EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000024616 (Gene tree)
Gene ID: 103035711
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 39923 bases
Position: chrAPWO02000037.1:1060182-1100104
Accession: 103035711
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000025321	EST1	PF10374.9	4.7e-24	1	1
ENSAMXP00000025320	EST1	PF10374.9	4.7e-24	1	1
ENSAMXP00000025320	EST1_DNA_bind	PF10373.9	3.5e-42	1	1
ENSAMXP00000025321	EST1_DNA_bind	PF10373.9	6.4e-40	1	1
ENSAMXP00000025320	PIN_4	PF13638.6	1.1e-06	1	1
ENSAMXP00000025321	PIN_4	PF13638.6	1.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000025339	-	3270	-	ENSAMXP00000025321	1089 (aa)	-	W5LR47
ENSAMXT00000025338	-	4148	XM_022668751	ENSAMXP00000025320	1093 (aa)	XP_022524472	W5LR46

Gene Model

Click here to download ENSAMXG00000024616's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000024616's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000024616	smg5	100	78.742	ENSAPOG00000019690	smg5	100	78.989	Acanthochromis_polyacanthus
ENSAMXG00000024616	smg5	100	77.879	ENSACIG00000001353	smg5	99	77.306	Amphilophus_citrinellus
ENSAMXG00000024616	smg5	100	79.628	ENSAOCG00000019483	smg5	100	79.359	Amphiprion_ocellaris
ENSAMXG00000024616	smg5	100	79.717	ENSAPEG00000022949	smg5	100	79.359	Amphiprion_percula
ENSAMXG00000024616	smg5	100	78.891	ENSATEG00000005348	smg5	100	79.070	Anabas_testudineus
ENSAMXG00000024616	smg5	100	78.723	ENSACLG00000009311	smg5	100	79.041	Astatotilapia_calliptera
ENSAMXG00000024616	smg5	95	47.854	ENSBTAG00000021747	-	88	50.000	Bos_taurus
ENSAMXG00000024616	smg5	99	62.976	ENSCAFG00000016839	SMG5	51	59.444	Canis_familiaris
ENSAMXG00000024616	smg5	99	62.976	ENSCAFG00020006061	SMG5	51	59.444	Canis_lupus_dingo
ENSAMXG00000024616	smg5	78	51.605	ENSCHIG00000006323	-	86	51.605	Capra_hircus
ENSAMXG00000024616	smg5	97	47.413	ENSCAPG00000003631	SMG5	90	54.647	Cavia_aperea
ENSAMXG00000024616	smg5	52	76.173	ENSCHOG00000008741	-	56	76.173	Choloepus_hoffmanni
ENSAMXG00000024616	smg5	77	38.636	ENSCING00000008706	-	84	38.636	Ciona_intestinalis
ENSAMXG00000024616	smg5	100	77.451	ENSCSEG00000014220	smg5	100	78.044	Cynoglossus_semilaevis
ENSAMXG00000024616	smg5	100	69.565	ENSCVAG00000000529	smg5	99	69.022	Cyprinodon_variegatus
ENSAMXG00000024616	smg5	100	83.078	ENSDARG00000041481	smg5	100	82.671	Danio_rerio
ENSAMXG00000024616	smg5	75	39.578	ENSDNOG00000039862	-	90	39.578	Dasypus_novemcinctus
ENSAMXG00000024616	smg5	76	84.466	ENSETEG00000010336	SMG5	63	84.466	Echinops_telfairi
ENSAMXG00000024616	smg5	91	42.448	ENSEBUG00000003739	smg5	78	55.330	Eptatretus_burgeri
ENSAMXG00000024616	smg5	67	79.598	ENSEEUG00000012690	SMG5	75	79.598	Erinaceus_europaeus
ENSAMXG00000024616	smg5	100	81.071	ENSELUG00000012585	smg5	100	80.610	Esox_lucius
ENSAMXG00000024616	smg5	60	63.609	ENSFALG00000001166	-	98	59.776	Ficedula_albicollis
ENSAMXG00000024616	smg5	85	86.349	ENSFHEG00000013939	smg5	95	86.349	Fundulus_heteroclitus
ENSAMXG00000024616	smg5	100	75.552	ENSGMOG00000007310	smg5	100	76.279	Gadus_morhua
ENSAMXG00000024616	smg5	99	64.572	ENSGALG00000029918	-	91	74.171	Gallus_gallus
ENSAMXG00000024616	smg5	93	86.129	ENSGAFG00000021691	smg5	99	86.129	Gambusia_affinis
ENSAMXG00000024616	smg5	100	78.044	ENSGACG00000013142	smg5	100	78.292	Gasterosteus_aculeatus
ENSAMXG00000024616	smg5	100	78.673	ENSHBUG00000008654	smg5	100	79.115	Haplochromis_burtoni
ENSAMXG00000024616	smg5	85	78.700	ENSHCOG00000010229	smg5	92	84.198	Hippocampus_comes
ENSAMXG00000024616	smg5	100	85.870	ENSIPUG00000006624	Smg5	100	85.727	Ictalurus_punctatus
ENSAMXG00000024616	smg5	100	78.635	ENSKMAG00000014586	smg5	100	78.496	Kryptolebias_marmoratus
ENSAMXG00000024616	smg5	100	80.053	ENSLBEG00000002145	smg5	100	79.857	Labrus_bergylta
ENSAMXG00000024616	smg5	99	58.416	ENSLACG00000010521	SMG5	99	57.734	Latimeria_chalumnae
ENSAMXG00000024616	smg5	100	70.530	ENSLOCG00000008380	smg5	99	74.732	Lepisosteus_oculatus
ENSAMXG00000024616	smg5	99	57.414	ENSMLEG00000041192	SMG5	92	68.558	Mandrillus_leucophaeus
ENSAMXG00000024616	smg5	100	77.876	ENSMAMG00000010683	smg5	100	78.610	Mastacembelus_armatus
ENSAMXG00000024616	smg5	65	69.114	ENSMZEG00005016543	smg5	100	69.487	Maylandia_zebra
ENSAMXG00000024616	smg5	100	73.177	ENSMZEG00005015815	smg5	99	73.357	Maylandia_zebra
ENSAMXG00000024616	smg5	100	76.732	ENSMMOG00000017199	smg5	100	76.246	Mola_mola
ENSAMXG00000024616	smg5	77	32.832	ENSMODG00000004532	-	95	31.733	Monodelphis_domestica
ENSAMXG00000024616	smg5	74	35.509	ENSMODG00000004511	-	82	35.509	Monodelphis_domestica
ENSAMXG00000024616	smg5	69	35.849	ENSMODG00000004735	-	85	35.849	Monodelphis_domestica
ENSAMXG00000024616	smg5	76	33.416	ENSMODG00000010675	-	92	33.643	Monodelphis_domestica
ENSAMXG00000024616	smg5	100	77.176	ENSMALG00000010375	smg5	100	76.806	Monopterus_albus
ENSAMXG00000024616	smg5	99	62.976	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSAMXG00000024616	smg5	99	62.976	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSAMXG00000024616	smg5	99	62.976	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSAMXG00000024616	smg5	99	62.886	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSAMXG00000024616	smg5	94	61.278	ENSMPUG00000004546	SMG5	54	59.410	Mustela_putorius_furo
ENSAMXG00000024616	smg5	79	50.503	ENSNGAG00000012101	-	85	50.376	Nannospalax_galili
ENSAMXG00000024616	smg5	97	71.788	ENSNBRG00000004332	smg5	98	71.963	Neolamprologus_brichardi
ENSAMXG00000024616	smg5	100	78.508	ENSONIG00000008632	smg5	100	79.148	Oreochromis_niloticus
ENSAMXG00000024616	smg5	78	46.329	ENSOCUG00000023338	-	87	44.313	Oryctolagus_cuniculus
ENSAMXG00000024616	smg5	100	76.208	ENSORLG00000016239	smg5	100	76.093	Oryzias_latipes
ENSAMXG00000024616	smg5	100	75.961	ENSORLG00020013127	smg5	100	75.714	Oryzias_latipes_hni
ENSAMXG00000024616	smg5	100	75.871	ENSORLG00015019014	smg5	100	75.625	Oryzias_latipes_hsok
ENSAMXG00000024616	smg5	83	75.133	ENSOMEG00000021330	smg5	87	82.921	Oryzias_melastigma
ENSAMXG00000024616	smg5	87	51.807	ENSOARG00000011963	-	86	51.807	Ovis_aries
ENSAMXG00000024616	smg5	98	62.523	ENSPPRG00000011901	SMG5	52	59.259	Panthera_pardus
ENSAMXG00000024616	smg5	87	78.797	ENSPTRG00000049282	-	83	78.797	Pan_troglodytes
ENSAMXG00000024616	smg5	100	79.019	ENSPKIG00000009402	smg5	100	78.708	Paramormyrops_kingsleyae
ENSAMXG00000024616	smg5	100	72.137	ENSPMGG00000010465	smg5	100	71.223	Periophthalmus_magnuspinnatus
ENSAMXG00000024616	smg5	99	62.489	ENSPEMG00000001819	Smg5	99	61.996	Peromyscus_maniculatus_bairdii
ENSAMXG00000024616	smg5	86	64.090	ENSPMAG00000000410	smg5	91	64.090	Petromyzon_marinus
ENSAMXG00000024616	smg5	100	78.501	ENSPFOG00000010191	smg5	100	78.335	Poecilia_formosa
ENSAMXG00000024616	smg5	100	78.495	ENSPLAG00000009332	smg5	100	78.514	Poecilia_latipinna
ENSAMXG00000024616	smg5	100	78.591	ENSPMEG00000014105	smg5	100	78.514	Poecilia_mexicana
ENSAMXG00000024616	smg5	100	78.495	ENSPREG00000017713	smg5	100	78.603	Poecilia_reticulata
ENSAMXG00000024616	smg5	77	81.111	ENSPCAG00000008412	SMG5	51	81.111	Procavia_capensis
ENSAMXG00000024616	smg5	99	62.591	ENSPCOG00000004741	SMG5	51	59.341	Propithecus_coquereli
ENSAMXG00000024616	smg5	99	56.073	ENSPVAG00000016748	SMG5	92	65.721	Pteropus_vampyrus
ENSAMXG00000024616	smg5	100	78.395	ENSPNYG00000013397	smg5	100	78.799	Pundamilia_nyererei
ENSAMXG00000024616	smg5	100	91.257	ENSPNAG00000028363	smg5	100	92.350	Pygocentrus_nattereri
ENSAMXG00000024616	smg5	58	34.773	ENSSHAG00000000935	-	89	35.135	Sarcophilus_harrisii
ENSAMXG00000024616	smg5	72	41.966	ENSSHAG00000009572	-	81	41.966	Sarcophilus_harrisii
ENSAMXG00000024616	smg5	71	36.364	ENSSHAG00000000561	-	89	36.364	Sarcophilus_harrisii
ENSAMXG00000024616	smg5	100	79.047	ENSSFOG00015024175	smg5	100	78.591	Scleropages_formosus
ENSAMXG00000024616	smg5	100	79.022	ENSSMAG00000013059	smg5	100	79.359	Scophthalmus_maximus
ENSAMXG00000024616	smg5	100	78.464	ENSSDUG00000007122	smg5	100	79.204	Seriola_dumerili
ENSAMXG00000024616	smg5	100	79.008	ENSSLDG00000011418	smg5	100	79.396	Seriola_lalandi_dorsalis
ENSAMXG00000024616	smg5	85	69.784	ENSSARG00000012484	SMG5	76	69.784	Sorex_araneus
ENSAMXG00000024616	smg5	94	61.700	ENSSPUG00000002260	SMG5	100	60.728	Sphenodon_punctatus
ENSAMXG00000024616	smg5	100	77.924	ENSSPAG00000014266	smg5	100	79.222	Stegastes_partitus
ENSAMXG00000024616	smg5	99	49.041	ENSSSCG00000039308	-	91	56.501	Sus_scrofa
ENSAMXG00000024616	smg5	99	62.135	ENSSSCG00000006490	-	91	78.723	Sus_scrofa
ENSAMXG00000024616	smg5	99	64.522	ENSTGUG00000003748	-	50	61.243	Taeniopygia_guttata
ENSAMXG00000024616	smg5	100	74.182	ENSTRUG00000012580	smg5	100	74.581	Takifugu_rubripes
ENSAMXG00000024616	smg5	100	73.656	ENSTNIG00000010303	smg5	100	74.602	Tetraodon_nigroviridis
ENSAMXG00000024616	smg5	53	84.729	ENSTBEG00000002777	SMG5	58	84.729	Tupaia_belangeri
ENSAMXG00000024616	smg5	99	62.192	ENSUAMG00000013721	SMG5	51	58.425	Ursus_americanus
ENSAMXG00000024616	smg5	99	57.790	ENSUMAG00000018041	SMG5	95	73.522	Ursus_maritimus
ENSAMXG00000024616	smg5	92	71.287	ENSVPAG00000009446	SMG5	92	68.329	Vicugna_pacos
ENSAMXG00000024616	smg5	79	56.171	ENSXETG00000033791	SMG5	99	54.095	Xenopus_tropicalis
ENSAMXG00000024616	smg5	92	88.108	ENSXCOG00000004379	smg5	100	88.108	Xiphophorus_couchianus
ENSAMXG00000024616	smg5	100	78.226	ENSXMAG00000013499	smg5	100	78.424	Xiphophorus_maculatus