saccharomyces_cerevisiae
ENSAMXG00000020291	prpf8	100	97.731	ENSSBOG00000029717	PRPF8	100	97.731	Saimiri_boliviensis_boliviensis
ENSAMXG00000020291	prpf8	100	97.688	ENSSHAG00000006167	PRPF8	100	97.688	Sarcophilus_harrisii
ENSAMXG00000020291	prpf8	100	98.506	ENSSFOG00015013905	prpf8	100	98.506	Scleropages_formosus
ENSAMXG00000020291	prpf8	100	98.845	ENSSMAG00000017736	prpf8	100	98.845	Scophthalmus_maximus
ENSAMXG00000020291	prpf8	100	99.059	ENSSDUG00000003029	prpf8	100	99.059	Seriola_dumerili
ENSAMXG00000020291	prpf8	68	99.562	ENSSLDG00000017096	prpf8	100	99.562	Seriola_lalandi_dorsalis
ENSAMXG00000020291	prpf8	87	94.411	ENSSARG00000002892	PRPF8	87	94.411	Sorex_araneus
ENSAMXG00000020291	prpf8	100	97.730	ENSSPUG00000007463	PRPF8	100	97.730	Sphenodon_punctatus
ENSAMXG00000020291	prpf8	100	98.546	ENSSPAG00000015639	prpf8	100	98.546	Stegastes_partitus
ENSAMXG00000020291	prpf8	100	97.731	ENSSSCG00000017817	PRPF8	100	97.731	Sus_scrofa
ENSAMXG00000020291	prpf8	52	98.604	ENSTGUG00000015597	-	95	98.604	Taeniopygia_guttata
ENSAMXG00000020291	prpf8	100	97.901	ENSTGUG00000005648	-	100	97.901	Taeniopygia_guttata
ENSAMXG00000020291	prpf8	100	98.589	ENSTRUG00000015906	prpf8	100	98.589	Takifugu_rubripes
ENSAMXG00000020291	prpf8	95	99.343	ENSTNIG00000003460	prpf8	99	99.343	Tetraodon_nigroviridis
ENSAMXG00000020291	prpf8	93	98.775	ENSTBEG00000006431	PRPF8	93	98.775	Tupaia_belangeri
ENSAMXG00000020291	prpf8	100	97.132	ENSTTRG00000006869	PRPF8	100	97.132	Tursiops_truncatus
ENSAMXG00000020291	prpf8	54	96.587	ENSUAMG00000015644	-	96	96.587	Ursus_americanus
ENSAMXG00000020291	prpf8	100	97.474	ENSUMAG00000009385	PRPF8	100	97.474	Ursus_maritimus
ENSAMXG00000020291	prpf8	71	98.621	ENSVPAG00000006063	-	71	98.621	Vicugna_pacos
ENSAMXG00000020291	prpf8	100	97.731	ENSVVUG00000021695	PRPF8	99	97.731	Vulpes_vulpes
ENSAMXG00000020291	prpf8	100	97.688	ENSXETG00000022259	prpf8	100	97.688	Xenopus_tropicalis
ENSAMXG00000020291	prpf8	100	98.462	ENSXCOG00000012775	prpf8	100	98.462	Xiphophorus_couchianus
ENSAMXG00000020291	prpf8	100	98.505	ENSXMAG00000008505	prpf8	100	98.505	Xiphophorus_maculatus