EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000020648 (Gene tree)
Gene ID: 103032383
Gene Symbol: setd1ba
Alias: im:7156157|si:dkey-237o15.4
Full Name: SET domain containing 1B
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 21208 bases
Position: chr20:19079813-19101020
Accession: 103032383
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000021274	RRM_1	PF00076.22	2.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000021274	-	9931	XM_007254983	ENSAMXP00000021274	1849 (aa)	XP_007255045	W5LN62

Gene Model

Click here to download ENSAMXG00000020648's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex00310	Lysine degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000020648's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000020648	setd1ba	97	61.609	ENSAOCG00000012148	setd1ba	57	64.615	Amphiprion_ocellaris
ENSAMXG00000020648	setd1ba	91	62.707	ENSATEG00000021563	setd1ba	96	62.329	Anabas_testudineus
ENSAMXG00000020648	setd1ba	87	56.617	ENSAPLG00000005217	SETD1B	65	83.735	Anas_platyrhynchos
ENSAMXG00000020648	setd1ba	54	75.921	ENSCLAG00000013200	SETD1B	52	49.848	Chinchilla_lanigera
ENSAMXG00000020648	setd1ba	82	73.927	ENSELUG00000022712	-	71	69.208	Esox_lucius
ENSAMXG00000020648	setd1ba	50	71.129	ENSFDAG00000015120	SETD1B	75	71.129	Fukomys_damarensis
ENSAMXG00000020648	setd1ba	52	83.962	ENSGMOG00000009831	setd1ba	56	83.962	Gadus_morhua
ENSAMXG00000020648	setd1ba	88	63.344	ENSGAFG00000008712	setd1ba	73	81.481	Gambusia_affinis
ENSAMXG00000020648	setd1ba	77	68.889	ENSGACG00000017002	setd1ba	80	74.096	Gasterosteus_aculeatus
ENSAMXG00000020648	setd1ba	62	81.250	ENSLAFG00000026518	SETD1B	72	81.250	Loxodonta_africana
ENSAMXG00000020648	setd1ba	66	76.857	ENSODEG00000010155	SETD1B	67	76.857	Octodon_degus
ENSAMXG00000020648	setd1ba	65	59.250	ENSORLG00015004156	setd1ba	78	63.222	Oryzias_latipes_hsok
ENSAMXG00000020648	setd1ba	89	63.551	ENSPMGG00000011527	setd1ba	88	63.445	Periophthalmus_magnuspinnatus
ENSAMXG00000020648	setd1ba	54	61.914	ENSPFOG00000019768	setd1ba	53	60.481	Poecilia_formosa
ENSAMXG00000020648	setd1ba	94	82.851	ENSPNAG00000016011	setd1ba	99	81.818	Pygocentrus_nattereri
ENSAMXG00000020648	setd1ba	96	58.309	ENSSFOG00015015331	setd1ba	72	84.259	Scleropages_formosus
ENSAMXG00000020648	setd1ba	66	72.099	ENSSFOG00015004814	SETD1B	75	72.099	Scleropages_formosus