EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000020809 (Gene tree)
Gene ID: 103037658
Gene Symbol: smg7
Alias: fa99h10|wu:fa99h10
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 34771 bases
Position: chr16:6438812-6473582
Accession: 103037658
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000048992	EST1	PF10374.9	7.9e-26	1	1
ENSAMXP00000040133	EST1	PF10374.9	8.4e-26	1	1
ENSAMXP00000021428	EST1	PF10374.9	3.8e-14	1	1
ENSAMXP00000048992	EST1_DNA_bind	PF10373.9	5.6e-50	1	1
ENSAMXP00000021428	EST1_DNA_bind	PF10373.9	5.8e-50	1	1
ENSAMXP00000040133	EST1_DNA_bind	PF10373.9	6e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000032225	-	7780	XM_007258029	ENSAMXP00000040133	1177 (aa)	XP_007258091	UPI000BBDBD02
ENSAMXT00000021428	-	3480	-	ENSAMXP00000021428	1159 (aa)	-	W5LNL6
ENSAMXT00000049013	-	7630	XM_007258031	ENSAMXP00000048992	1127 (aa)	XP_007258093	UPI000BBD62C1

Gene Model

Click here to download ENSAMXG00000020809's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000020809's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000020809	smg7	99	68.028	ENSG00000116698	SMG7	86	93.711	Homo_sapiens
ENSAMXG00000020809	smg7	93	84.821	ENSAPOG00000009611	smg7	95	85.564	Acanthochromis_polyacanthus
ENSAMXG00000020809	smg7	99	68.407	ENSAMEG00000002357	SMG7	100	67.498	Ailuropoda_melanoleuca
ENSAMXG00000020809	smg7	97	74.031	ENSACIG00000015152	smg7	100	74.842	Amphilophus_citrinellus
ENSAMXG00000020809	smg7	100	77.537	ENSAOCG00000013538	smg7	100	78.453	Amphiprion_ocellaris
ENSAMXG00000020809	smg7	100	77.307	ENSAPEG00000007851	smg7	100	78.221	Amphiprion_percula
ENSAMXG00000020809	smg7	100	76.577	ENSATEG00000006931	smg7	100	76.293	Anabas_testudineus
ENSAMXG00000020809	smg7	99	67.586	ENSAPLG00000015811	SMG7	99	68.963	Anas_platyrhynchos
ENSAMXG00000020809	smg7	99	67.745	ENSACAG00000014989	SMG7	99	67.688	Anolis_carolinensis
ENSAMXG00000020809	smg7	99	67.943	ENSANAG00000028114	SMG7	84	94.194	Aotus_nancymaae
ENSAMXG00000020809	smg7	100	76.783	ENSACLG00000022079	smg7	100	76.795	Astatotilapia_calliptera
ENSAMXG00000020809	smg7	99	67.565	ENSBTAG00000008003	SMG7	99	67.739	Bos_taurus
ENSAMXG00000020809	smg7	99	67.854	ENSCJAG00000005135	SMG7	87	91.875	Callithrix_jacchus
ENSAMXG00000020809	smg7	99	67.309	ENSCAFG00000013276	SMG7	97	66.946	Canis_familiaris
ENSAMXG00000020809	smg7	99	67.993	ENSCAFG00020015475	SMG7	89	90.854	Canis_lupus_dingo
ENSAMXG00000020809	smg7	100	66.472	ENSCHIG00000018192	SMG7	99	66.639	Capra_hircus
ENSAMXG00000020809	smg7	99	68.142	ENSTSYG00000002667	SMG7	80	94.194	Carlito_syrichta
ENSAMXG00000020809	smg7	99	67.477	ENSCPOG00000008906	SMG7	99	66.359	Cavia_porcellus
ENSAMXG00000020809	smg7	99	68.202	ENSCCAG00000028596	SMG7	84	94.194	Cebus_capucinus
ENSAMXG00000020809	smg7	99	68.202	ENSCATG00000011063	SMG7	84	94.194	Cercocebus_atys
ENSAMXG00000020809	smg7	99	67.678	ENSCLAG00000010751	SMG7	99	67.389	Chinchilla_lanigera
ENSAMXG00000020809	smg7	99	67.393	ENSCSAG00000012654	SMG7	97	67.114	Chlorocebus_sabaeus
ENSAMXG00000020809	smg7	92	60.109	ENSCHOG00000010522	SMG7	89	63.711	Choloepus_hoffmanni
ENSAMXG00000020809	smg7	99	69.410	ENSCPBG00000015724	SMG7	99	69.468	Chrysemys_picta_bellii
ENSAMXG00000020809	smg7	99	68.178	ENSCANG00000015680	SMG7	84	94.194	Colobus_angolensis_palliatus
ENSAMXG00000020809	smg7	99	66.349	ENSCGRG00001013705	Smg7	99	66.898	Cricetulus_griseus_chok1gshd
ENSAMXG00000020809	smg7	99	66.290	ENSCGRG00000018401	Smg7	100	66.841	Cricetulus_griseus_crigri
ENSAMXG00000020809	smg7	99	73.764	ENSCVAG00000011842	smg7	100	79.695	Cyprinodon_variegatus
ENSAMXG00000020809	smg7	100	86.003	ENSDARG00000060767	smg7	100	85.835	Danio_rerio
ENSAMXG00000020809	smg7	99	66.695	ENSDORG00000007331	Smg7	99	66.415	Dipodomys_ordii
ENSAMXG00000020809	smg7	97	66.091	ENSETEG00000002654	SMG7	99	65.889	Echinops_telfairi
ENSAMXG00000020809	smg7	99	67.224	ENSEASG00005006524	SMG7	99	66.946	Equus_asinus_asinus
ENSAMXG00000020809	smg7	99	67.308	ENSECAG00000004313	SMG7	97	80.928	Equus_caballus
ENSAMXG00000020809	smg7	97	65.603	ENSEEUG00000002024	SMG7	94	65.315	Erinaceus_europaeus
ENSAMXG00000020809	smg7	100	81.083	ENSELUG00000010293	smg7	100	80.050	Esox_lucius
ENSAMXG00000020809	smg7	99	67.308	ENSFCAG00000010900	SMG7	99	68.202	Felis_catus
ENSAMXG00000020809	smg7	99	66.779	ENSFALG00000003047	SMG7	61	76.335	Ficedula_albicollis
ENSAMXG00000020809	smg7	99	66.639	ENSFDAG00000012121	SMG7	99	66.130	Fukomys_damarensis
ENSAMXG00000020809	smg7	100	73.247	ENSFHEG00000011073	smg7	100	73.287	Fundulus_heteroclitus
ENSAMXG00000020809	smg7	89	79.473	ENSGMOG00000004916	smg7	91	79.473	Gadus_morhua
ENSAMXG00000020809	smg7	99	67.554	ENSGALG00000004667	SMG7	99	68.951	Gallus_gallus
ENSAMXG00000020809	smg7	100	74.129	ENSGAFG00000019000	smg7	100	73.583	Gambusia_affinis
ENSAMXG00000020809	smg7	98	72.038	ENSGACG00000001634	smg7	99	72.816	Gasterosteus_aculeatus
ENSAMXG00000020809	smg7	99	67.941	ENSGGOG00000002342	SMG7	82	92.500	Gorilla_gorilla
ENSAMXG00000020809	smg7	100	76.783	ENSHBUG00000003726	smg7	100	76.878	Haplochromis_burtoni
ENSAMXG00000020809	smg7	99	67.854	ENSHGLG00000009353	SMG7	99	67.565	Heterocephalus_glaber_female
ENSAMXG00000020809	smg7	99	67.767	ENSHGLG00100009637	-	99	67.478	Heterocephalus_glaber_male
ENSAMXG00000020809	smg7	99	60.702	ENSHGLG00100004878	-	99	60.418	Heterocephalus_glaber_male
ENSAMXG00000020809	smg7	100	88.126	ENSIPUG00000016997	smg7	100	88.126	Ictalurus_punctatus
ENSAMXG00000020809	smg7	99	66.973	ENSSTOG00000000401	SMG7	99	67.113	Ictidomys_tridecemlineatus
ENSAMXG00000020809	smg7	99	66.360	ENSJJAG00000012351	Smg7	99	66.583	Jaculus_jaculus
ENSAMXG00000020809	smg7	97	70.599	ENSKMAG00000004900	smg7	100	70.599	Kryptolebias_marmoratus
ENSAMXG00000020809	smg7	52	71.477	ENSLBEG00000005220	-	75	71.477	Labrus_bergylta
ENSAMXG00000020809	smg7	99	76.149	ENSLBEG00000002983	smg7	99	75.610	Labrus_bergylta
ENSAMXG00000020809	smg7	99	71.500	ENSLACG00000000972	SMG7	99	71.251	Latimeria_chalumnae
ENSAMXG00000020809	smg7	99	74.336	ENSLOCG00000002010	smg7	99	73.960	Lepisosteus_oculatus
ENSAMXG00000020809	smg7	99	67.114	ENSLAFG00000008186	SMG7	99	66.835	Loxodonta_africana
ENSAMXG00000020809	smg7	99	67.475	ENSMFAG00000031653	SMG7	84	94.194	Macaca_fascicularis
ENSAMXG00000020809	smg7	99	67.446	ENSMMUG00000018458	SMG7	99	67.168	Macaca_mulatta
ENSAMXG00000020809	smg7	99	68.202	ENSMNEG00000034798	SMG7	84	94.194	Macaca_nemestrina
ENSAMXG00000020809	smg7	99	68.202	ENSMLEG00000037170	SMG7	100	67.240	Mandrillus_leucophaeus
ENSAMXG00000020809	smg7	88	75.823	ENSMAMG00000018733	smg7	86	75.564	Mastacembelus_armatus
ENSAMXG00000020809	smg7	100	77.148	ENSMZEG00005015247	smg7	100	76.711	Maylandia_zebra
ENSAMXG00000020809	smg7	97	66.960	ENSMGAG00000001561	SMG7	99	68.472	Meleagris_gallopavo
ENSAMXG00000020809	smg7	99	67.013	ENSMAUG00000019484	Smg7	99	66.724	Mesocricetus_auratus
ENSAMXG00000020809	smg7	99	68.462	ENSMICG00000007145	SMG7	81	94.194	Microcebus_murinus
ENSAMXG00000020809	smg7	99	66.493	ENSMOCG00000020748	Smg7	99	66.203	Microtus_ochrogaster
ENSAMXG00000020809	smg7	94	80.100	ENSMMOG00000001524	smg7	98	80.597	Mola_mola
ENSAMXG00000020809	smg7	92	67.989	ENSMODG00000007139	SMG7	99	68.053	Monodelphis_domestica
ENSAMXG00000020809	smg7	95	81.818	ENSMALG00000000061	smg7	93	81.818	Monopterus_albus
ENSAMXG00000020809	smg7	99	67.130	MGP_CAROLIEiJ_G0014704	Smg7	99	66.783	Mus_caroli
ENSAMXG00000020809	smg7	99	66.985	ENSMUSG00000042772	Smg7	99	66.696	Mus_musculus
ENSAMXG00000020809	smg7	99	67.159	MGP_PahariEiJ_G0027940	Smg7	99	66.870	Mus_pahari
ENSAMXG00000020809	smg7	99	67.072	MGP_SPRETEiJ_G0015511	Smg7	99	66.783	Mus_spretus
ENSAMXG00000020809	smg7	98	67.259	ENSMPUG00000011732	SMG7	97	66.977	Mustela_putorius_furo
ENSAMXG00000020809	smg7	99	66.611	ENSMLUG00000015417	SMG7	99	66.332	Myotis_lucifugus
ENSAMXG00000020809	smg7	100	67.647	ENSNGAG00000009836	Smg7	100	67.273	Nannospalax_galili
ENSAMXG00000020809	smg7	98	70.416	ENSNBRG00000024343	smg7	99	70.410	Neolamprologus_brichardi
ENSAMXG00000020809	smg7	99	68.202	ENSNLEG00000018018	SMG7	100	67.240	Nomascus_leucogenys
ENSAMXG00000020809	smg7	64	95.789	ENSMEUG00000004681	SMG7	66	95.789	Notamacropus_eugenii
ENSAMXG00000020809	smg7	96	62.042	ENSOPRG00000013942	SMG7	96	62.009	Ochotona_princeps
ENSAMXG00000020809	smg7	99	68.115	ENSODEG00000010390	SMG7	99	67.739	Octodon_degus
ENSAMXG00000020809	smg7	100	76.425	ENSONIG00000000277	smg7	100	76.435	Oreochromis_niloticus
ENSAMXG00000020809	smg7	99	66.835	ENSOANG00000000994	SMG7	100	67.230	Ornithorhynchus_anatinus
ENSAMXG00000020809	smg7	99	64.543	ENSOCUG00000005887	SMG7	92	64.178	Oryctolagus_cuniculus
ENSAMXG00000020809	smg7	100	74.916	ENSORLG00000007314	smg7	100	74.348	Oryzias_latipes
ENSAMXG00000020809	smg7	100	75.000	ENSORLG00020015779	smg7	100	74.432	Oryzias_latipes_hni
ENSAMXG00000020809	smg7	100	74.643	ENSORLG00015012289	smg7	100	74.180	Oryzias_latipes_hsok
ENSAMXG00000020809	smg7	100	74.559	ENSOMEG00000002328	smg7	100	74.601	Oryzias_melastigma
ENSAMXG00000020809	smg7	97	66.494	ENSOGAG00000003107	SMG7	93	66.321	Otolemur_garnettii
ENSAMXG00000020809	smg7	99	66.695	ENSOARG00000001352	SMG7	100	66.696	Ovis_aries
ENSAMXG00000020809	smg7	99	68.202	ENSPPAG00000031619	SMG7	89	91.411	Pan_paniscus
ENSAMXG00000020809	smg7	99	68.288	ENSPPRG00000011222	SMG7	99	68.000	Panthera_pardus
ENSAMXG00000020809	smg7	97	67.526	ENSPTIG00000007242	SMG7	100	67.240	Panthera_tigris_altaica
ENSAMXG00000020809	smg7	99	68.202	ENSPTRG00000001764	SMG7	84	94.194	Pan_troglodytes
ENSAMXG00000020809	smg7	99	68.202	ENSPANG00000004520	SMG7	99	67.913	Papio_anubis
ENSAMXG00000020809	smg7	100	75.548	ENSPKIG00000007242	smg7	100	75.632	Paramormyrops_kingsleyae
ENSAMXG00000020809	smg7	99	67.731	ENSPSIG00000012201	SMG7	100	68.398	Pelodiscus_sinensis
ENSAMXG00000020809	smg7	71	46.523	ENSPMGG00000021833	smg7	93	53.846	Periophthalmus_magnuspinnatus
ENSAMXG00000020809	smg7	99	65.674	ENSPEMG00000011315	Smg7	99	65.819	Peromyscus_maniculatus_bairdii
ENSAMXG00000020809	smg7	99	67.943	ENSPCIG00000003786	SMG7	89	93.125	Phascolarctos_cinereus
ENSAMXG00000020809	smg7	100	73.978	ENSPFOG00000019219	smg7	100	73.895	Poecilia_formosa
ENSAMXG00000020809	smg7	100	74.129	ENSPLAG00000001446	smg7	100	74.042	Poecilia_latipinna
ENSAMXG00000020809	smg7	97	73.447	ENSPMEG00000005218	smg7	99	73.357	Poecilia_mexicana
ENSAMXG00000020809	smg7	88	72.201	ENSPREG00000019039	smg7	92	71.863	Poecilia_reticulata
ENSAMXG00000020809	smg7	99	68.202	ENSPPYG00000000427	SMG7	99	67.913	Pongo_abelii
ENSAMXG00000020809	smg7	89	74.945	ENSPCAG00000008360	SMG7	88	74.945	Procavia_capensis
ENSAMXG00000020809	smg7	99	67.477	ENSPCOG00000011996	SMG7	76	94.194	Propithecus_coquereli
ENSAMXG00000020809	smg7	91	62.774	ENSPVAG00000000851	SMG7	89	62.466	Pteropus_vampyrus
ENSAMXG00000020809	smg7	100	77.076	ENSPNYG00000007643	smg7	100	77.090	Pundamilia_nyererei
ENSAMXG00000020809	smg7	100	94.167	ENSPNAG00000011374	smg7	99	95.455	Pygocentrus_nattereri
ENSAMXG00000020809	smg7	99	67.448	ENSRNOG00000027962	Smg7	100	68.657	Rattus_norvegicus
ENSAMXG00000020809	smg7	99	68.202	ENSRBIG00000036316	SMG7	100	67.240	Rhinopithecus_bieti
ENSAMXG00000020809	smg7	99	68.202	ENSRROG00000035719	SMG7	100	67.240	Rhinopithecus_roxellana
ENSAMXG00000020809	smg7	99	67.140	ENSSBOG00000023454	SMG7	86	93.711	Saimiri_boliviensis_boliviensis
ENSAMXG00000020809	smg7	99	67.857	ENSSHAG00000013147	SMG7	99	67.798	Sarcophilus_harrisii
ENSAMXG00000020809	smg7	100	79.191	ENSSFOG00015017252	smg7	100	83.500	Scleropages_formosus
ENSAMXG00000020809	smg7	100	75.983	ENSSMAG00000006067	smg7	100	76.421	Scophthalmus_maximus
ENSAMXG00000020809	smg7	96	84.966	ENSSDUG00000017543	smg7	100	76.309	Seriola_dumerili
ENSAMXG00000020809	smg7	99	68.641	ENSSPUG00000002064	SMG7	99	68.439	Sphenodon_punctatus
ENSAMXG00000020809	smg7	99	76.728	ENSSPAG00000008733	smg7	99	76.769	Stegastes_partitus
ENSAMXG00000020809	smg7	99	67.475	ENSSSCG00000015558	SMG7	99	67.197	Sus_scrofa
ENSAMXG00000020809	smg7	99	67.645	ENSTGUG00000003928	SMG7	100	68.875	Taeniopygia_guttata
ENSAMXG00000020809	smg7	100	69.073	ENSTNIG00000002802	smg7	100	68.317	Tetraodon_nigroviridis
ENSAMXG00000020809	smg7	78	68.571	ENSTBEG00000003220	SMG7	75	68.571	Tupaia_belangeri
ENSAMXG00000020809	smg7	96	66.061	ENSTTRG00000014778	SMG7	94	65.771	Tursiops_truncatus
ENSAMXG00000020809	smg7	96	66.817	ENSUAMG00000017473	SMG7	100	66.516	Ursus_americanus
ENSAMXG00000020809	smg7	97	66.868	ENSUMAG00000016389	SMG7	100	66.580	Ursus_maritimus
ENSAMXG00000020809	smg7	99	67.391	ENSVVUG00000008976	SMG7	99	68.657	Vulpes_vulpes
ENSAMXG00000020809	smg7	99	61.565	ENSXETG00000012528	smg7	99	60.585	Xenopus_tropicalis
ENSAMXG00000020809	smg7	100	74.064	ENSXMAG00000007123	smg7	100	73.845	Xiphophorus_maculatus