EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000020783 (Gene tree)
Gene ID: 103035322
Gene Symbol: si:dkey-93h22.8
Alias: fc32h05|fi41c08|im:7140483|wu:fc32h05|wu:fi41c08
Full Name: peroxisome proliferator-activated receptor gamma coactivator-related protein 1-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 9412 bases
Position: chr5:27952326-27961737
Accession: 103035322
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000051762	RRM_1	PF00076.22	2.9e-09	1	1
ENSAMXP00000021402	RRM_1	PF00076.22	3e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000021402	-	3628	XM_007246107	ENSAMXP00000021402	1060 (aa)	XP_007246169	W5LNJ0
ENSAMXT00000041505	-	4138	-	ENSAMXP00000051762	1037 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000020783's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000020783's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000020783	si:dkey-93h22.8	51	69.388	ENSAPOG00000001094	si:dkey-93h22.8	77	69.697	Acanthochromis_polyacanthus
ENSAMXG00000020783	si:dkey-93h22.8	51	69.697	ENSAOCG00000008140	si:dkey-93h22.8	81	61.667	Amphiprion_ocellaris
ENSAMXG00000020783	si:dkey-93h22.8	60	61.184	ENSACLG00000019359	-	53	61.184	Astatotilapia_calliptera
ENSAMXG00000020783	si:dkey-93h22.8	100	40.307	ENSDARG00000098666	si:dkey-93h22.8	72	34.436	Danio_rerio
ENSAMXG00000020783	si:dkey-93h22.8	60	60.526	ENSHBUG00000019347	-	53	60.526	Haplochromis_burtoni
ENSAMXG00000020783	si:dkey-93h22.8	54	58.170	ENSMAMG00000011169	-	67	60.331	Mastacembelus_armatus
ENSAMXG00000020783	si:dkey-93h22.8	60	61.184	ENSMZEG00005008228	-	55	61.184	Maylandia_zebra
ENSAMXG00000020783	si:dkey-93h22.8	78	61.789	ENSOMEG00000012140	si:dkey-93h22.8	82	59.740	Oryzias_melastigma
ENSAMXG00000020783	si:dkey-93h22.8	60	61.184	ENSPNYG00000002682	-	55	61.184	Pundamilia_nyererei
ENSAMXG00000020783	si:dkey-93h22.8	78	64.303	ENSPNAG00000023094	si:dkey-93h22.8	71	64.640	Pygocentrus_nattereri
ENSAMXG00000020783	si:dkey-93h22.8	50	68.687	ENSSMAG00000005915	si:dkey-93h22.8	68	62.500	Scophthalmus_maximus
ENSAMXG00000020783	si:dkey-93h22.8	51	67.961	ENSSDUG00000001268	si:dkey-93h22.8	52	65.909	Seriola_dumerili
ENSAMXG00000020783	si:dkey-93h22.8	51	67.961	ENSSLDG00000012010	si:dkey-93h22.8	52	65.909	Seriola_lalandi_dorsalis
ENSAMXG00000020783	si:dkey-93h22.8	50	61.667	ENSSPAG00000010602	si:dkey-93h22.8	81	59.477	Stegastes_partitus
ENSAMXG00000020783	si:dkey-93h22.8	66	71.569	ENSTRUG00000011524	pprc1	62	71.569	Takifugu_rubripes
ENSAMXG00000020783	si:dkey-93h22.8	51	67.677	ENSXMAG00000000243	si:dkey-93h22.8	57	60.000	Xiphophorus_maculatus