EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000020310 (Gene tree)
Gene ID: 103046212
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 5312 bases
Position: chrAPWO02001606.1:36022-41333
Accession: 103046212
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000020915	TUDOR	PF00567.24	3.6e-05	1	1
ENSAMXP00000038658	TUDOR	PF00567.24	7.3e-05	1	1
ENSAMXP00000038658	SMN	PF06003.12	5.4e-15	1	1
ENSAMXP00000020915	SMN	PF06003.12	5.8e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000020915	-	2276	XM_007258916	ENSAMXP00000020915	237 (aa)	XP_007258978	W5LM53
ENSAMXT00000048114	-	2072	-	ENSAMXP00000038658	254 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000020310's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000020310's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000020310	smndc1	100	76.471	ENSG00000119953	SMNDC1	100	76.471	Homo_sapiens
ENSAMXG00000020310	smndc1	100	82.353	ENSAPOG00000021772	smndc1	100	82.353	Acanthochromis_polyacanthus
ENSAMXG00000020310	smndc1	100	76.050	ENSAMEG00000005251	SMNDC1	100	76.050	Ailuropoda_melanoleuca
ENSAMXG00000020310	smndc1	100	82.773	ENSACIG00000004819	smndc1	100	82.773	Amphilophus_citrinellus
ENSAMXG00000020310	smndc1	100	81.513	ENSAOCG00000017869	smndc1	100	81.513	Amphiprion_ocellaris
ENSAMXG00000020310	smndc1	100	81.513	ENSAPEG00000007752	smndc1	100	81.513	Amphiprion_percula
ENSAMXG00000020310	smndc1	100	81.933	ENSATEG00000006830	smndc1	100	81.933	Anabas_testudineus
ENSAMXG00000020310	smndc1	83	76.263	ENSAPLG00000004322	SMNDC1	100	76.263	Anas_platyrhynchos
ENSAMXG00000020310	smndc1	100	76.891	ENSACAG00000005983	SMNDC1	100	76.891	Anolis_carolinensis
ENSAMXG00000020310	smndc1	100	76.050	ENSANAG00000032875	SMNDC1	100	76.050	Aotus_nancymaae
ENSAMXG00000020310	smndc1	100	82.353	ENSACLG00000016360	smndc1	100	82.353	Astatotilapia_calliptera
ENSAMXG00000020310	smndc1	100	75.630	ENSBTAG00000000551	SMNDC1	100	75.630	Bos_taurus
ENSAMXG00000020310	smndc1	100	76.050	ENSCJAG00000018624	SMNDC1	100	76.050	Callithrix_jacchus
ENSAMXG00000020310	smndc1	100	76.050	ENSCAFG00000010720	SMNDC1	100	76.050	Canis_familiaris
ENSAMXG00000020310	smndc1	100	76.050	ENSCAFG00020011913	SMNDC1	100	76.050	Canis_lupus_dingo
ENSAMXG00000020310	smndc1	100	75.630	ENSCHIG00000010604	SMNDC1	100	75.630	Capra_hircus
ENSAMXG00000020310	smndc1	100	76.471	ENSTSYG00000026454	SMNDC1	100	76.471	Carlito_syrichta
ENSAMXG00000020310	smndc1	84	72.637	ENSCAPG00000009132	SMNDC1	100	72.637	Cavia_aperea
ENSAMXG00000020310	smndc1	100	76.050	ENSCPOG00000031666	SMNDC1	100	76.050	Cavia_porcellus
ENSAMXG00000020310	smndc1	100	76.050	ENSCCAG00000021793	SMNDC1	100	76.050	Cebus_capucinus
ENSAMXG00000020310	smndc1	100	75.630	ENSCATG00000035910	SMNDC1	100	75.630	Cercocebus_atys
ENSAMXG00000020310	smndc1	100	76.050	ENSCLAG00000002838	SMNDC1	100	76.050	Chinchilla_lanigera
ENSAMXG00000020310	smndc1	100	76.050	ENSCSAG00000005169	SMNDC1	100	76.050	Chlorocebus_sabaeus
ENSAMXG00000020310	smndc1	81	71.503	ENSCHOG00000002936	SMNDC1	100	71.503	Choloepus_hoffmanni
ENSAMXG00000020310	smndc1	100	76.471	ENSCPBG00000012837	SMNDC1	100	76.471	Chrysemys_picta_bellii
ENSAMXG00000020310	smndc1	100	70.588	ENSCANG00000034620	-	100	70.588	Colobus_angolensis_palliatus
ENSAMXG00000020310	smndc1	100	60.759	ENSCANG00000036994	-	100	60.759	Colobus_angolensis_palliatus
ENSAMXG00000020310	smndc1	100	76.050	ENSCANG00000031720	-	100	76.050	Colobus_angolensis_palliatus
ENSAMXG00000020310	smndc1	100	75.630	ENSCGRG00001012973	Smndc1	100	75.630	Cricetulus_griseus_chok1gshd
ENSAMXG00000020310	smndc1	100	75.630	ENSCGRG00000012396	Smndc1	100	75.630	Cricetulus_griseus_crigri
ENSAMXG00000020310	smndc1	100	79.747	ENSCSEG00000015621	smndc1	100	79.747	Cynoglossus_semilaevis
ENSAMXG00000020310	smndc1	100	79.412	ENSCVAG00000020432	smndc1	100	79.412	Cyprinodon_variegatus
ENSAMXG00000020310	smndc1	100	81.435	ENSDARG00000056235	smndc1	100	81.435	Danio_rerio
ENSAMXG00000020310	smndc1	100	76.050	ENSDNOG00000016387	SMNDC1	83	76.050	Dasypus_novemcinctus
ENSAMXG00000020310	smndc1	100	76.050	ENSDORG00000023715	Smndc1	100	76.050	Dipodomys_ordii
ENSAMXG00000020310	smndc1	95	41.129	FBgn0039977	CG17454	98	42.742	Drosophila_melanogaster
ENSAMXG00000020310	smndc1	100	68.050	ENSEBUG00000010929	smndc1	100	68.880	Eptatretus_burgeri
ENSAMXG00000020310	smndc1	100	76.050	ENSEASG00005014930	SMNDC1	100	76.050	Equus_asinus_asinus
ENSAMXG00000020310	smndc1	100	76.050	ENSECAG00000029973	SMNDC1	100	76.050	Equus_caballus
ENSAMXG00000020310	smndc1	60	86.458	ENSEEUG00000013407	-	72	86.458	Erinaceus_europaeus
ENSAMXG00000020310	smndc1	100	83.122	ENSELUG00000000227	smndc1	100	83.122	Esox_lucius
ENSAMXG00000020310	smndc1	100	76.050	ENSFCAG00000027353	SMNDC1	100	76.050	Felis_catus
ENSAMXG00000020310	smndc1	100	77.311	ENSFALG00000002306	SMNDC1	100	77.311	Ficedula_albicollis
ENSAMXG00000020310	smndc1	100	76.471	ENSFDAG00000006468	SMNDC1	100	76.471	Fukomys_damarensis
ENSAMXG00000020310	smndc1	100	80.672	ENSFHEG00000020150	smndc1	100	80.672	Fundulus_heteroclitus
ENSAMXG00000020310	smndc1	100	80.169	ENSGMOG00000016585	smndc1	100	80.169	Gadus_morhua
ENSAMXG00000020310	smndc1	100	77.311	ENSGALG00000008561	SMNDC1	100	77.311	Gallus_gallus
ENSAMXG00000020310	smndc1	100	79.832	ENSGAFG00000011582	smndc1	100	79.832	Gambusia_affinis
ENSAMXG00000020310	smndc1	100	81.513	ENSGACG00000009468	smndc1	100	81.513	Gasterosteus_aculeatus
ENSAMXG00000020310	smndc1	100	76.471	ENSGAGG00000024547	SMNDC1	100	76.471	Gopherus_agassizii
ENSAMXG00000020310	smndc1	100	76.050	ENSGGOG00000010071	SMNDC1	100	76.050	Gorilla_gorilla
ENSAMXG00000020310	smndc1	100	82.353	ENSHBUG00000017596	smndc1	100	82.353	Haplochromis_burtoni
ENSAMXG00000020310	smndc1	100	55.144	ENSHGLG00000001157	-	100	54.321	Heterocephalus_glaber_female
ENSAMXG00000020310	smndc1	100	76.471	ENSHGLG00000013390	-	100	76.471	Heterocephalus_glaber_female
ENSAMXG00000020310	smndc1	100	76.471	ENSHGLG00100004814	-	100	76.471	Heterocephalus_glaber_male
ENSAMXG00000020310	smndc1	100	61.475	ENSHGLG00100004278	-	100	59.919	Heterocephalus_glaber_male
ENSAMXG00000020310	smndc1	100	77.824	ENSHCOG00000000783	smndc1	100	77.824	Hippocampus_comes
ENSAMXG00000020310	smndc1	100	87.342	ENSIPUG00000004217	smndc1	100	87.342	Ictalurus_punctatus
ENSAMXG00000020310	smndc1	100	76.471	ENSSTOG00000006088	SMNDC1	100	76.471	Ictidomys_tridecemlineatus
ENSAMXG00000020310	smndc1	100	75.630	ENSJJAG00000019974	Smndc1	100	75.630	Jaculus_jaculus
ENSAMXG00000020310	smndc1	100	81.092	ENSKMAG00000020134	smndc1	100	80.672	Kryptolebias_marmoratus
ENSAMXG00000020310	smndc1	100	79.747	ENSLBEG00000004598	smndc1	100	79.747	Labrus_bergylta
ENSAMXG00000020310	smndc1	100	76.891	ENSLACG00000007784	SMNDC1	100	76.891	Latimeria_chalumnae
ENSAMXG00000020310	smndc1	100	78.903	ENSLOCG00000012355	smndc1	100	78.903	Lepisosteus_oculatus
ENSAMXG00000020310	smndc1	100	76.471	ENSLAFG00000014353	SMNDC1	100	76.471	Loxodonta_africana
ENSAMXG00000020310	smndc1	100	76.050	ENSMFAG00000002433	-	100	76.050	Macaca_fascicularis
ENSAMXG00000020310	smndc1	100	63.291	ENSMFAG00000038381	-	100	63.291	Macaca_fascicularis
ENSAMXG00000020310	smndc1	100	63.291	ENSMMUG00000045875	-	100	63.291	Macaca_mulatta
ENSAMXG00000020310	smndc1	100	76.050	ENSMMUG00000007775	SMNDC1	100	76.050	Macaca_mulatta
ENSAMXG00000020310	smndc1	100	67.227	ENSMNEG00000033853	-	100	67.227	Macaca_nemestrina
ENSAMXG00000020310	smndc1	100	76.050	ENSMNEG00000042963	-	100	76.050	Macaca_nemestrina
ENSAMXG00000020310	smndc1	100	71.548	ENSMLEG00000040236	SMNDC1	100	71.130	Mandrillus_leucophaeus
ENSAMXG00000020310	smndc1	89	76.995	ENSMAMG00000018233	smndc1	87	76.995	Mastacembelus_armatus
ENSAMXG00000020310	smndc1	100	82.353	ENSMZEG00005027510	smndc1	100	82.353	Maylandia_zebra
ENSAMXG00000020310	smndc1	99	68.776	ENSMGAG00000010777	SMNDC1	99	68.776	Meleagris_gallopavo
ENSAMXG00000020310	smndc1	100	76.050	ENSMAUG00000012243	-	100	76.050	Mesocricetus_auratus
ENSAMXG00000020310	smndc1	99	60.593	ENSMAUG00000005459	-	93	62.447	Mesocricetus_auratus
ENSAMXG00000020310	smndc1	100	66.245	ENSMICG00000031640	-	100	66.245	Microcebus_murinus
ENSAMXG00000020310	smndc1	100	75.630	ENSMICG00000027336	-	100	75.630	Microcebus_murinus
ENSAMXG00000020310	smndc1	100	75.630	ENSMOCG00000002458	Smndc1	100	75.630	Microtus_ochrogaster
ENSAMXG00000020310	smndc1	100	79.412	ENSMMOG00000008856	smndc1	100	79.412	Mola_mola
ENSAMXG00000020310	smndc1	100	76.891	ENSMODG00000010542	SMNDC1	100	76.891	Monodelphis_domestica
ENSAMXG00000020310	smndc1	100	80.252	ENSMALG00000017598	smndc1	100	80.252	Monopterus_albus
ENSAMXG00000020310	smndc1	100	75.630	MGP_CAROLIEiJ_G0023072	Smndc1	100	75.630	Mus_caroli
ENSAMXG00000020310	smndc1	100	76.050	ENSMUSG00000025024	Smndc1	100	76.050	Mus_musculus
ENSAMXG00000020310	smndc1	100	76.471	MGP_PahariEiJ_G0014560	Smndc1	100	76.471	Mus_pahari
ENSAMXG00000020310	smndc1	100	76.050	MGP_SPRETEiJ_G0023993	Smndc1	100	76.050	Mus_spretus
ENSAMXG00000020310	smndc1	100	76.050	ENSMPUG00000002089	SMNDC1	100	76.050	Mustela_putorius_furo
ENSAMXG00000020310	smndc1	100	76.471	ENSMLUG00000016007	SMNDC1	100	76.471	Myotis_lucifugus
ENSAMXG00000020310	smndc1	100	77.406	ENSNGAG00000006833	Smndc1	100	77.406	Nannospalax_galili
ENSAMXG00000020310	smndc1	100	82.353	ENSNBRG00000017089	smndc1	100	82.353	Neolamprologus_brichardi
ENSAMXG00000020310	smndc1	100	76.050	ENSNLEG00000015471	SMNDC1	100	76.050	Nomascus_leucogenys
ENSAMXG00000020310	smndc1	70	59.639	ENSMEUG00000010120	-	99	53.960	Notamacropus_eugenii
ENSAMXG00000020310	smndc1	100	76.050	ENSOPRG00000015348	SMNDC1	100	76.050	Ochotona_princeps
ENSAMXG00000020310	smndc1	100	54.852	ENSODEG00000007594	-	100	52.743	Octodon_degus
ENSAMXG00000020310	smndc1	100	82.353	ENSONIG00000000434	smndc1	100	82.353	Oreochromis_niloticus
ENSAMXG00000020310	smndc1	100	76.471	ENSOANG00000001598	SMNDC1	100	76.471	Ornithorhynchus_anatinus
ENSAMXG00000020310	smndc1	100	56.118	ENSOCUG00000012274	-	100	58.650	Oryctolagus_cuniculus
ENSAMXG00000020310	smndc1	100	75.630	ENSOCUG00000008145	-	100	75.630	Oryctolagus_cuniculus
ENSAMXG00000020310	smndc1	100	78.992	ENSORLG00000005934	smndc1	98	78.455	Oryzias_latipes
ENSAMXG00000020310	smndc1	100	78.992	ENSORLG00020008796	smndc1	98	78.138	Oryzias_latipes_hni
ENSAMXG00000020310	smndc1	100	78.992	ENSORLG00015013666	smndc1	100	78.992	Oryzias_latipes_hsok
ENSAMXG00000020310	smndc1	100	79.747	ENSOMEG00000007590	smndc1	100	79.747	Oryzias_melastigma
ENSAMXG00000020310	smndc1	100	75.630	ENSOGAG00000000571	SMNDC1	100	75.630	Otolemur_garnettii
ENSAMXG00000020310	smndc1	100	75.630	ENSOARG00000009500	SMNDC1	100	75.630	Ovis_aries
ENSAMXG00000020310	smndc1	100	76.050	ENSPPAG00000027815	SMNDC1	100	76.050	Pan_paniscus
ENSAMXG00000020310	smndc1	100	76.050	ENSPPRG00000013749	SMNDC1	100	76.050	Panthera_pardus
ENSAMXG00000020310	smndc1	100	76.050	ENSPTIG00000011451	SMNDC1	100	76.050	Panthera_tigris_altaica
ENSAMXG00000020310	smndc1	100	76.050	ENSPTRG00000002937	SMNDC1	100	76.050	Pan_troglodytes
ENSAMXG00000020310	smndc1	100	76.050	ENSPANG00000020805	-	100	76.050	Papio_anubis
ENSAMXG00000020310	smndc1	100	72.574	ENSPANG00000031346	-	100	72.574	Papio_anubis
ENSAMXG00000020310	smndc1	100	79.325	ENSPKIG00000017164	smndc1	100	79.325	Paramormyrops_kingsleyae
ENSAMXG00000020310	smndc1	100	76.891	ENSPSIG00000012257	SMNDC1	100	76.891	Pelodiscus_sinensis
ENSAMXG00000020310	smndc1	100	79.747	ENSPMGG00000015651	smndc1	100	79.747	Periophthalmus_magnuspinnatus
ENSAMXG00000020310	smndc1	100	76.050	ENSPEMG00000022058	Smndc1	100	76.050	Peromyscus_maniculatus_bairdii
ENSAMXG00000020310	smndc1	100	67.901	ENSPMAG00000007705	smndc1	100	67.901	Petromyzon_marinus
ENSAMXG00000020310	smndc1	100	76.891	ENSPCIG00000018419	SMNDC1	100	76.891	Phascolarctos_cinereus
ENSAMXG00000020310	smndc1	95	58.222	ENSPCIG00000009693	-	98	58.222	Phascolarctos_cinereus
ENSAMXG00000020310	smndc1	100	80.252	ENSPFOG00000017113	smndc1	100	80.252	Poecilia_formosa
ENSAMXG00000020310	smndc1	100	80.252	ENSPLAG00000010372	smndc1	100	80.252	Poecilia_latipinna
ENSAMXG00000020310	smndc1	100	81.092	ENSPMEG00000012288	smndc1	100	81.092	Poecilia_mexicana
ENSAMXG00000020310	smndc1	100	79.412	ENSPREG00000012279	smndc1	100	79.412	Poecilia_reticulata
ENSAMXG00000020310	smndc1	100	76.050	ENSPPYG00000002643	SMNDC1	100	76.050	Pongo_abelii
ENSAMXG00000020310	smndc1	81	73.057	ENSPCAG00000016183	SMNDC1	100	73.057	Procavia_capensis
ENSAMXG00000020310	smndc1	100	76.050	ENSPCOG00000024343	SMNDC1	100	76.050	Propithecus_coquereli
ENSAMXG00000020310	smndc1	77	89.583	ENSPVAG00000004368	SMNDC1	77	89.583	Pteropus_vampyrus
ENSAMXG00000020310	smndc1	83	80.808	ENSPNYG00000024093	smndc1	86	80.808	Pundamilia_nyererei
ENSAMXG00000020310	smndc1	100	90.295	ENSPNAG00000025285	smndc1	100	90.295	Pygocentrus_nattereri
ENSAMXG00000020310	smndc1	100	75.630	ENSRNOG00000014833	Smndc1	100	75.630	Rattus_norvegicus
ENSAMXG00000020310	smndc1	100	75.630	ENSRBIG00000000224	-	100	75.630	Rhinopithecus_bieti
ENSAMXG00000020310	smndc1	100	62.025	ENSRBIG00000032452	-	100	62.025	Rhinopithecus_bieti
ENSAMXG00000020310	smndc1	100	62.447	ENSRROG00000039125	-	100	62.447	Rhinopithecus_roxellana
ENSAMXG00000020310	smndc1	100	76.050	ENSRROG00000044992	-	100	76.050	Rhinopithecus_roxellana
ENSAMXG00000020310	smndc1	100	76.050	ENSSBOG00000026789	SMNDC1	100	76.050	Saimiri_boliviensis_boliviensis
ENSAMXG00000020310	smndc1	100	76.891	ENSSHAG00000015189	SMNDC1	100	76.891	Sarcophilus_harrisii
ENSAMXG00000020310	smndc1	100	79.325	ENSSFOG00015008311	smndc1	100	79.325	Scleropages_formosus
ENSAMXG00000020310	smndc1	100	80.672	ENSSMAG00000020118	smndc1	100	80.672	Scophthalmus_maximus
ENSAMXG00000020310	smndc1	100	82.773	ENSSDUG00000015330	smndc1	100	82.773	Seriola_dumerili
ENSAMXG00000020310	smndc1	100	82.773	ENSSLDG00000017325	smndc1	100	82.773	Seriola_lalandi_dorsalis
ENSAMXG00000020310	smndc1	100	76.050	ENSSARG00000006063	SMNDC1	100	76.050	Sorex_araneus
ENSAMXG00000020310	smndc1	100	76.891	ENSSPUG00000004574	SMNDC1	100	76.891	Sphenodon_punctatus
ENSAMXG00000020310	smndc1	100	81.513	ENSSPAG00000000338	smndc1	100	81.513	Stegastes_partitus
ENSAMXG00000020310	smndc1	100	76.471	ENSSSCG00000030507	SMNDC1	100	76.471	Sus_scrofa
ENSAMXG00000020310	smndc1	100	77.311	ENSTGUG00000010599	SMNDC1	100	77.311	Taeniopygia_guttata
ENSAMXG00000020310	smndc1	100	76.471	ENSTRUG00000023281	smndc1	100	76.471	Takifugu_rubripes
ENSAMXG00000020310	smndc1	100	76.471	ENSTNIG00000013331	smndc1	100	76.471	Tetraodon_nigroviridis
ENSAMXG00000020310	smndc1	100	75.630	ENSTBEG00000014337	SMNDC1	100	75.630	Tupaia_belangeri
ENSAMXG00000020310	smndc1	100	76.050	ENSUAMG00000008142	SMNDC1	100	76.050	Ursus_americanus
ENSAMXG00000020310	smndc1	100	76.050	ENSUMAG00000023722	SMNDC1	100	76.050	Ursus_maritimus
ENSAMXG00000020310	smndc1	83	75.758	ENSVPAG00000003402	SMNDC1	100	75.758	Vicugna_pacos
ENSAMXG00000020310	smndc1	100	76.050	ENSVVUG00000007820	SMNDC1	100	76.050	Vulpes_vulpes
ENSAMXG00000020310	smndc1	59	63.380	ENSXETG00000015415	SMNDC1	100	63.380	Xenopus_tropicalis
ENSAMXG00000020310	smndc1	100	79.747	ENSXCOG00000009159	smndc1	100	79.747	Xiphophorus_couchianus
ENSAMXG00000020310	smndc1	100	79.412	ENSXMAG00000012755	smndc1	100	79.412	Xiphophorus_maculatus