EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000021016 (Gene tree)
Gene ID: 103029459
Gene Symbol: shrprbck1r
Alias: sipl1-rbck1|zgc:175152
Full Name: ranBP-type and C3HC4-type zinc finger-containing protein 1-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 35430 bases
Position: chrAPWO02001709.1:31191-66620
Accession: 103029459
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000055109	zf-RanBP	PF00641.18	3.6e-07	1	1
ENSAMXP00000021641	zf-RanBP	PF00641.18	3.8e-07	1	1
ENSAMXP00000043468	zf-RanBP	PF00641.18	4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000043616	-	4278	XM_022663331	ENSAMXP00000043468	725 (aa)	XP_022519052	UPI000BBDB2D2
ENSAMXT00000050828	-	5847	-	ENSAMXP00000055109	667 (aa)	-	-
ENSAMXT00000021641	-	2718	-	ENSAMXP00000021641	694 (aa)	-	W5LP76

Gene Model

Click here to download ENSAMXG00000021016's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex04217	Necroptosis	KEGG
amex04621	NOD-like receptor signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000021016's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000021016	shrprbck1r	61	54.258	ENSAMXG00000006229	sharpin	97	54.774
ENSAMXG00000021016	shrprbck1r	76	43.548	ENSAMXG00000004941	rbck1	89	60.317

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000021016	shrprbck1r	100	70.822	ENSAPOG00000022737	shrprbck1r	100	70.725	Acanthochromis_polyacanthus
ENSAMXG00000021016	shrprbck1r	66	59.594	ENSAPOG00000023352	sharpin	95	59.368	Acanthochromis_polyacanthus
ENSAMXG00000021016	shrprbck1r	100	70.572	ENSACIG00000002184	shrprbck1r	100	69.837	Amphilophus_citrinellus
ENSAMXG00000021016	shrprbck1r	66	59.276	ENSAOCG00000017464	sharpin	95	58.916	Amphiprion_ocellaris
ENSAMXG00000021016	shrprbck1r	100	71.370	ENSAOCG00000002890	shrprbck1r	100	71.272	Amphiprion_ocellaris
ENSAMXG00000021016	shrprbck1r	100	70.274	ENSAPEG00000023274	shrprbck1r	100	70.178	Amphiprion_percula
ENSAMXG00000021016	shrprbck1r	66	59.276	ENSAPEG00000004049	sharpin	95	58.916	Amphiprion_percula
ENSAMXG00000021016	shrprbck1r	100	68.999	ENSATEG00000014561	shrprbck1r	100	69.041	Anabas_testudineus
ENSAMXG00000021016	shrprbck1r	66	60.090	ENSATEG00000007832	sharpin	87	59.865	Anabas_testudineus
ENSAMXG00000021016	shrprbck1r	100	70.685	ENSACLG00000022609	shrprbck1r	100	70.204	Astatotilapia_calliptera
ENSAMXG00000021016	shrprbck1r	100	66.758	ENSCSEG00000011306	shrprbck1r	100	66.303	Cynoglossus_semilaevis
ENSAMXG00000021016	shrprbck1r	100	69.505	ENSCVAG00000007250	shrprbck1r	100	69.126	Cyprinodon_variegatus
ENSAMXG00000021016	shrprbck1r	66	57.047	ENSCVAG00000006586	sharpin	95	56.823	Cyprinodon_variegatus
ENSAMXG00000021016	shrprbck1r	100	78.512	ENSDARG00000059871	shrprbck1r	100	78.512	Danio_rerio
ENSAMXG00000021016	shrprbck1r	62	56.145	ENSDARG00000076995	sharpin	95	54.831	Danio_rerio
ENSAMXG00000021016	shrprbck1r	100	72.940	ENSELUG00000016022	shrprbck1r	88	84.858	Esox_lucius
ENSAMXG00000021016	shrprbck1r	66	57.823	ENSFHEG00000013564	sharpin	94	57.370	Fundulus_heteroclitus
ENSAMXG00000021016	shrprbck1r	53	64.798	ENSGMOG00000010123	sharpin	89	64.798	Gadus_morhua
ENSAMXG00000021016	shrprbck1r	66	44.875	ENSGAFG00000021405	sharpin	95	46.778	Gambusia_affinis
ENSAMXG00000021016	shrprbck1r	100	68.082	ENSGAFG00000009309	shrprbck1r	100	67.847	Gambusia_affinis
ENSAMXG00000021016	shrprbck1r	77	68.036	ENSGACG00000002544	shrprbck1r	99	68.841	Gasterosteus_aculeatus
ENSAMXG00000021016	shrprbck1r	100	70.959	ENSHBUG00000021933	shrprbck1r	100	70.556	Haplochromis_burtoni
ENSAMXG00000021016	shrprbck1r	66	54.773	ENSHCOG00000018847	sharpin	80	55.000	Hippocampus_comes
ENSAMXG00000021016	shrprbck1r	53	76.923	ENSIPUG00000011951	sharpin	97	76.923	Ictalurus_punctatus
ENSAMXG00000021016	shrprbck1r	97	81.020	ENSIPUG00000014247	shrprbck1r	99	79.586	Ictalurus_punctatus
ENSAMXG00000021016	shrprbck1r	100	66.801	ENSKMAG00000015215	shrprbck1r	100	66.711	Kryptolebias_marmoratus
ENSAMXG00000021016	shrprbck1r	66	58.087	ENSKMAG00000015204	sharpin	76	59.048	Kryptolebias_marmoratus
ENSAMXG00000021016	shrprbck1r	100	70.451	ENSLBEG00000016876	shrprbck1r	100	69.837	Labrus_bergylta
ENSAMXG00000021016	shrprbck1r	66	59.955	ENSLBEG00000016624	sharpin	95	59.732	Labrus_bergylta
ENSAMXG00000021016	shrprbck1r	96	53.429	ENSLACG00000010948	-	98	52.282	Latimeria_chalumnae
ENSAMXG00000021016	shrprbck1r	100	70.082	ENSLOCG00000008910	shrprbck1r	100	70.123	Lepisosteus_oculatus
ENSAMXG00000021016	shrprbck1r	53	64.516	ENSMAMG00000014645	sharpin	94	64.516	Mastacembelus_armatus
ENSAMXG00000021016	shrprbck1r	100	68.622	ENSMAMG00000022930	shrprbck1r	100	68.665	Mastacembelus_armatus
ENSAMXG00000021016	shrprbck1r	100	70.548	ENSMZEG00005021257	shrprbck1r	100	70.068	Maylandia_zebra
ENSAMXG00000021016	shrprbck1r	100	68.895	ENSMMOG00000003764	shrprbck1r	100	68.810	Mola_mola
ENSAMXG00000021016	shrprbck1r	96	71.633	ENSMALG00000008861	shrprbck1r	95	71.388	Monopterus_albus
ENSAMXG00000021016	shrprbck1r	100	70.685	ENSNBRG00000002270	shrprbck1r	100	70.204	Neolamprologus_brichardi
ENSAMXG00000021016	shrprbck1r	62	52.644	ENSONIG00000009626	-	99	52.414	Oreochromis_niloticus
ENSAMXG00000021016	shrprbck1r	100	70.862	ENSONIG00000014401	shrprbck1r	100	70.380	Oreochromis_niloticus
ENSAMXG00000021016	shrprbck1r	100	68.450	ENSORLG00000007392	shrprbck1r	100	67.804	Oryzias_latipes
ENSAMXG00000021016	shrprbck1r	66	57.111	ENSORLG00000017281	sharpin	95	57.556	Oryzias_latipes
ENSAMXG00000021016	shrprbck1r	100	68.313	ENSORLG00020018619	shrprbck1r	100	67.667	Oryzias_latipes_hni
ENSAMXG00000021016	shrprbck1r	66	56.951	ENSORLG00020000801	sharpin	95	57.399	Oryzias_latipes_hni
ENSAMXG00000021016	shrprbck1r	100	67.945	ENSORLG00015018865	shrprbck1r	100	67.852	Oryzias_latipes_hsok
ENSAMXG00000021016	shrprbck1r	66	56.951	ENSORLG00015009860	sharpin	95	57.399	Oryzias_latipes_hsok
ENSAMXG00000021016	shrprbck1r	100	69.589	ENSOMEG00000012749	shrprbck1r	100	69.074	Oryzias_melastigma
ENSAMXG00000021016	shrprbck1r	56	52.695	ENSOMEG00000005729	sharpin	89	56.634	Oryzias_melastigma
ENSAMXG00000021016	shrprbck1r	100	74.759	ENSPKIG00000006933	shrprbck1r	100	74.759	Paramormyrops_kingsleyae
ENSAMXG00000021016	shrprbck1r	71	60.797	ENSPKIG00000018308	-	95	60.669	Paramormyrops_kingsleyae
ENSAMXG00000021016	shrprbck1r	100	67.030	ENSPMGG00000013254	shrprbck1r	100	66.757	Periophthalmus_magnuspinnatus
ENSAMXG00000021016	shrprbck1r	100	68.493	ENSPFOG00000004214	shrprbck1r	100	68.256	Poecilia_formosa
ENSAMXG00000021016	shrprbck1r	66	56.364	ENSPFOG00000015253	sharpin	95	55.909	Poecilia_formosa
ENSAMXG00000021016	shrprbck1r	100	68.219	ENSPLAG00000020523	shrprbck1r	100	67.984	Poecilia_latipinna
ENSAMXG00000021016	shrprbck1r	66	56.591	ENSPLAG00000000423	sharpin	95	56.136	Poecilia_latipinna
ENSAMXG00000021016	shrprbck1r	51	68.235	ENSPMEG00000023030	sharpin	76	68.750	Poecilia_mexicana
ENSAMXG00000021016	shrprbck1r	100	68.587	ENSPMEG00000006877	shrprbck1r	100	68.349	Poecilia_mexicana
ENSAMXG00000021016	shrprbck1r	66	56.591	ENSPREG00000009702	sharpin	95	56.136	Poecilia_reticulata
ENSAMXG00000021016	shrprbck1r	100	68.313	ENSPREG00000014689	shrprbck1r	100	67.989	Poecilia_reticulata
ENSAMXG00000021016	shrprbck1r	100	70.959	ENSPNYG00000022601	shrprbck1r	100	70.476	Pundamilia_nyererei
ENSAMXG00000021016	shrprbck1r	100	88.571	ENSPNAG00000007847	shrprbck1r	100	89.388	Pygocentrus_nattereri
ENSAMXG00000021016	shrprbck1r	61	50.367	ENSPNAG00000002911	sharpin	99	54.308	Pygocentrus_nattereri
ENSAMXG00000021016	shrprbck1r	61	63.448	ENSSFOG00015004028	sharpin	99	52.335	Scleropages_formosus
ENSAMXG00000021016	shrprbck1r	78	60.854	ENSSFOG00015014150	-	93	86.667	Scleropages_formosus
ENSAMXG00000021016	shrprbck1r	100	68.548	ENSSMAG00000018085	shrprbck1r	100	68.817	Scophthalmus_maximus
ENSAMXG00000021016	shrprbck1r	100	70.572	ENSSDUG00000002959	shrprbck1r	100	70.708	Seriola_dumerili
ENSAMXG00000021016	shrprbck1r	66	46.756	ENSSDUG00000019039	sharpin	96	47.857	Seriola_dumerili
ENSAMXG00000021016	shrprbck1r	100	70.652	ENSSLDG00000009026	shrprbck1r	100	70.845	Seriola_lalandi_dorsalis
ENSAMXG00000021016	shrprbck1r	96	70.972	ENSSPAG00000016097	shrprbck1r	99	70.996	Stegastes_partitus
ENSAMXG00000021016	shrprbck1r	100	66.621	ENSTRUG00000006949	shrprbck1r	100	67.397	Takifugu_rubripes
ENSAMXG00000021016	shrprbck1r	66	53.258	ENSTRUG00000011046	sharpin	96	53.725	Takifugu_rubripes
ENSAMXG00000021016	shrprbck1r	61	55.000	ENSTNIG00000008521	sharpin	95	54.762	Tetraodon_nigroviridis
ENSAMXG00000021016	shrprbck1r	100	67.260	ENSXCOG00000006701	shrprbck1r	100	67.030	Xiphophorus_couchianus
ENSAMXG00000021016	shrprbck1r	55	56.250	ENSXCOG00000015019	sharpin	96	56.250	Xiphophorus_couchianus
ENSAMXG00000021016	shrprbck1r	66	57.273	ENSXMAG00000022076	sharpin	95	56.818	Xiphophorus_maculatus
ENSAMXG00000021016	shrprbck1r	100	67.123	ENSXMAG00000018972	shrprbck1r	100	66.894	Xiphophorus_maculatus