EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000021023 (Gene tree)
Gene ID: 103023017
Gene Symbol: smarca4a
Alias: brahma-related gene 1|brg1|smarca2|smarca4|wu:fb51a08|yng|young
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 4
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 19034 bases
Position: chr2:11818816-11837849
Accession: 103023017
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000021667	ResIII	PF04851.15	1.1e-08	1	1
ENSAMXP00000021667	BRK	PF07533.16	6.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000021667	-	4569	XM_022673688	ENSAMXP00000021667	1522 (aa)	XP_022529409	W5LP99

Gene Model

Click here to download ENSAMXG00000021023's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000021023's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000021023	smarca4a	95	83.898	ENSAMXG00000011238	-	99	85.867
ENSAMXG00000021023	smarca4a	99	73.320	ENSAMXG00000012404	smarca2	95	72.865

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000021023	smarca4a	98	87.500	ENSG00000127616	SMARCA4	98	89.103	Homo_sapiens
ENSAMXG00000021023	smarca4a	79	88.322	ENSAPOG00000003509	smarca4a	96	88.082	Acanthochromis_polyacanthus
ENSAMXG00000021023	smarca4a	90	86.155	ENSAPOG00000004542	SMARCA4	99	86.910	Acanthochromis_polyacanthus
ENSAMXG00000021023	smarca4a	98	87.500	ENSAMEG00000010868	SMARCA4	98	78.928	Ailuropoda_melanoleuca
ENSAMXG00000021023	smarca4a	98	87.058	ENSACIG00000021550	smarca4a	97	86.822	Amphilophus_citrinellus
ENSAMXG00000021023	smarca4a	96	86.842	ENSACIG00000003035	-	97	87.256	Amphilophus_citrinellus
ENSAMXG00000021023	smarca4a	95	83.960	ENSAOCG00000009450	-	97	82.171	Amphiprion_ocellaris
ENSAMXG00000021023	smarca4a	90	88.009	ENSAOCG00000019167	smarca4a	100	88.722	Amphiprion_ocellaris
ENSAMXG00000021023	smarca4a	99	85.084	ENSAPEG00000023108	-	97	86.117	Amphiprion_percula
ENSAMXG00000021023	smarca4a	90	88.080	ENSAPEG00000015559	smarca4a	100	88.794	Amphiprion_percula
ENSAMXG00000021023	smarca4a	99	84.395	ENSATEG00000001094	-	98	84.544	Anabas_testudineus
ENSAMXG00000021023	smarca4a	98	86.578	ENSATEG00000011524	smarca4a	98	86.164	Anabas_testudineus
ENSAMXG00000021023	smarca4a	98	87.054	ENSANAG00000036991	SMARCA4	98	79.016	Aotus_nancymaae
ENSAMXG00000021023	smarca4a	96	86.680	ENSACLG00000008638	-	98	86.892	Astatotilapia_calliptera
ENSAMXG00000021023	smarca4a	98	87.340	ENSACLG00000000163	smarca4a	97	87.109	Astatotilapia_calliptera
ENSAMXG00000021023	smarca4a	83	89.457	ENSBTAG00000019220	SMARCA4	97	83.354	Bos_taurus
ENSAMXG00000021023	smarca4a	98	87.054	ENSCJAG00000005936	SMARCA4	98	79.002	Callithrix_jacchus
ENSAMXG00000021023	smarca4a	99	84.194	ENSCAFG00020024620	SMARCA4	96	86.243	Canis_lupus_dingo
ENSAMXG00000021023	smarca4a	83	85.016	ENSCHIG00000015318	SMARCA4	97	79.658	Capra_hircus
ENSAMXG00000021023	smarca4a	83	88.605	ENSTSYG00000012966	SMARCA4	97	83.354	Carlito_syrichta
ENSAMXG00000021023	smarca4a	95	83.665	ENSCAPG00000015932	SMARCA4	99	83.174	Cavia_aperea
ENSAMXG00000021023	smarca4a	98	87.500	ENSCATG00000029530	SMARCA4	97	82.826	Cercocebus_atys
ENSAMXG00000021023	smarca4a	99	85.997	ENSCLAG00000011946	SMARCA4	97	86.381	Chinchilla_lanigera
ENSAMXG00000021023	smarca4a	98	87.500	ENSCANG00000036013	SMARCA4	97	82.826	Colobus_angolensis_palliatus
ENSAMXG00000021023	smarca4a	98	88.393	ENSCGRG00000017242	Smarca4	97	83.650	Cricetulus_griseus_crigri
ENSAMXG00000021023	smarca4a	98	85.975	ENSCSEG00000014771	smarca4a	98	83.804	Cynoglossus_semilaevis
ENSAMXG00000021023	smarca4a	99	81.674	ENSCVAG00000003018	-	97	79.835	Cyprinodon_variegatus
ENSAMXG00000021023	smarca4a	98	85.309	ENSCVAG00000006979	smarca4a	98	84.915	Cyprinodon_variegatus
ENSAMXG00000021023	smarca4a	93	81.922	ENSDARG00000104339	SMARCA4	95	82.043	Danio_rerio
ENSAMXG00000021023	smarca4a	99	88.379	ENSDARG00000077226	smarca4a	98	87.626	Danio_rerio
ENSAMXG00000021023	smarca4a	97	82.370	ENSDNOG00000048847	SMARCA4	90	88.949	Dasypus_novemcinctus
ENSAMXG00000021023	smarca4a	70	84.418	ENSDORG00000002544	Smarca4	92	75.417	Dipodomys_ordii
ENSAMXG00000021023	smarca4a	94	87.054	ENSETEG00000013361	SMARCA4	94	74.110	Echinops_telfairi
ENSAMXG00000021023	smarca4a	99	85.631	ENSEASG00005006167	SMARCA4	97	85.090	Equus_asinus_asinus
ENSAMXG00000021023	smarca4a	99	80.000	ENSELUG00000023232	-	97	80.392	Esox_lucius
ENSAMXG00000021023	smarca4a	98	90.026	ENSELUG00000010247	smarca4a	97	89.498	Esox_lucius
ENSAMXG00000021023	smarca4a	98	87.946	ENSFCAG00000004894	SMARCA4	97	82.732	Felis_catus
ENSAMXG00000021023	smarca4a	77	89.187	ENSFALG00000004208	SMARCA4	93	81.477	Ficedula_albicollis
ENSAMXG00000021023	smarca4a	99	83.620	ENSFHEG00000007902	-	97	81.621	Fundulus_heteroclitus
ENSAMXG00000021023	smarca4a	98	84.289	ENSFHEG00000010182	smarca4a	99	84.857	Fundulus_heteroclitus
ENSAMXG00000021023	smarca4a	86	79.391	ENSGMOG00000005756	-	84	78.777	Gadus_morhua
ENSAMXG00000021023	smarca4a	81	85.809	ENSGMOG00000002649	smarca4a	85	86.262	Gadus_morhua
ENSAMXG00000021023	smarca4a	99	83.984	ENSGAFG00000008827	-	97	84.324	Gambusia_affinis
ENSAMXG00000021023	smarca4a	88	87.050	ENSGAFG00000014900	smarca4a	97	86.879	Gambusia_affinis
ENSAMXG00000021023	smarca4a	96	85.071	ENSGACG00000006691	smarca4a	98	83.009	Gasterosteus_aculeatus
ENSAMXG00000021023	smarca4a	99	77.710	ENSGACG00000016033	-	97	78.392	Gasterosteus_aculeatus
ENSAMXG00000021023	smarca4a	98	87.500	ENSGGOG00000009882	SMARCA4	97	82.826	Gorilla_gorilla
ENSAMXG00000021023	smarca4a	98	87.404	ENSHBUG00000021172	smarca4a	98	86.352	Haplochromis_burtoni
ENSAMXG00000021023	smarca4a	96	86.465	ENSHBUG00000005447	-	98	86.676	Haplochromis_burtoni
ENSAMXG00000021023	smarca4a	99	84.293	ENSHGLG00100013774	SMARCA4	97	82.532	Heterocephalus_glaber_male
ENSAMXG00000021023	smarca4a	96	85.724	ENSHCOG00000009510	smarca4a	96	85.917	Hippocampus_comes
ENSAMXG00000021023	smarca4a	96	84.635	ENSIPUG00000016346	-	96	83.974	Ictalurus_punctatus
ENSAMXG00000021023	smarca4a	99	88.626	ENSIPUG00000006107	smarca4a	97	91.184	Ictalurus_punctatus
ENSAMXG00000021023	smarca4a	96	83.736	ENSKMAG00000019518	-	98	82.085	Kryptolebias_marmoratus
ENSAMXG00000021023	smarca4a	98	86.744	ENSKMAG00000011931	smarca4a	97	86.962	Kryptolebias_marmoratus
ENSAMXG00000021023	smarca4a	96	85.329	ENSLBEG00000017383	smarca4a	97	84.711	Labrus_bergylta
ENSAMXG00000021023	smarca4a	99	74.038	ENSLBEG00000020655	-	96	73.537	Labrus_bergylta
ENSAMXG00000021023	smarca4a	50	79.081	ENSLACG00000015309	SMARCA4	100	77.509	Latimeria_chalumnae
ENSAMXG00000021023	smarca4a	99	84.097	ENSLOCG00000007820	smarca4a	98	84.430	Lepisosteus_oculatus
ENSAMXG00000021023	smarca4a	99	85.077	ENSLAFG00000001433	SMARCA4	98	84.247	Loxodonta_africana
ENSAMXG00000021023	smarca4a	98	87.500	ENSMFAG00000032146	SMARCA4	98	81.180	Macaca_fascicularis
ENSAMXG00000021023	smarca4a	98	87.500	ENSMMUG00000012042	SMARCA4	95	91.315	Macaca_mulatta
ENSAMXG00000021023	smarca4a	83	89.070	ENSMNEG00000028512	SMARCA4	97	82.868	Macaca_nemestrina
ENSAMXG00000021023	smarca4a	98	87.500	ENSMLEG00000034976	SMARCA4	97	82.669	Mandrillus_leucophaeus
ENSAMXG00000021023	smarca4a	98	86.428	ENSMAMG00000009256	smarca4a	98	86.667	Mastacembelus_armatus
ENSAMXG00000021023	smarca4a	96	84.010	ENSMAMG00000002841	-	98	82.657	Mastacembelus_armatus
ENSAMXG00000021023	smarca4a	95	83.664	ENSMZEG00005023861	-	98	81.100	Maylandia_zebra
ENSAMXG00000021023	smarca4a	98	87.404	ENSMZEG00005003889	smarca4a	98	86.298	Maylandia_zebra
ENSAMXG00000021023	smarca4a	84	88.406	ENSMAUG00000020731	Smarca4	97	82.859	Mesocricetus_auratus
ENSAMXG00000021023	smarca4a	98	87.500	ENSMICG00000009806	SMARCA4	97	82.543	Microcebus_murinus
ENSAMXG00000021023	smarca4a	83	88.940	ENSMOCG00000022209	Smarca4	97	82.859	Microtus_ochrogaster
ENSAMXG00000021023	smarca4a	99	85.705	ENSMMOG00000008466	-	97	85.790	Mola_mola
ENSAMXG00000021023	smarca4a	96	83.581	ENSMMOG00000007571	smarca4a	98	82.612	Mola_mola
ENSAMXG00000021023	smarca4a	90	85.807	ENSMALG00000021534	-	99	86.547	Monopterus_albus
ENSAMXG00000021023	smarca4a	98	86.216	ENSMALG00000003388	smarca4a	98	83.698	Monopterus_albus
ENSAMXG00000021023	smarca4a	74	85.835	MGP_CAROLIEiJ_G0031879	Smarca4	100	79.954	Mus_caroli
ENSAMXG00000021023	smarca4a	74	85.835	ENSMUSG00000032187	Smarca4	97	82.879	Mus_musculus
ENSAMXG00000021023	smarca4a	83	89.061	MGP_PahariEiJ_G0014745	Smarca4	97	85.933	Mus_pahari
ENSAMXG00000021023	smarca4a	74	85.835	MGP_SPRETEiJ_G0033003	Smarca4	100	79.954	Mus_spretus
ENSAMXG00000021023	smarca4a	84	89.026	ENSNGAG00000021852	Smarca4	97	83.144	Nannospalax_galili
ENSAMXG00000021023	smarca4a	96	88.919	ENSNBRG00000011457	smarca4a	96	89.255	Neolamprologus_brichardi
ENSAMXG00000021023	smarca4a	90	86.227	ENSNBRG00000018865	-	99	86.452	Neolamprologus_brichardi
ENSAMXG00000021023	smarca4a	96	87.500	ENSNLEG00000012389	SMARCA4	94	82.150	Nomascus_leucogenys
ENSAMXG00000021023	smarca4a	82	93.103	ENSOPRG00000000885	-	79	93.103	Ochotona_princeps
ENSAMXG00000021023	smarca4a	99	86.308	ENSODEG00000017127	SMARCA4	97	85.861	Octodon_degus
ENSAMXG00000021023	smarca4a	98	87.348	ENSONIG00000008196	smarca4a	98	87.142	Oreochromis_niloticus
ENSAMXG00000021023	smarca4a	99	82.338	ENSONIG00000018040	-	98	81.392	Oreochromis_niloticus
ENSAMXG00000021023	smarca4a	99	80.064	ENSOCUG00000001787	SMARCA4	98	80.256	Oryctolagus_cuniculus
ENSAMXG00000021023	smarca4a	97	85.510	ENSORLG00000003955	-	98	84.643	Oryzias_latipes
ENSAMXG00000021023	smarca4a	99	85.202	ENSORLG00000015452	smarca4a	98	84.852	Oryzias_latipes
ENSAMXG00000021023	smarca4a	97	85.470	ENSORLG00020009728	-	98	84.654	Oryzias_latipes_hni
ENSAMXG00000021023	smarca4a	95	84.967	ENSORLG00020004611	smarca4a	99	85.368	Oryzias_latipes_hni
ENSAMXG00000021023	smarca4a	99	79.397	ENSORLG00015007739	-	98	81.619	Oryzias_latipes_hsok
ENSAMXG00000021023	smarca4a	95	84.967	ENSORLG00015016560	smarca4a	98	84.915	Oryzias_latipes_hsok
ENSAMXG00000021023	smarca4a	97	85.470	ENSOMEG00000016626	-	97	81.331	Oryzias_melastigma
ENSAMXG00000021023	smarca4a	99	85.518	ENSOMEG00000007486	smarca4a	98	85.642	Oryzias_melastigma
ENSAMXG00000021023	smarca4a	89	87.500	ENSOGAG00000016148	SMARCA4	100	80.331	Otolemur_garnettii
ENSAMXG00000021023	smarca4a	84	88.609	ENSOARG00000017454	SMARCA4	98	83.080	Ovis_aries
ENSAMXG00000021023	smarca4a	98	87.500	ENSPPAG00000043191	SMARCA4	97	82.826	Pan_paniscus
ENSAMXG00000021023	smarca4a	95	88.889	ENSPTIG00000017447	SMARCA4	97	80.878	Panthera_tigris_altaica
ENSAMXG00000021023	smarca4a	98	87.500	ENSPTRG00000010488	SMARCA4	97	82.826	Pan_troglodytes
ENSAMXG00000021023	smarca4a	83	87.310	ENSPANG00000011042	SMARCA4	96	83.249	Papio_anubis
ENSAMXG00000021023	smarca4a	99	88.363	ENSPKIG00000007770	SMARCA4	96	88.231	Paramormyrops_kingsleyae
ENSAMXG00000021023	smarca4a	99	83.980	ENSPKIG00000010087	-	96	84.391	Paramormyrops_kingsleyae
ENSAMXG00000021023	smarca4a	99	81.246	ENSPSIG00000005547	SMARCA4	98	82.491	Pelodiscus_sinensis
ENSAMXG00000021023	smarca4a	83	88.786	ENSPEMG00000020389	Smarca4	97	82.732	Peromyscus_maniculatus_bairdii
ENSAMXG00000021023	smarca4a	95	88.476	ENSPFOG00000012930	-	97	78.944	Poecilia_formosa
ENSAMXG00000021023	smarca4a	84	83.873	ENSPFOG00000007892	smarca4a	98	82.316	Poecilia_formosa
ENSAMXG00000021023	smarca4a	85	89.016	ENSPLAG00000018616	-	97	84.694	Poecilia_latipinna
ENSAMXG00000021023	smarca4a	99	86.882	ENSPLAG00000014294	smarca4a	97	87.615	Poecilia_latipinna
ENSAMXG00000021023	smarca4a	98	83.506	ENSPMEG00000003725	smarca4a	97	83.992	Poecilia_mexicana
ENSAMXG00000021023	smarca4a	96	89.328	ENSPMEG00000008929	-	97	85.584	Poecilia_mexicana
ENSAMXG00000021023	smarca4a	99	83.584	ENSPREG00000014823	-	97	84.176	Poecilia_reticulata
ENSAMXG00000021023	smarca4a	98	83.653	ENSPREG00000014608	smarca4a	97	83.281	Poecilia_reticulata
ENSAMXG00000021023	smarca4a	83	86.848	ENSPPYG00000009568	SMARCA4	98	80.633	Pongo_abelii
ENSAMXG00000021023	smarca4a	77	92.308	ENSPCAG00000014054	SMARCA4	75	92.308	Procavia_capensis
ENSAMXG00000021023	smarca4a	98	87.500	ENSPCOG00000023011	SMARCA4	97	82.479	Propithecus_coquereli
ENSAMXG00000021023	smarca4a	77	87.054	ENSPVAG00000007787	SMARCA4	93	72.736	Pteropus_vampyrus
ENSAMXG00000021023	smarca4a	96	86.186	ENSPNYG00000023995	-	98	86.734	Pundamilia_nyererei
ENSAMXG00000021023	smarca4a	98	89.028	ENSPNYG00000000717	smarca4a	94	88.787	Pundamilia_nyererei
ENSAMXG00000021023	smarca4a	99	92.227	ENSPNAG00000024136	smarca4a	97	91.803	Pygocentrus_nattereri
ENSAMXG00000021023	smarca4a	96	84.432	ENSPNAG00000006636	-	97	83.798	Pygocentrus_nattereri
ENSAMXG00000021023	smarca4a	98	87.500	ENSRBIG00000038696	SMARCA4	97	82.826	Rhinopithecus_bieti
ENSAMXG00000021023	smarca4a	98	87.500	ENSRROG00000045509	SMARCA4	97	82.826	Rhinopithecus_roxellana
ENSAMXG00000021023	smarca4a	98	87.500	ENSSBOG00000026896	SMARCA4	95	88.202	Saimiri_boliviensis_boliviensis
ENSAMXG00000021023	smarca4a	99	90.215	ENSSFOG00015013823	smarca4	95	90.072	Scleropages_formosus
ENSAMXG00000021023	smarca4a	95	81.603	ENSSFOG00015009921	-	96	84.651	Scleropages_formosus
ENSAMXG00000021023	smarca4a	98	86.573	ENSSMAG00000003200	smarca4a	98	84.142	Scophthalmus_maximus
ENSAMXG00000021023	smarca4a	96	81.203	ENSSMAG00000014082	-	96	82.664	Scophthalmus_maximus
ENSAMXG00000021023	smarca4a	98	83.344	ENSSDUG00000017298	smarca4a	98	83.090	Seriola_dumerili
ENSAMXG00000021023	smarca4a	99	83.772	ENSSDUG00000005388	-	98	81.556	Seriola_dumerili
ENSAMXG00000021023	smarca4a	96	84.630	ENSSLDG00000023663	-	97	85.219	Seriola_lalandi_dorsalis
ENSAMXG00000021023	smarca4a	98	85.527	ENSSLDG00000024486	smarca4a	100	89.141	Seriola_lalandi_dorsalis
ENSAMXG00000021023	smarca4a	63	96.273	ENSSARG00000013477	SMARCA4	81	96.273	Sorex_araneus
ENSAMXG00000021023	smarca4a	99	83.638	ENSSPAG00000012533	-	96	84.510	Stegastes_partitus
ENSAMXG00000021023	smarca4a	98	88.577	ENSSPAG00000004248	smarca4a	97	88.730	Stegastes_partitus
ENSAMXG00000021023	smarca4a	54	81.368	ENSTGUG00000015488	-	98	81.213	Taeniopygia_guttata
ENSAMXG00000021023	smarca4a	90	83.345	ENSTRUG00000004885	smarca4a	100	83.837	Takifugu_rubripes
ENSAMXG00000021023	smarca4a	99	80.348	ENSTNIG00000004536	SMARCA4	97	80.955	Tetraodon_nigroviridis
ENSAMXG00000021023	smarca4a	83	85.185	ENSTTRG00000009519	SMARCA4	98	79.490	Tursiops_truncatus
ENSAMXG00000021023	smarca4a	99	85.541	ENSUMAG00000022005	SMARCA4	96	89.380	Ursus_maritimus
ENSAMXG00000021023	smarca4a	98	79.308	ENSXETG00000009355	smarca4	99	79.752	Xenopus_tropicalis
ENSAMXG00000021023	smarca4a	99	85.686	ENSXCOG00000013494	-	97	86.298	Xiphophorus_couchianus
ENSAMXG00000021023	smarca4a	99	85.565	ENSXMAG00000007030	-	97	86.182	Xiphophorus_maculatus
ENSAMXG00000021023	smarca4a	90	85.967	ENSXMAG00000006321	smarca4a	100	86.624	Xiphophorus_maculatus