EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000020607 (Gene tree)
Gene ID: 103033393
Gene Symbol: pum1
Alias: fb96a03|si:ch211-285e16.1|wu:fb96a03|wu:fb96a08|zgc:63671
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 17383 bases
Position: chr23:29050038-29067420
Accession: 103033393
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000021221	PUF	PF00806.19	6.7e-69	1	8
ENSAMXP00000021221	PUF	PF00806.19	6.7e-69	2	8
ENSAMXP00000021221	PUF	PF00806.19	6.7e-69	3	8
ENSAMXP00000021221	PUF	PF00806.19	6.7e-69	4	8
ENSAMXP00000021221	PUF	PF00806.19	6.7e-69	5	8
ENSAMXP00000021221	PUF	PF00806.19	6.7e-69	6	8
ENSAMXP00000021221	PUF	PF00806.19	6.7e-69	7	8
ENSAMXP00000021221	PUF	PF00806.19	6.7e-69	8	8
ENSAMXP00000040039	PUF	PF00806.19	8.2e-69	1	8
ENSAMXP00000040039	PUF	PF00806.19	8.2e-69	2	8
ENSAMXP00000040039	PUF	PF00806.19	8.2e-69	3	8
ENSAMXP00000040039	PUF	PF00806.19	8.2e-69	4	8
ENSAMXP00000040039	PUF	PF00806.19	8.2e-69	5	8
ENSAMXP00000040039	PUF	PF00806.19	8.2e-69	6	8
ENSAMXP00000040039	PUF	PF00806.19	8.2e-69	7	8
ENSAMXP00000040039	PUF	PF00806.19	8.2e-69	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000052418	-	8388	-	ENSAMXP00000040039	1221 (aa)	-	-
ENSAMXT00000021221	-	8175	XM_007245671	ENSAMXP00000021221	1194 (aa)	XP_007245733	W5LN09

Gene Model

Click here to download ENSAMXG00000020607's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000020607's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000020607	pum1	92	92.754	ENSG00000134644	PUM1	99	92.754	Homo_sapiens
ENSAMXG00000020607	pum1	96	82.373	ENSAPOG00000021632	pum1	100	95.904	Acanthochromis_polyacanthus
ENSAMXG00000020607	pum1	97	78.952	ENSAMEG00000017656	PUM1	97	78.369	Ailuropoda_melanoleuca
ENSAMXG00000020607	pum1	96	82.112	ENSACIG00000021013	pum1	100	82.453	Amphilophus_citrinellus
ENSAMXG00000020607	pum1	96	82.373	ENSAOCG00000003944	pum1	100	82.373	Amphiprion_ocellaris
ENSAMXG00000020607	pum1	96	82.373	ENSAPEG00000014550	pum1	100	82.373	Amphiprion_percula
ENSAMXG00000020607	pum1	96	82.119	ENSATEG00000016004	pum1	100	82.034	Anabas_testudineus
ENSAMXG00000020607	pum1	96	79.950	ENSAPLG00000009351	PUM1	100	79.783	Anas_platyrhynchos
ENSAMXG00000020607	pum1	97	78.846	ENSACAG00000000682	PUM1	98	79.181	Anolis_carolinensis
ENSAMXG00000020607	pum1	92	92.512	ENSANAG00000027865	PUM1	100	84.367	Aotus_nancymaae
ENSAMXG00000020607	pum1	88	82.929	ENSACLG00000019354	pum1	100	83.582	Astatotilapia_calliptera
ENSAMXG00000020607	pum1	92	93.237	ENSBTAG00000018979	PUM1	100	84.511	Bos_taurus
ENSAMXG00000020607	pum1	92	92.754	ENSCJAG00000006035	PUM1	100	92.754	Callithrix_jacchus
ENSAMXG00000020607	pum1	96	78.254	ENSCAFG00000011205	PUM1	100	76.258	Canis_familiaris
ENSAMXG00000020607	pum1	84	92.754	ENSCAFG00020024616	PUM1	98	84.615	Canis_lupus_dingo
ENSAMXG00000020607	pum1	92	92.754	ENSCHIG00000012952	PUM1	100	80.588	Capra_hircus
ENSAMXG00000020607	pum1	92	83.575	ENSTSYG00000008868	PUM1	100	84.491	Carlito_syrichta
ENSAMXG00000020607	pum1	96	78.947	ENSCPOG00000031613	PUM1	100	84.367	Cavia_porcellus
ENSAMXG00000020607	pum1	92	93.237	ENSCATG00000017991	PUM1	93	93.237	Cercocebus_atys
ENSAMXG00000020607	pum1	92	92.512	ENSCLAG00000007662	PUM1	100	92.512	Chinchilla_lanigera
ENSAMXG00000020607	pum1	96	78.063	ENSCSAG00000001028	PUM1	100	77.152	Chlorocebus_sabaeus
ENSAMXG00000020607	pum1	90	68.331	ENSCHOG00000010245	PUM1	93	67.760	Choloepus_hoffmanni
ENSAMXG00000020607	pum1	92	93.478	ENSCPBG00000009288	PUM1	100	85.236	Chrysemys_picta_bellii
ENSAMXG00000020607	pum1	92	92.754	ENSCANG00000042606	PUM1	100	92.754	Colobus_angolensis_palliatus
ENSAMXG00000020607	pum1	96	78.661	ENSCGRG00001024949	Pum1	100	83.478	Cricetulus_griseus_chok1gshd
ENSAMXG00000020607	pum1	96	78.661	ENSCGRG00000014197	Pum1	100	83.478	Cricetulus_griseus_crigri
ENSAMXG00000020607	pum1	88	82.090	ENSCSEG00000015981	pum1	100	83.116	Cynoglossus_semilaevis
ENSAMXG00000020607	pum1	96	81.441	ENSCVAG00000007043	pum1	100	81.441	Cyprinodon_variegatus
ENSAMXG00000020607	pum1	96	95.139	ENSDARG00000099256	pum1	100	95.139	Danio_rerio
ENSAMXG00000020607	pum1	96	79.114	ENSDNOG00000010939	PUM1	100	78.530	Dasypus_novemcinctus
ENSAMXG00000020607	pum1	86	75.097	ENSETEG00000004355	PUM1	87	76.163	Echinops_telfairi
ENSAMXG00000020607	pum1	96	79.097	ENSEASG00005010813	PUM1	100	78.595	Equus_asinus_asinus
ENSAMXG00000020607	pum1	96	78.947	ENSECAG00000021369	PUM1	100	78.446	Equus_caballus
ENSAMXG00000020607	pum1	74	92.667	ENSEEUG00000003871	PUM1	75	92.667	Erinaceus_europaeus
ENSAMXG00000020607	pum1	96	82.378	ENSELUG00000002409	pum1	100	80.844	Esox_lucius
ENSAMXG00000020607	pum1	92	93.237	ENSFCAG00000010374	PUM1	100	84.615	Felis_catus
ENSAMXG00000020607	pum1	97	79.651	ENSFALG00000001214	PUM1	97	78.488	Ficedula_albicollis
ENSAMXG00000020607	pum1	96	78.947	ENSFDAG00000011319	PUM1	100	84.367	Fukomys_damarensis
ENSAMXG00000020607	pum1	93	92.525	ENSGALG00000042598	PUM1	98	93.125	Gallus_gallus
ENSAMXG00000020607	pum1	96	81.780	ENSGAFG00000015617	pum1	100	81.864	Gambusia_affinis
ENSAMXG00000020607	pum1	96	81.431	ENSGACG00000005717	pum1	100	81.601	Gasterosteus_aculeatus
ENSAMXG00000020607	pum1	93	92.727	ENSGAGG00000001290	PUM1	98	93.333	Gopherus_agassizii
ENSAMXG00000020607	pum1	92	92.754	ENSGGOG00000011983	PUM1	100	92.754	Gorilla_gorilla
ENSAMXG00000020607	pum1	96	82.119	ENSHBUG00000018718	pum1	100	82.203	Haplochromis_burtoni
ENSAMXG00000020607	pum1	96	78.864	ENSHGLG00000013819	Pum1	100	84.243	Heterocephalus_glaber_female
ENSAMXG00000020607	pum1	96	78.864	ENSHGLG00100008621	Pum1	100	84.243	Heterocephalus_glaber_male
ENSAMXG00000020607	pum1	96	96.204	ENSIPUG00000020421	pum1	100	96.204	Ictalurus_punctatus
ENSAMXG00000020607	pum1	96	79.181	ENSSTOG00000010757	PUM1	100	84.491	Ictidomys_tridecemlineatus
ENSAMXG00000020607	pum1	96	79.181	ENSJJAG00000000530	Pum1	100	84.491	Jaculus_jaculus
ENSAMXG00000020607	pum1	96	81.780	ENSKMAG00000003481	pum1	100	82.034	Kryptolebias_marmoratus
ENSAMXG00000020607	pum1	96	81.425	ENSLBEG00000002527	pum1	100	81.510	Labrus_bergylta
ENSAMXG00000020607	pum1	97	77.121	ENSLACG00000017188	PUM1	100	76.872	Latimeria_chalumnae
ENSAMXG00000020607	pum1	97	85.092	ENSLOCG00000005210	pum1	100	84.925	Lepisosteus_oculatus
ENSAMXG00000020607	pum1	96	78.010	ENSLAFG00000003178	PUM1	100	78.512	Loxodonta_africana
ENSAMXG00000020607	pum1	92	93.237	ENSMFAG00000010291	PUM1	100	93.237	Macaca_fascicularis
ENSAMXG00000020607	pum1	92	92.754	ENSMMUG00000013520	PUM1	100	92.754	Macaca_mulatta
ENSAMXG00000020607	pum1	92	92.754	ENSMNEG00000034639	PUM1	100	92.754	Macaca_nemestrina
ENSAMXG00000020607	pum1	92	92.754	ENSMLEG00000038743	PUM1	100	92.754	Mandrillus_leucophaeus
ENSAMXG00000020607	pum1	96	81.864	ENSMAMG00000011606	pum1	100	82.034	Mastacembelus_armatus
ENSAMXG00000020607	pum1	96	82.119	ENSMZEG00005005834	pum1	100	82.203	Maylandia_zebra
ENSAMXG00000020607	pum1	97	79.534	ENSMGAG00000000724	PUM1	100	81.007	Meleagris_gallopavo
ENSAMXG00000020607	pum1	96	78.745	ENSMAUG00000022090	Pum1	100	83.333	Mesocricetus_auratus
ENSAMXG00000020607	pum1	92	92.995	ENSMICG00000007713	-	100	84.615	Microcebus_murinus
ENSAMXG00000020607	pum1	90	89.639	ENSMICG00000012213	-	100	89.639	Microcebus_murinus
ENSAMXG00000020607	pum1	96	78.930	ENSMOCG00000015463	Pum1	100	83.727	Microtus_ochrogaster
ENSAMXG00000020607	pum1	96	78.297	ENSMODG00000017067	PUM1	100	78.715	Monodelphis_domestica
ENSAMXG00000020607	pum1	96	78.344	MGP_CAROLIEiJ_G0026549	Pum1	100	83.871	Mus_caroli
ENSAMXG00000020607	pum1	96	78.344	ENSMUSG00000028580	Pum1	100	83.747	Mus_musculus
ENSAMXG00000020607	pum1	96	78.261	MGP_PahariEiJ_G0028881	Pum1	100	83.747	Mus_pahari
ENSAMXG00000020607	pum1	96	78.344	MGP_SPRETEiJ_G0027529	Pum1	100	83.747	Mus_spretus
ENSAMXG00000020607	pum1	96	79.013	ENSMPUG00000015454	PUM1	100	78.595	Mustela_putorius_furo
ENSAMXG00000020607	pum1	96	78.947	ENSMLUG00000006490	PUM1	100	78.363	Myotis_lucifugus
ENSAMXG00000020607	pum1	96	78.930	ENSNGAG00000002378	Pum1	100	84.491	Nannospalax_galili
ENSAMXG00000020607	pum1	77	87.266	ENSNBRG00000010689	pum1	100	87.516	Neolamprologus_brichardi
ENSAMXG00000020607	pum1	92	89.614	ENSNLEG00000001151	PUM1	100	89.614	Nomascus_leucogenys
ENSAMXG00000020607	pum1	66	83.432	ENSMEUG00000000976	-	69	85.714	Notamacropus_eugenii
ENSAMXG00000020607	pum1	80	90.654	ENSOPRG00000001776	PUM1	70	91.393	Ochotona_princeps
ENSAMXG00000020607	pum1	96	79.097	ENSODEG00000003465	PUM1	100	84.491	Octodon_degus
ENSAMXG00000020607	pum1	96	82.288	ENSONIG00000002290	pum1	100	82.288	Oreochromis_niloticus
ENSAMXG00000020607	pum1	81	66.154	ENSOANG00000004902	-	100	66.530	Ornithorhynchus_anatinus
ENSAMXG00000020607	pum1	96	78.912	ENSOCUG00000008641	PUM1	99	78.494	Oryctolagus_cuniculus
ENSAMXG00000020607	pum1	96	81.757	ENSORLG00000011482	pum1	100	81.419	Oryzias_latipes
ENSAMXG00000020607	pum1	96	81.757	ENSORLG00020019461	pum1	100	81.334	Oryzias_latipes_hni
ENSAMXG00000020607	pum1	96	81.841	ENSORLG00015011375	pum1	100	81.334	Oryzias_latipes_hsok
ENSAMXG00000020607	pum1	96	76.544	ENSOGAG00000011063	PUM1	100	76.294	Otolemur_garnettii
ENSAMXG00000020607	pum1	92	92.754	ENSOARG00000001899	PUM1	100	77.750	Ovis_aries
ENSAMXG00000020607	pum1	92	92.754	ENSPPAG00000044003	PUM1	100	92.754	Pan_paniscus
ENSAMXG00000020607	pum1	96	79.264	ENSPPRG00000001370	PUM1	100	84.615	Panthera_pardus
ENSAMXG00000020607	pum1	96	79.097	ENSPTIG00000010798	PUM1	100	84.367	Panthera_tigris_altaica
ENSAMXG00000020607	pum1	92	92.754	ENSPTRG00000000453	PUM1	100	92.754	Pan_troglodytes
ENSAMXG00000020607	pum1	92	93.237	ENSPANG00000016338	PUM1	100	93.237	Papio_anubis
ENSAMXG00000020607	pum1	96	79.449	ENSPKIG00000010578	pum1	100	80.034	Paramormyrops_kingsleyae
ENSAMXG00000020607	pum1	96	79.181	ENSPSIG00000014118	PUM1	100	79.264	Pelodiscus_sinensis
ENSAMXG00000020607	pum1	54	89.513	ENSPMGG00000005836	pum1	100	79.157	Periophthalmus_magnuspinnatus
ENSAMXG00000020607	pum1	96	78.745	ENSPEMG00000010009	Pum1	100	83.333	Peromyscus_maniculatus_bairdii
ENSAMXG00000020607	pum1	92	93.237	ENSPCIG00000014151	PUM1	100	93.237	Phascolarctos_cinereus
ENSAMXG00000020607	pum1	92	82.948	ENSPFOG00000007289	pum1	99	85.340	Poecilia_formosa
ENSAMXG00000020607	pum1	96	80.132	ENSPLAG00000007256	pum1	100	82.458	Poecilia_latipinna
ENSAMXG00000020607	pum1	88	83.117	ENSPMEG00000019543	pum1	99	82.468	Poecilia_mexicana
ENSAMXG00000020607	pum1	96	81.949	ENSPREG00000005195	pum1	100	85.049	Poecilia_reticulata
ENSAMXG00000020607	pum1	96	77.623	ENSPPYG00000001621	PUM1	100	77.213	Pongo_abelii
ENSAMXG00000020607	pum1	74	93.210	ENSPCAG00000001979	PUM1	74	93.210	Procavia_capensis
ENSAMXG00000020607	pum1	92	92.995	ENSPCOG00000004398	PUM1	100	84.615	Propithecus_coquereli
ENSAMXG00000020607	pum1	97	77.129	ENSPVAG00000005207	PUM1	97	76.711	Pteropus_vampyrus
ENSAMXG00000020607	pum1	96	82.203	ENSPNYG00000009518	pum1	100	82.288	Pundamilia_nyererei
ENSAMXG00000020607	pum1	96	98.872	ENSPNAG00000026728	pum1	100	98.925	Pygocentrus_nattereri
ENSAMXG00000020607	pum1	96	78.512	ENSRNOG00000011709	Pum1	100	78.094	Rattus_norvegicus
ENSAMXG00000020607	pum1	92	93.237	ENSRBIG00000042521	PUM1	100	93.237	Rhinopithecus_bieti
ENSAMXG00000020607	pum1	92	92.754	ENSRROG00000020156	PUM1	100	92.754	Rhinopithecus_roxellana
ENSAMXG00000020607	pum1	92	92.754	ENSSBOG00000032037	PUM1	100	84.491	Saimiri_boliviensis_boliviensis
ENSAMXG00000020607	pum1	96	78.214	ENSSHAG00000010918	PUM1	100	78.798	Sarcophilus_harrisii
ENSAMXG00000020607	pum1	96	82.373	ENSSDUG00000009021	pum1	100	82.373	Seriola_dumerili
ENSAMXG00000020607	pum1	91	82.563	ENSSLDG00000009667	pum1	100	82.983	Seriola_lalandi_dorsalis
ENSAMXG00000020607	pum1	90	81.341	ENSSARG00000003055	PUM1	92	81.229	Sorex_araneus
ENSAMXG00000020607	pum1	96	79.682	ENSSPUG00000006267	PUM1	100	79.264	Sphenodon_punctatus
ENSAMXG00000020607	pum1	96	82.373	ENSSPAG00000016636	pum1	100	82.373	Stegastes_partitus
ENSAMXG00000020607	pum1	92	93.237	ENSSSCG00000003591	PUM1	94	92.083	Sus_scrofa
ENSAMXG00000020607	pum1	96	82.288	ENSTRUG00000013121	pum1	100	82.203	Takifugu_rubripes
ENSAMXG00000020607	pum1	90	80.987	ENSTTRG00000007436	PUM1	89	81.187	Tursiops_truncatus
ENSAMXG00000020607	pum1	95	77.564	ENSUAMG00000018262	-	100	77.106	Ursus_americanus
ENSAMXG00000020607	pum1	92	93.237	ENSUMAG00000009211	PUM1	57	93.237	Ursus_maritimus
ENSAMXG00000020607	pum1	90	84.864	ENSVPAG00000005902	PUM1	92	84.988	Vicugna_pacos
ENSAMXG00000020607	pum1	92	93.237	ENSVVUG00000014631	PUM1	100	80.398	Vulpes_vulpes
ENSAMXG00000020607	pum1	97	75.561	ENSXETG00000012904	pum1	100	75.917	Xenopus_tropicalis
ENSAMXG00000020607	pum1	56	92.205	ENSXMAG00000002945	pum1	100	82.563	Xiphophorus_maculatus