EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000021477 (Gene tree)
Gene ID: 103042269
Gene Symbol: cstf2
Alias: CstF-64|fb11e07|wu:fb11e07|zgc:77730
Full Name: cleavage stimulation factor subunit 2
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 27407 bases
Position: chr24:16601807-16629213
Accession: 103042269
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000038076	RRM_1	PF00076.22	1.5e-24	1	1
ENSAMXP00000049108	RRM_1	PF00076.22	1.7e-24	1	1
ENSAMXP00000022118	RRM_1	PF00076.22	1.8e-24	1	1
ENSAMXP00000030648	RRM_1	PF00076.22	4.9e-23	1	1
ENSAMXP00000029411	RRM_1	PF00076.22	5.1e-23	1	1
ENSAMXP00000030747	RRM_1	PF00076.22	5.1e-23	1	1
ENSAMXP00000039754	RRM_1	PF00076.22	5.1e-23	1	1
ENSAMXP00000022119	RRM_1	PF00076.22	1.7e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000048413	-	4589	XM_022683664	ENSAMXP00000030747	532 (aa)	XP_022539385	UPI000BBDE4C0
ENSAMXT00000043032	-	4574	-	ENSAMXP00000039754	532 (aa)	-	UPI000BBDE4C0
ENSAMXT00000022119	-	984	-	ENSAMXP00000022119	327 (aa)	-	W5LQ41
ENSAMXT00000055888	-	4672	-	ENSAMXP00000030648	512 (aa)	-	-
ENSAMXT00000030121	-	5933	XM_007248760	ENSAMXP00000049108	514 (aa)	XP_007248822	UPI000BBDF5BF
ENSAMXT00000032859	-	4732	-	ENSAMXP00000029411	532 (aa)	-	UPI000BBDE4C0
ENSAMXT00000034986	-	4437	-	ENSAMXP00000038076	472 (aa)	-	-
ENSAMXT00000022118	-	4623	XM_022683662	ENSAMXP00000022118	534 (aa)	XP_022539383	W5LQ40

Gene Model

Click here to download ENSAMXG00000021477's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000021477's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000021477	cstf2	96	98.413	ENSG00000101811	CSTF2	94	82.464	Homo_sapiens
ENSAMXG00000021477	cstf2	96	98.438	ENSAPOG00000005630	cstf2	89	90.830	Acanthochromis_polyacanthus
ENSAMXG00000021477	cstf2	96	98.413	ENSAMEG00000002082	CSTF2	73	98.413	Ailuropoda_melanoleuca
ENSAMXG00000021477	cstf2	74	100.000	ENSACIG00000012852	cstf2	87	88.210	Amphilophus_citrinellus
ENSAMXG00000021477	cstf2	96	98.438	ENSAOCG00000020905	cstf2	90	89.520	Amphiprion_ocellaris
ENSAMXG00000021477	cstf2	96	98.438	ENSAPEG00000006526	cstf2	66	100.000	Amphiprion_percula
ENSAMXG00000021477	cstf2	96	98.438	ENSATEG00000018186	cstf2	90	90.830	Anabas_testudineus
ENSAMXG00000021477	cstf2	92	98.000	ENSAPLG00000007255	CSTF2	71	89.286	Anas_platyrhynchos
ENSAMXG00000021477	cstf2	96	98.413	ENSANAG00000022342	CSTF2	81	93.548	Aotus_nancymaae
ENSAMXG00000021477	cstf2	96	100.000	ENSACLG00000000779	cstf2	86	88.646	Astatotilapia_calliptera
ENSAMXG00000021477	cstf2	96	98.413	ENSBTAG00000003547	CSTF2	72	98.413	Bos_taurus
ENSAMXG00000021477	cstf2	96	98.413	ENSCJAG00000004422	CSTF2	81	93.548	Callithrix_jacchus
ENSAMXG00000021477	cstf2	96	98.413	ENSCAFG00000017551	CSTF2	92	80.784	Canis_familiaris
ENSAMXG00000021477	cstf2	96	98.413	ENSCAFG00020007619	CSTF2	94	79.752	Canis_lupus_dingo
ENSAMXG00000021477	cstf2	96	98.413	ENSCHIG00000016994	CSTF2	72	98.413	Capra_hircus
ENSAMXG00000021477	cstf2	96	98.413	ENSTSYG00000006529	CSTF2	72	98.413	Carlito_syrichta
ENSAMXG00000021477	cstf2	98	91.304	ENSCPOG00000015255	CSTF2	84	91.503	Cavia_porcellus
ENSAMXG00000021477	cstf2	96	98.413	ENSCCAG00000032975	CSTF2	81	93.548	Cebus_capucinus
ENSAMXG00000021477	cstf2	96	98.413	ENSCATG00000022835	CSTF2	72	98.413	Cercocebus_atys
ENSAMXG00000021477	cstf2	96	98.413	ENSCLAG00000001904	CSTF2	85	89.744	Chinchilla_lanigera
ENSAMXG00000021477	cstf2	96	98.413	ENSCSAG00000010360	CSTF2	72	98.413	Chlorocebus_sabaeus
ENSAMXG00000021477	cstf2	98	92.754	ENSCPBG00000014293	CSTF2	63	98.413	Chrysemys_picta_bellii
ENSAMXG00000021477	cstf2	96	98.413	ENSCANG00000030612	CSTF2	72	98.413	Colobus_angolensis_palliatus
ENSAMXG00000021477	cstf2	96	98.413	ENSCGRG00001023023	Cstf2	81	93.548	Cricetulus_griseus_chok1gshd
ENSAMXG00000021477	cstf2	96	96.825	ENSCGRG00000003897	Cstf2	71	96.825	Cricetulus_griseus_crigri
ENSAMXG00000021477	cstf2	96	100.000	ENSCVAG00000005731	cstf2	66	100.000	Cyprinodon_variegatus
ENSAMXG00000021477	cstf2	95	100.000	ENSDARG00000090788	cstf2	96	85.846	Danio_rerio
ENSAMXG00000021477	cstf2	98	91.304	ENSDORG00000007195	Cstf2	87	89.308	Dipodomys_ordii
ENSAMXG00000021477	cstf2	98	91.304	ENSEASG00005001216	CSTF2	78	93.548	Equus_asinus_asinus
ENSAMXG00000021477	cstf2	98	91.304	ENSECAG00000009325	CSTF2	81	93.548	Equus_caballus
ENSAMXG00000021477	cstf2	96	98.413	ENSFCAG00000007000	CSTF2	86	84.977	Felis_catus
ENSAMXG00000021477	cstf2	84	100.000	ENSFALG00000003859	CSTF2	70	100.000	Ficedula_albicollis
ENSAMXG00000021477	cstf2	96	98.413	ENSFDAG00000002416	CSTF2	94	80.165	Fukomys_damarensis
ENSAMXG00000021477	cstf2	96	98.413	ENSFHEG00000017065	cstf2	64	98.413	Fundulus_heteroclitus
ENSAMXG00000021477	cstf2	76	98.438	ENSGMOG00000005145	cstf2	67	98.438	Gadus_morhua
ENSAMXG00000021477	cstf2	98	91.304	ENSGALG00000006760	CSTF2	80	95.161	Gallus_gallus
ENSAMXG00000021477	cstf2	72	100.000	ENSGAFG00000020027	cstf2	90	89.520	Gambusia_affinis
ENSAMXG00000021477	cstf2	96	96.970	ENSGACG00000017326	cstf2	86	84.959	Gasterosteus_aculeatus
ENSAMXG00000021477	cstf2	98	92.754	ENSGAGG00000006037	CSTF2	65	98.413	Gopherus_agassizii
ENSAMXG00000021477	cstf2	96	98.413	ENSGGOG00000022267	CSTF2	72	98.413	Gorilla_gorilla
ENSAMXG00000021477	cstf2	96	100.000	ENSHBUG00000016183	cstf2	63	100.000	Haplochromis_burtoni
ENSAMXG00000021477	cstf2	96	80.822	ENSHGLG00000013455	-	80	79.032	Heterocephalus_glaber_female
ENSAMXG00000021477	cstf2	96	98.413	ENSHGLG00000000659	-	86	88.272	Heterocephalus_glaber_female
ENSAMXG00000021477	cstf2	96	80.822	ENSHGLG00100015391	-	80	80.108	Heterocephalus_glaber_male
ENSAMXG00000021477	cstf2	96	98.413	ENSHGLG00100001130	-	86	88.272	Heterocephalus_glaber_male
ENSAMXG00000021477	cstf2	100	92.500	ENSHCOG00000005157	cstf2	66	100.000	Hippocampus_comes
ENSAMXG00000021477	cstf2	100	94.737	ENSIPUG00000017839	cstf2	68	100.000	Ictalurus_punctatus
ENSAMXG00000021477	cstf2	96	98.413	ENSSTOG00000023445	CSTF2	85	89.744	Ictidomys_tridecemlineatus
ENSAMXG00000021477	cstf2	95	98.413	ENSJJAG00000020507	Cstf2	85	89.744	Jaculus_jaculus
ENSAMXG00000021477	cstf2	79	89.520	ENSKMAG00000001068	cstf2	89	89.565	Kryptolebias_marmoratus
ENSAMXG00000021477	cstf2	51	65.746	ENSLBEG00000028720	cstf2	93	96.610	Labrus_bergylta
ENSAMXG00000021477	cstf2	98	92.754	ENSLACG00000015927	CSTF2	73	98.413	Latimeria_chalumnae
ENSAMXG00000021477	cstf2	99	96.000	ENSLOCG00000015300	cstf2	73	96.000	Lepisosteus_oculatus
ENSAMXG00000021477	cstf2	96	98.413	ENSLAFG00000000474	CSTF2	72	98.413	Loxodonta_africana
ENSAMXG00000021477	cstf2	96	98.413	ENSMFAG00000043888	CSTF2	72	98.413	Macaca_fascicularis
ENSAMXG00000021477	cstf2	96	98.413	ENSMMUG00000013008	CSTF2	72	98.413	Macaca_mulatta
ENSAMXG00000021477	cstf2	96	98.413	ENSMNEG00000041824	CSTF2	72	98.413	Macaca_nemestrina
ENSAMXG00000021477	cstf2	96	98.413	ENSMLEG00000036870	CSTF2	72	98.413	Mandrillus_leucophaeus
ENSAMXG00000021477	cstf2	92	96.154	ENSMAMG00000020364	cstf2	92	89.130	Mastacembelus_armatus
ENSAMXG00000021477	cstf2	96	100.000	ENSMZEG00005007200	cstf2	90	88.646	Maylandia_zebra
ENSAMXG00000021477	cstf2	84	100.000	ENSMGAG00000004139	CSTF2	76	86.000	Meleagris_gallopavo
ENSAMXG00000021477	cstf2	96	98.413	ENSMAUG00000000965	Cstf2	81	93.548	Mesocricetus_auratus
ENSAMXG00000021477	cstf2	96	98.413	ENSMICG00000014121	CSTF2	73	98.413	Microcebus_murinus
ENSAMXG00000021477	cstf2	96	98.413	ENSMOCG00000008081	Cstf2	81	93.548	Microtus_ochrogaster
ENSAMXG00000021477	cstf2	80	96.875	ENSMMOG00000000538	cstf2	96	89.238	Mola_mola
ENSAMXG00000021477	cstf2	98	92.754	ENSMODG00000011785	CSTF2	73	98.413	Monodelphis_domestica
ENSAMXG00000021477	cstf2	96	98.413	MGP_CAROLIEiJ_G0033383	Cstf2	94	80.992	Mus_caroli
ENSAMXG00000021477	cstf2	96	98.413	ENSMUSG00000031256	Cstf2	84	90.323	Mus_musculus
ENSAMXG00000021477	cstf2	96	98.413	MGP_PahariEiJ_G0031923	Cstf2	94	80.992	Mus_pahari
ENSAMXG00000021477	cstf2	96	98.413	MGP_SPRETEiJ_G0034548	Cstf2	94	80.992	Mus_spretus
ENSAMXG00000021477	cstf2	96	98.413	ENSMPUG00000002339	CSTF2	93	80.784	Mustela_putorius_furo
ENSAMXG00000021477	cstf2	96	98.413	ENSMLUG00000004598	CSTF2	91	80.876	Myotis_lucifugus
ENSAMXG00000021477	cstf2	96	98.413	ENSNGAG00000021985	Cstf2	92	81.569	Nannospalax_galili
ENSAMXG00000021477	cstf2	91	97.959	ENSNBRG00000021694	cstf2	64	97.959	Neolamprologus_brichardi
ENSAMXG00000021477	cstf2	96	98.413	ENSNLEG00000007510	CSTF2	72	98.413	Nomascus_leucogenys
ENSAMXG00000021477	cstf2	98	92.754	ENSMEUG00000011186	-	92	78.367	Notamacropus_eugenii
ENSAMXG00000021477	cstf2	93	59.108	ENSMEUG00000014025	-	92	73.000	Notamacropus_eugenii
ENSAMXG00000021477	cstf2	98	92.754	ENSMEUG00000007875	-	71	98.413	Notamacropus_eugenii
ENSAMXG00000021477	cstf2	76	90.000	ENSOPRG00000003106	CSTF2	81	79.894	Ochotona_princeps
ENSAMXG00000021477	cstf2	96	98.413	ENSODEG00000002059	CSTF2	92	81.673	Octodon_degus
ENSAMXG00000021477	cstf2	82	94.340	ENSOANG00000004208	CSTF2	52	85.345	Ornithorhynchus_anatinus
ENSAMXG00000021477	cstf2	96	98.413	ENSOCUG00000010468	CSTF2	71	98.413	Oryctolagus_cuniculus
ENSAMXG00000021477	cstf2	71	98.413	ENSORLG00000001380	cstf2	89	87.013	Oryzias_latipes
ENSAMXG00000021477	cstf2	71	98.413	ENSORLG00020021917	cstf2	89	86.580	Oryzias_latipes_hni
ENSAMXG00000021477	cstf2	71	98.413	ENSORLG00015011996	cstf2	89	87.013	Oryzias_latipes_hsok
ENSAMXG00000021477	cstf2	71	98.413	ENSOMEG00000015507	cstf2	88	88.696	Oryzias_melastigma
ENSAMXG00000021477	cstf2	96	98.413	ENSOGAG00000011192	CSTF2	74	98.413	Otolemur_garnettii
ENSAMXG00000021477	cstf2	96	98.413	ENSOARG00000001022	CSTF2	72	98.413	Ovis_aries
ENSAMXG00000021477	cstf2	96	98.413	ENSPPAG00000031804	CSTF2	72	98.413	Pan_paniscus
ENSAMXG00000021477	cstf2	96	98.413	ENSPPRG00000022492	CSTF2	86	84.977	Panthera_pardus
ENSAMXG00000021477	cstf2	96	95.238	ENSPTIG00000009922	CSTF2	86	84.038	Panthera_tigris_altaica
ENSAMXG00000021477	cstf2	96	98.413	ENSPTRG00000022090	CSTF2	72	98.413	Pan_troglodytes
ENSAMXG00000021477	cstf2	96	98.413	ENSPANG00000002303	CSTF2	94	79.339	Papio_anubis
ENSAMXG00000021477	cstf2	99	94.737	ENSPKIG00000005033	cstf2	88	89.744	Paramormyrops_kingsleyae
ENSAMXG00000021477	cstf2	96	100.000	ENSPMGG00000006534	cstf2	90	90.830	Periophthalmus_magnuspinnatus
ENSAMXG00000021477	cstf2	96	98.413	ENSPEMG00000019415	Cstf2	85	85.714	Peromyscus_maniculatus_bairdii
ENSAMXG00000021477	cstf2	98	92.754	ENSPCIG00000002989	CSTF2	89	85.425	Phascolarctos_cinereus
ENSAMXG00000021477	cstf2	72	100.000	ENSPLAG00000011176	cstf2	66	100.000	Poecilia_latipinna
ENSAMXG00000021477	cstf2	72	100.000	ENSPMEG00000017743	cstf2	66	100.000	Poecilia_mexicana
ENSAMXG00000021477	cstf2	91	100.000	ENSPREG00000011481	cstf2	73	87.356	Poecilia_reticulata
ENSAMXG00000021477	cstf2	96	98.413	ENSPPYG00000020541	CSTF2	72	98.413	Pongo_abelii
ENSAMXG00000021477	cstf2	98	91.304	ENSPCOG00000027744	CSTF2	72	98.413	Propithecus_coquereli
ENSAMXG00000021477	cstf2	84	96.000	ENSPVAG00000008342	CSTF2	55	96.000	Pteropus_vampyrus
ENSAMXG00000021477	cstf2	71	100.000	ENSPNYG00000010852	cstf2	94	93.151	Pundamilia_nyererei
ENSAMXG00000021477	cstf2	96	98.438	ENSPNAG00000018887	cstf2	68	98.438	Pygocentrus_nattereri
ENSAMXG00000021477	cstf2	96	98.413	ENSRNOG00000048025	Cstf2	94	81.176	Rattus_norvegicus
ENSAMXG00000021477	cstf2	96	98.413	ENSRBIG00000030745	CSTF2	71	98.413	Rhinopithecus_bieti
ENSAMXG00000021477	cstf2	96	98.413	ENSRROG00000045042	CSTF2	72	98.413	Rhinopithecus_roxellana
ENSAMXG00000021477	cstf2	96	98.413	ENSSBOG00000021649	CSTF2	81	93.548	Saimiri_boliviensis_boliviensis
ENSAMXG00000021477	cstf2	92	98.000	ENSSHAG00000003681	CSTF2	82	84.188	Sarcophilus_harrisii
ENSAMXG00000021477	cstf2	96	100.000	ENSSFOG00015006348	cstf2	69	100.000	Scleropages_formosus
ENSAMXG00000021477	cstf2	72	98.438	ENSSMAG00000013463	cstf2	89	89.083	Scophthalmus_maximus
ENSAMXG00000021477	cstf2	98	91.304	ENSSPUG00000005288	-	82	85.657	Sphenodon_punctatus
ENSAMXG00000021477	cstf2	96	98.413	ENSSSCG00000012486	CSTF2	81	93.548	Sus_scrofa
ENSAMXG00000021477	cstf2	98	91.304	ENSTGUG00000002253	CSTF2	67	98.413	Taeniopygia_guttata
ENSAMXG00000021477	cstf2	96	100.000	ENSTNIG00000016860	cstf2	68	100.000	Tetraodon_nigroviridis
ENSAMXG00000021477	cstf2	96	98.413	ENSTTRG00000013556	CSTF2	86	84.977	Tursiops_truncatus
ENSAMXG00000021477	cstf2	96	98.413	ENSUAMG00000026605	CSTF2	86	84.977	Ursus_americanus
ENSAMXG00000021477	cstf2	96	96.825	ENSUMAG00000012417	CSTF2	89	80.709	Ursus_maritimus
ENSAMXG00000021477	cstf2	65	95.238	ENSVPAG00000006466	CSTF2	50	78.088	Vicugna_pacos
ENSAMXG00000021477	cstf2	96	98.413	ENSVVUG00000004717	CSTF2	92	80.784	Vulpes_vulpes
ENSAMXG00000021477	cstf2	96	98.413	ENSXETG00000009642	cstf2	67	98.413	Xenopus_tropicalis
ENSAMXG00000021477	cstf2	96	100.000	ENSXCOG00000016436	cstf2	92	98.485	Xiphophorus_couchianus
ENSAMXG00000021477	cstf2	72	86.207	ENSXMAG00000013524	cstf2	74	86.973	Xiphophorus_maculatus