EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000021794 (Gene tree)
Gene ID: 103026221
Gene Symbol: rbm47
Alias: si:ch211-241e15.2|wu:fj94a03
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 40657 bases
Position: chr21:17612367-17653023
Accession: 103026221
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000022447	RRM_1	PF00076.22	1.5e-38	1	3
ENSAMXP00000022447	RRM_1	PF00076.22	1.5e-38	2	3
ENSAMXP00000022447	RRM_1	PF00076.22	1.5e-38	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000022447	-	2308	XM_007230248	ENSAMXP00000022447	603 (aa)	XP_007230310	W5LQM6

Gene Model

Click here to download ENSAMXG00000021794's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000021794's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000021794	rbm47	51	51.923	ENSAMXG00000034257	syncrip	69	43.678
ENSAMXG00000021794	rbm47	51	52.396	ENSAMXG00000030806	syncripl	78	45.588
ENSAMXG00000021794	rbm47	77	46.981	ENSAMXG00000018180	a1cf	92	45.534
ENSAMXG00000021794	rbm47	51	62.460	ENSAMXG00000020892	-	59	63.754

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000021794	rbm47	95	84.078	ENSG00000163694	RBM47	100	81.223	Homo_sapiens
ENSAMXG00000021794	rbm47	100	85.678	ENSAPOG00000011062	rbm47	100	83.668	Acanthochromis_polyacanthus
ENSAMXG00000021794	rbm47	95	75.945	ENSAMEG00000009672	RBM47	100	74.919	Ailuropoda_melanoleuca
ENSAMXG00000021794	rbm47	100	81.311	ENSACIG00000011531	rbm47	97	85.294	Amphilophus_citrinellus
ENSAMXG00000021794	rbm47	100	86.041	ENSAOCG00000022245	rbm47	100	83.089	Amphiprion_ocellaris
ENSAMXG00000021794	rbm47	100	86.041	ENSAPEG00000018304	rbm47	100	83.166	Amphiprion_percula
ENSAMXG00000021794	rbm47	100	82.815	ENSATEG00000018400	rbm47	100	82.651	Anabas_testudineus
ENSAMXG00000021794	rbm47	100	75.082	ENSAPLG00000013974	RBM47	96	77.123	Anas_platyrhynchos
ENSAMXG00000021794	rbm47	100	74.675	ENSACAG00000011833	RBM47	96	77.015	Anolis_carolinensis
ENSAMXG00000021794	rbm47	100	80.256	ENSANAG00000029440	RBM47	98	79.699	Aotus_nancymaae
ENSAMXG00000021794	rbm47	100	87.371	ENSACLG00000016902	rbm47	100	87.113	Astatotilapia_calliptera
ENSAMXG00000021794	rbm47	100	75.534	ENSBTAG00000002356	RBM47	100	75.862	Bos_taurus
ENSAMXG00000021794	rbm47	95	83.149	ENSCJAG00000019385	RBM47	98	79.699	Callithrix_jacchus
ENSAMXG00000021794	rbm47	94	77.043	ENSCAFG00000015898	RBM47	100	75.369	Canis_familiaris
ENSAMXG00000021794	rbm47	81	82.584	ENSCAFG00020010558	RBM47	94	79.897	Canis_lupus_dingo
ENSAMXG00000021794	rbm47	100	75.534	ENSCHIG00000026214	RBM47	100	75.862	Capra_hircus
ENSAMXG00000021794	rbm47	84	87.892	ENSTSYG00000033612	RBM47	92	87.892	Carlito_syrichta
ENSAMXG00000021794	rbm47	100	72.751	ENSCAPG00000008426	RBM47	100	69.444	Cavia_aperea
ENSAMXG00000021794	rbm47	100	79.744	ENSCPOG00000014100	RBM47	100	74.715	Cavia_porcellus
ENSAMXG00000021794	rbm47	99	53.125	ENSCCAG00000024397	-	99	52.632	Cebus_capucinus
ENSAMXG00000021794	rbm47	100	81.443	ENSCCAG00000030129	-	98	79.198	Cebus_capucinus
ENSAMXG00000021794	rbm47	95	84.078	ENSCATG00000042064	RBM47	100	76.112	Cercocebus_atys
ENSAMXG00000021794	rbm47	95	83.240	ENSCLAG00000001684	RBM47	100	77.059	Chinchilla_lanigera
ENSAMXG00000021794	rbm47	95	77.108	ENSCSAG00000017060	RBM47	100	75.367	Chlorocebus_sabaeus
ENSAMXG00000021794	rbm47	84	77.123	ENSCHOG00000011731	RBM47	88	75.219	Choloepus_hoffmanni
ENSAMXG00000021794	rbm47	100	77.850	ENSCPBG00000013831	RBM47	96	80.551	Chrysemys_picta_bellii
ENSAMXG00000021794	rbm47	95	83.799	ENSCANG00000019997	RBM47	100	75.947	Colobus_angolensis_palliatus
ENSAMXG00000021794	rbm47	100	75.064	ENSCGRG00001020102	-	100	56.126	Cricetulus_griseus_chok1gshd
ENSAMXG00000021794	rbm47	100	79.897	ENSCGRG00001000623	-	100	80.412	Cricetulus_griseus_chok1gshd
ENSAMXG00000021794	rbm47	100	72.757	ENSCGRG00000007762	-	100	76.471	Cricetulus_griseus_crigri
ENSAMXG00000021794	rbm47	100	74.550	ENSCGRG00000014760	-	97	57.812	Cricetulus_griseus_crigri
ENSAMXG00000021794	rbm47	95	81.520	ENSCSEG00000004545	rbm47	97	82.586	Cynoglossus_semilaevis
ENSAMXG00000021794	rbm47	100	84.910	ENSCVAG00000020144	rbm47	100	82.915	Cyprinodon_variegatus
ENSAMXG00000021794	rbm47	100	89.718	ENSDARG00000061985	rbm47	100	89.718	Danio_rerio
ENSAMXG00000021794	rbm47	95	78.147	ENSDNOG00000046854	RBM47	100	76.656	Dasypus_novemcinctus
ENSAMXG00000021794	rbm47	100	74.797	ENSDORG00000010144	Rbm47	100	74.797	Dipodomys_ordii
ENSAMXG00000021794	rbm47	95	77.281	ENSETEG00000009194	RBM47	100	75.693	Echinops_telfairi
ENSAMXG00000021794	rbm47	93	61.419	ENSEBUG00000011912	rbm47	95	61.672	Eptatretus_burgeri
ENSAMXG00000021794	rbm47	95	77.643	ENSEASG00005008443	RBM47	100	75.698	Equus_asinus_asinus
ENSAMXG00000021794	rbm47	95	77.643	ENSECAG00000004400	RBM47	100	75.698	Equus_caballus
ENSAMXG00000021794	rbm47	70	88.095	ENSEEUG00000001194	RBM47	75	82.231	Erinaceus_europaeus
ENSAMXG00000021794	rbm47	100	78.502	ENSELUG00000006148	rbm47	100	84.848	Esox_lucius
ENSAMXG00000021794	rbm47	95	78.125	ENSFCAG00000012399	RBM47	100	76.151	Felis_catus
ENSAMXG00000021794	rbm47	100	76.471	ENSFALG00000002861	RBM47	96	79.275	Ficedula_albicollis
ENSAMXG00000021794	rbm47	100	78.718	ENSFDAG00000016326	RBM47	100	74.632	Fukomys_damarensis
ENSAMXG00000021794	rbm47	100	81.773	ENSFHEG00000007938	rbm47	100	81.609	Fundulus_heteroclitus
ENSAMXG00000021794	rbm47	100	79.968	ENSGMOG00000014802	rbm47	100	78.514	Gadus_morhua
ENSAMXG00000021794	rbm47	64	82.474	ENSGALG00000014267	RBM47	99	81.959	Gallus_gallus
ENSAMXG00000021794	rbm47	64	84.238	ENSGAFG00000020571	rbm47	94	89.859	Gambusia_affinis
ENSAMXG00000021794	rbm47	100	80.556	ENSGACG00000016223	rbm47	100	83.632	Gasterosteus_aculeatus
ENSAMXG00000021794	rbm47	100	77.524	ENSGAGG00000020051	RBM47	96	80.551	Gopherus_agassizii
ENSAMXG00000021794	rbm47	95	84.078	ENSGGOG00000001367	RBM47	100	76.112	Gorilla_gorilla
ENSAMXG00000021794	rbm47	100	87.371	ENSHBUG00000003520	rbm47	100	87.113	Haplochromis_burtoni
ENSAMXG00000021794	rbm47	84	62.051	ENSHGLG00000016914	RBM47	100	75.882	Heterocephalus_glaber_female
ENSAMXG00000021794	rbm47	100	80.000	ENSHGLG00100014028	-	100	75.882	Heterocephalus_glaber_male
ENSAMXG00000021794	rbm47	100	67.377	ENSHGLG00100003071	-	100	66.885	Heterocephalus_glaber_male
ENSAMXG00000021794	rbm47	99	80.890	ENSHCOG00000002074	rbm47	99	81.848	Hippocampus_comes
ENSAMXG00000021794	rbm47	100	88.079	ENSIPUG00000004743	rbm47	100	88.245	Ictalurus_punctatus
ENSAMXG00000021794	rbm47	95	83.520	ENSSTOG00000004727	RBM47	100	76.471	Ictidomys_tridecemlineatus
ENSAMXG00000021794	rbm47	95	77.241	ENSJJAG00000013823	Rbm47	100	74.673	Jaculus_jaculus
ENSAMXG00000021794	rbm47	100	81.803	ENSKMAG00000000084	rbm47	100	85.934	Kryptolebias_marmoratus
ENSAMXG00000021794	rbm47	100	82.899	ENSLBEG00000008436	rbm47	99	83.887	Labrus_bergylta
ENSAMXG00000021794	rbm47	100	77.087	ENSLACG00000007196	RBM47	100	77.087	Latimeria_chalumnae
ENSAMXG00000021794	rbm47	95	85.192	ENSLOCG00000012966	rbm47	95	82.537	Lepisosteus_oculatus
ENSAMXG00000021794	rbm47	100	75.000	ENSLAFG00000011998	RBM47	100	75.327	Loxodonta_africana
ENSAMXG00000021794	rbm47	95	84.078	ENSMFAG00000037967	RBM47	100	76.112	Macaca_fascicularis
ENSAMXG00000021794	rbm47	95	77.108	ENSMMUG00000012036	RBM47	100	79.024	Macaca_mulatta
ENSAMXG00000021794	rbm47	95	84.078	ENSMNEG00000040774	RBM47	100	76.112	Macaca_nemestrina
ENSAMXG00000021794	rbm47	95	87.458	ENSMLEG00000041432	RBM47	100	83.180	Mandrillus_leucophaeus
ENSAMXG00000021794	rbm47	100	82.843	ENSMAMG00000019143	rbm47	100	81.331	Mastacembelus_armatus
ENSAMXG00000021794	rbm47	100	87.371	ENSMZEG00005023659	rbm47	100	87.113	Maylandia_zebra
ENSAMXG00000021794	rbm47	100	76.260	ENSMGAG00000012226	RBM47	96	78.866	Meleagris_gallopavo
ENSAMXG00000021794	rbm47	100	79.949	ENSMAUG00000006493	Rbm47	100	80.463	Mesocricetus_auratus
ENSAMXG00000021794	rbm47	94	81.408	ENSMICG00000026417	RBM47	100	78.866	Microcebus_murinus
ENSAMXG00000021794	rbm47	100	79.897	ENSMOCG00000021170	Rbm47	100	80.155	Microtus_ochrogaster
ENSAMXG00000021794	rbm47	100	83.142	ENSMMOG00000007260	rbm47	100	83.470	Mola_mola
ENSAMXG00000021794	rbm47	100	77.087	ENSMODG00000007003	RBM47	100	75.574	Monodelphis_domestica
ENSAMXG00000021794	rbm47	51	78.481	ENSMODG00000015426	-	98	78.730	Monodelphis_domestica
ENSAMXG00000021794	rbm47	100	72.112	ENSMODG00000020561	-	96	74.650	Monodelphis_domestica
ENSAMXG00000021794	rbm47	100	86.154	ENSMALG00000005167	rbm47	100	85.347	Monopterus_albus
ENSAMXG00000021794	rbm47	100	79.897	MGP_CAROLIEiJ_G0027258	Rbm47	100	80.412	Mus_caroli
ENSAMXG00000021794	rbm47	100	79.897	ENSMUSG00000070780	Rbm47	100	80.412	Mus_musculus
ENSAMXG00000021794	rbm47	100	79.897	MGP_PahariEiJ_G0017040	Rbm47	100	80.412	Mus_pahari
ENSAMXG00000021794	rbm47	100	79.897	MGP_SPRETEiJ_G0028253	Rbm47	100	80.412	Mus_spretus
ENSAMXG00000021794	rbm47	95	76.857	ENSMPUG00000006177	RBM47	94	74.795	Mustela_putorius_furo
ENSAMXG00000021794	rbm47	100	75.987	ENSMLUG00000000889	RBM47	100	75.493	Myotis_lucifugus
ENSAMXG00000021794	rbm47	100	74.510	ENSNGAG00000003325	Rbm47	100	74.346	Nannospalax_galili
ENSAMXG00000021794	rbm47	100	81.656	ENSNBRG00000015092	rbm47	100	82.792	Neolamprologus_brichardi
ENSAMXG00000021794	rbm47	95	84.078	ENSNLEG00000017151	RBM47	100	75.947	Nomascus_leucogenys
ENSAMXG00000021794	rbm47	70	80.047	ENSMEUG00000009516	-	99	80.047	Notamacropus_eugenii
ENSAMXG00000021794	rbm47	76	84.298	ENSOPRG00000016507	-	75	84.298	Ochotona_princeps
ENSAMXG00000021794	rbm47	95	75.952	ENSODEG00000004873	RBM47	100	75.327	Octodon_degus
ENSAMXG00000021794	rbm47	100	82.573	ENSONIG00000009061	rbm47	100	82.410	Oreochromis_niloticus
ENSAMXG00000021794	rbm47	100	75.908	ENSOANG00000008978	RBM47	100	76.568	Ornithorhynchus_anatinus
ENSAMXG00000021794	rbm47	100	74.877	ENSOCUG00000012034	RBM47	100	75.862	Oryctolagus_cuniculus
ENSAMXG00000021794	rbm47	100	85.128	ENSORLG00000005847	rbm47	100	85.567	Oryzias_latipes
ENSAMXG00000021794	rbm47	100	85.128	ENSORLG00020005154	rbm47	100	85.567	Oryzias_latipes_hni
ENSAMXG00000021794	rbm47	100	85.128	ENSORLG00015000066	rbm47	100	82.923	Oryzias_latipes_hsok
ENSAMXG00000021794	rbm47	100	83.607	ENSOMEG00000010730	rbm47	100	83.607	Oryzias_melastigma
ENSAMXG00000021794	rbm47	95	77.375	ENSOGAG00000029367	-	100	74.715	Otolemur_garnettii
ENSAMXG00000021794	rbm47	95	71.924	ENSOGAG00000025193	-	100	70.443	Otolemur_garnettii
ENSAMXG00000021794	rbm47	100	67.763	ENSOARG00000012711	RBM47	100	68.257	Ovis_aries
ENSAMXG00000021794	rbm47	95	77.913	ENSPPAG00000029763	RBM47	100	76.112	Pan_paniscus
ENSAMXG00000021794	rbm47	95	83.333	ENSPPRG00000012873	RBM47	100	80.412	Panthera_pardus
ENSAMXG00000021794	rbm47	83	75.944	ENSPTIG00000017046	RBM47	100	75.746	Panthera_tigris_altaica
ENSAMXG00000021794	rbm47	95	84.078	ENSPTRG00000016006	RBM47	100	76.112	Pan_troglodytes
ENSAMXG00000021794	rbm47	95	84.078	ENSPANG00000005980	RBM47	100	76.112	Papio_anubis
ENSAMXG00000021794	rbm47	95	89.577	ENSPKIG00000005037	rbm47	100	79.373	Paramormyrops_kingsleyae
ENSAMXG00000021794	rbm47	95	78.920	ENSPKIG00000013431	RBM47	97	78.920	Paramormyrops_kingsleyae
ENSAMXG00000021794	rbm47	89	79.374	ENSPSIG00000017516	RBM47	93	82.353	Pelodiscus_sinensis
ENSAMXG00000021794	rbm47	95	82.609	ENSPMGG00000018540	rbm47	100	81.250	Periophthalmus_magnuspinnatus
ENSAMXG00000021794	rbm47	100	79.897	ENSPEMG00000011088	Rbm47	100	80.155	Peromyscus_maniculatus_bairdii
ENSAMXG00000021794	rbm47	100	81.068	ENSPFOG00000007997	rbm47	100	80.583	Poecilia_formosa
ENSAMXG00000021794	rbm47	100	81.199	ENSPLAG00000002072	rbm47	97	89.859	Poecilia_latipinna
ENSAMXG00000021794	rbm47	100	80.293	ENSPMEG00000017492	rbm47	93	89.859	Poecilia_mexicana
ENSAMXG00000021794	rbm47	100	81.524	ENSPREG00000008456	rbm47	97	90.141	Poecilia_reticulata
ENSAMXG00000021794	rbm47	95	67.966	ENSPPYG00000014688	RBM47	99	67.966	Pongo_abelii
ENSAMXG00000021794	rbm47	82	79.177	ENSPCAG00000011879	RBM47	81	80.145	Procavia_capensis
ENSAMXG00000021794	rbm47	94	82.303	ENSPCOG00000023451	RBM47	100	78.866	Propithecus_coquereli
ENSAMXG00000021794	rbm47	95	77.414	ENSPVAG00000003812	RBM47	100	74.673	Pteropus_vampyrus
ENSAMXG00000021794	rbm47	100	81.392	ENSPNYG00000022868	rbm47	100	82.362	Pundamilia_nyererei
ENSAMXG00000021794	rbm47	100	91.060	ENSPNAG00000007940	rbm47	100	91.225	Pygocentrus_nattereri
ENSAMXG00000021794	rbm47	100	74.262	ENSRNOG00000002408	Rbm47	100	74.754	Rattus_norvegicus
ENSAMXG00000021794	rbm47	95	83.799	ENSRBIG00000039601	RBM47	100	75.947	Rhinopithecus_bieti
ENSAMXG00000021794	rbm47	95	83.799	ENSRROG00000044696	RBM47	100	75.947	Rhinopithecus_roxellana
ENSAMXG00000021794	rbm47	100	73.388	ENSSBOG00000028475	RBM47	100	77.555	Saimiri_boliviensis_boliviensis
ENSAMXG00000021794	rbm47	100	76.645	ENSSHAG00000017576	RBM47	100	76.847	Sarcophilus_harrisii
ENSAMXG00000021794	rbm47	98	79.027	ENSSFOG00015024101	RBM47	97	80.174	Scleropages_formosus
ENSAMXG00000021794	rbm47	94	85.897	ENSSFOG00015012445	rbm47	100	80.132	Scleropages_formosus
ENSAMXG00000021794	rbm47	100	85.422	ENSSMAG00000009744	rbm47	100	84.359	Scophthalmus_maximus
ENSAMXG00000021794	rbm47	100	82.951	ENSSDUG00000022684	rbm47	100	82.843	Seriola_dumerili
ENSAMXG00000021794	rbm47	100	85.642	ENSSLDG00000003109	rbm47	100	82.623	Seriola_lalandi_dorsalis
ENSAMXG00000021794	rbm47	85	78.261	ENSSARG00000001735	RBM47	81	78.696	Sorex_araneus
ENSAMXG00000021794	rbm47	100	82.353	ENSSPUG00000007515	RBM47	100	81.841	Sphenodon_punctatus
ENSAMXG00000021794	rbm47	100	86.701	ENSSPAG00000001257	rbm47	97	86.482	Stegastes_partitus
ENSAMXG00000021794	rbm47	95	84.034	ENSSSCG00000008796	RBM47	100	75.862	Sus_scrofa
ENSAMXG00000021794	rbm47	100	76.596	ENSTGUG00000008705	RBM47	96	79.412	Taeniopygia_guttata
ENSAMXG00000021794	rbm47	95	83.333	ENSTRUG00000014050	rbm47	98	83.681	Takifugu_rubripes
ENSAMXG00000021794	rbm47	100	81.311	ENSTNIG00000006127	rbm47	100	82.131	Tetraodon_nigroviridis
ENSAMXG00000021794	rbm47	72	82.865	ENSTBEG00000001607	RBM47	76	78.866	Tupaia_belangeri
ENSAMXG00000021794	rbm47	95	78.397	ENSTTRG00000002839	RBM47	100	76.073	Tursiops_truncatus
ENSAMXG00000021794	rbm47	95	77.375	ENSUAMG00000021346	RBM47	100	75.614	Ursus_americanus
ENSAMXG00000021794	rbm47	52	84.921	ENSVPAG00000000641	-	56	76.433	Vicugna_pacos
ENSAMXG00000021794	rbm47	94	78.049	ENSVVUG00000014774	RBM47	100	75.987	Vulpes_vulpes
ENSAMXG00000021794	rbm47	100	75.246	ENSXETG00000012802	rbm47	100	75.410	Xenopus_tropicalis
ENSAMXG00000021794	rbm47	89	84.238	ENSXCOG00000000780	rbm47	97	89.859	Xiphophorus_couchianus
ENSAMXG00000021794	rbm47	100	81.951	ENSXMAG00000009874	rbm47	100	84.910	Xiphophorus_maculatus