EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000025301 (Gene tree)
Gene ID: 103027130
Gene Symbol: oscp1a
Alias: oscp1|zgc:171454
Full Name: LSM10%2C U7 small nuclear RNA associated
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 363 bases
Position: chrAPWO02000066.1:209792-210154
Accession: 103027130
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000026007	LSM	PF01423.22	1.3e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000026027	-	363	XM_022666487	ENSAMXP00000026007	120 (aa)	XP_022522208	W5LSQ2

Gene Model

Click here to download ENSAMXG00000025301's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000025301's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000025301	oscp1a	98	66.102	ENSG00000181817	LSM10	96	66.102	Homo_sapiens
ENSAMXG00000025301	oscp1a	98	67.797	ENSAMEG00000019854	LSM10	96	67.797	Ailuropoda_melanoleuca
ENSAMXG00000025301	oscp1a	97	74.359	ENSACIG00000015420	oscp1a	77	74.359	Amphilophus_citrinellus
ENSAMXG00000025301	oscp1a	87	75.962	ENSAOCG00000015607	LSM10	81	75.962	Amphiprion_ocellaris
ENSAMXG00000025301	oscp1a	100	73.554	ENSAOCG00000015618	LSM10	100	73.554	Amphiprion_ocellaris
ENSAMXG00000025301	oscp1a	100	73.554	ENSAOCG00000014654	-	100	73.554	Amphiprion_ocellaris
ENSAMXG00000025301	oscp1a	100	73.554	ENSAPEG00000021845	-	100	73.554	Amphiprion_percula
ENSAMXG00000025301	oscp1a	87	75.962	ENSAPEG00000021851	LSM10	81	75.962	Amphiprion_percula
ENSAMXG00000025301	oscp1a	92	77.477	ENSATEG00000006310	oscp1a	82	77.477	Anabas_testudineus
ENSAMXG00000025301	oscp1a	98	61.864	ENSACAG00000001231	LSM10	96	61.864	Anolis_carolinensis
ENSAMXG00000025301	oscp1a	98	64.706	ENSANAG00000018759	-	97	64.706	Aotus_nancymaae
ENSAMXG00000025301	oscp1a	98	63.025	ENSANAG00000031489	-	98	63.025	Aotus_nancymaae
ENSAMXG00000025301	oscp1a	100	72.727	ENSACLG00000004728	oscp1a	98	72.727	Astatotilapia_calliptera
ENSAMXG00000025301	oscp1a	98	66.387	ENSBTAG00000024096	LSM10	98	66.387	Bos_taurus
ENSAMXG00000025301	oscp1a	98	64.706	ENSCJAG00000044880	LSM10	97	64.706	Callithrix_jacchus
ENSAMXG00000025301	oscp1a	98	68.644	ENSCAFG00000003382	LSM10	96	68.644	Canis_familiaris
ENSAMXG00000025301	oscp1a	98	68.644	ENSCAFG00020008920	LSM10	96	68.644	Canis_lupus_dingo
ENSAMXG00000025301	oscp1a	98	66.387	ENSCHIG00000009398	LSM10	98	66.387	Capra_hircus
ENSAMXG00000025301	oscp1a	98	69.492	ENSCAPG00000012567	LSM10	96	69.492	Cavia_aperea
ENSAMXG00000025301	oscp1a	98	69.492	ENSCPOG00000039302	LSM10	96	69.492	Cavia_porcellus
ENSAMXG00000025301	oscp1a	98	63.025	ENSCCAG00000008378	-	97	63.025	Cebus_capucinus
ENSAMXG00000025301	oscp1a	98	64.706	ENSCCAG00000018913	-	97	64.706	Cebus_capucinus
ENSAMXG00000025301	oscp1a	98	66.102	ENSCATG00000006589	LSM10	96	66.102	Cercocebus_atys
ENSAMXG00000025301	oscp1a	98	68.644	ENSCLAG00000008633	LSM10	96	68.644	Chinchilla_lanigera
ENSAMXG00000025301	oscp1a	98	66.102	ENSCSAG00000000134	LSM10	96	66.102	Chlorocebus_sabaeus
ENSAMXG00000025301	oscp1a	98	65.000	ENSCHOG00000008615	LSM10	96	65.000	Choloepus_hoffmanni
ENSAMXG00000025301	oscp1a	84	31.683	ENSCSAVG00000001896	-	86	31.683	Ciona_savignyi
ENSAMXG00000025301	oscp1a	98	66.102	ENSCANG00000019928	LSM10	96	66.102	Colobus_angolensis_palliatus
ENSAMXG00000025301	oscp1a	98	68.644	ENSCGRG00001004317	-	97	68.644	Cricetulus_griseus_chok1gshd
ENSAMXG00000025301	oscp1a	97	61.345	ENSCGRG00001022673	-	96	61.345	Cricetulus_griseus_chok1gshd
ENSAMXG00000025301	oscp1a	97	61.345	ENSCGRG00000015514	-	96	61.345	Cricetulus_griseus_crigri
ENSAMXG00000025301	oscp1a	98	68.644	ENSCGRG00000014935	-	97	68.644	Cricetulus_griseus_crigri
ENSAMXG00000025301	oscp1a	98	74.790	ENSCSEG00000010374	oscp1a	80	74.790	Cynoglossus_semilaevis
ENSAMXG00000025301	oscp1a	95	73.684	ENSCVAG00000001536	oscp1a	87	73.684	Cyprinodon_variegatus
ENSAMXG00000025301	oscp1a	69	83.133	ENSDARG00000109563	CABZ01074453.1	96	83.133	Danio_rerio
ENSAMXG00000025301	oscp1a	98	79.487	ENSDARG00000101222	oscp1a	98	79.487	Danio_rerio
ENSAMXG00000025301	oscp1a	98	66.949	ENSDNOG00000036662	LSM10	96	66.949	Dasypus_novemcinctus
ENSAMXG00000025301	oscp1a	98	71.186	ENSDORG00000007579	Lsm10	96	71.186	Dipodomys_ordii
ENSAMXG00000025301	oscp1a	98	67.521	ENSETEG00000005703	LSM10	96	67.521	Echinops_telfairi
ENSAMXG00000025301	oscp1a	100	50.820	ENSEBUG00000001312	oscp1a	100	50.820	Eptatretus_burgeri
ENSAMXG00000025301	oscp1a	98	68.644	ENSEASG00005012194	LSM10	96	68.644	Equus_asinus_asinus
ENSAMXG00000025301	oscp1a	98	68.644	ENSECAG00000005071	LSM10	96	68.644	Equus_caballus
ENSAMXG00000025301	oscp1a	98	68.644	ENSEEUG00000012032	LSM10	96	68.644	Erinaceus_europaeus
ENSAMXG00000025301	oscp1a	96	77.586	ENSELUG00000007452	oscp1a	95	77.586	Esox_lucius
ENSAMXG00000025301	oscp1a	98	63.559	ENSFALG00000000851	LSM10	96	63.559	Ficedula_albicollis
ENSAMXG00000025301	oscp1a	98	67.797	ENSFDAG00000021056	LSM10	96	67.797	Fukomys_damarensis
ENSAMXG00000025301	oscp1a	93	72.807	ENSFHEG00000001058	oscp1a	98	72.807	Fundulus_heteroclitus
ENSAMXG00000025301	oscp1a	94	75.439	ENSGMOG00000019832	oscp1a	96	75.439	Gadus_morhua
ENSAMXG00000025301	oscp1a	98	67.797	ENSGALG00000002127	LSM10	96	67.797	Gallus_gallus
ENSAMXG00000025301	oscp1a	96	62.185	ENSGAFG00000016445	oscp1a	97	62.185	Gambusia_affinis
ENSAMXG00000025301	oscp1a	97	76.068	ENSGACG00000002329	oscp1a	96	76.068	Gasterosteus_aculeatus
ENSAMXG00000025301	oscp1a	94	69.298	ENSGAGG00000024848	LSM10	93	69.298	Gopherus_agassizii
ENSAMXG00000025301	oscp1a	98	65.254	ENSGGOG00000003556	LSM10	96	65.254	Gorilla_gorilla
ENSAMXG00000025301	oscp1a	100	72.727	ENSHBUG00000001722	oscp1a	98	72.727	Haplochromis_burtoni
ENSAMXG00000025301	oscp1a	98	67.797	ENSHGLG00000011625	LSM10	96	67.797	Heterocephalus_glaber_female
ENSAMXG00000025301	oscp1a	98	67.797	ENSHGLG00100001769	LSM10	96	67.797	Heterocephalus_glaber_male
ENSAMXG00000025301	oscp1a	95	80.702	ENSIPUG00000005808	oscp1a	99	80.702	Ictalurus_punctatus
ENSAMXG00000025301	oscp1a	98	68.644	ENSSTOG00000000606	LSM10	96	68.644	Ictidomys_tridecemlineatus
ENSAMXG00000025301	oscp1a	100	74.380	ENSKMAG00000012143	oscp1a	100	74.380	Kryptolebias_marmoratus
ENSAMXG00000025301	oscp1a	98	72.881	ENSLBEG00000017764	oscp1a	97	72.881	Labrus_bergylta
ENSAMXG00000025301	oscp1a	96	62.931	ENSLACG00000015904	LSM10	89	62.931	Latimeria_chalumnae
ENSAMXG00000025301	oscp1a	99	69.167	ENSLOCG00000018277	oscp1a	98	69.167	Lepisosteus_oculatus
ENSAMXG00000025301	oscp1a	98	66.667	ENSLAFG00000009600	LSM10	96	66.667	Loxodonta_africana
ENSAMXG00000025301	oscp1a	98	66.102	ENSMFAG00000009115	LSM10	96	66.102	Macaca_fascicularis
ENSAMXG00000025301	oscp1a	98	66.102	ENSMMUG00000017338	LSM10	96	66.102	Macaca_mulatta
ENSAMXG00000025301	oscp1a	98	66.102	ENSMNEG00000020023	LSM10	96	66.102	Macaca_nemestrina
ENSAMXG00000025301	oscp1a	98	66.102	ENSMLEG00000025150	LSM10	96	66.102	Mandrillus_leucophaeus
ENSAMXG00000025301	oscp1a	97	72.650	ENSMAMG00000004427	oscp1a	96	72.650	Mastacembelus_armatus
ENSAMXG00000025301	oscp1a	100	72.727	ENSMZEG00005026307	oscp1a	98	72.727	Maylandia_zebra
ENSAMXG00000025301	oscp1a	98	66.949	ENSMGAG00000015707	LSM10	96	66.949	Meleagris_gallopavo
ENSAMXG00000025301	oscp1a	98	67.797	ENSMAUG00000016624	Lsm10	97	67.797	Mesocricetus_auratus
ENSAMXG00000025301	oscp1a	98	66.387	ENSMOCG00000021943	Lsm10	98	66.387	Microtus_ochrogaster
ENSAMXG00000025301	oscp1a	92	79.279	ENSMMOG00000013597	oscp1a	83	79.279	Mola_mola
ENSAMXG00000025301	oscp1a	98	67.797	ENSMODG00000023328	LSM10	96	67.797	Monodelphis_domestica
ENSAMXG00000025301	oscp1a	58	72.464	ENSMALG00000012661	oscp1a	54	72.464	Monopterus_albus
ENSAMXG00000025301	oscp1a	98	67.227	MGP_CAROLIEiJ_G0026467	Lsm10	97	71.111	Mus_caroli
ENSAMXG00000025301	oscp1a	98	67.227	ENSMUSG00000050188	Lsm10	97	71.111	Mus_musculus
ENSAMXG00000025301	oscp1a	98	67.227	MGP_PahariEiJ_G0028798	Lsm10	97	71.111	Mus_pahari
ENSAMXG00000025301	oscp1a	98	67.227	MGP_SPRETEiJ_G0027446	Lsm10	97	71.111	Mus_spretus
ENSAMXG00000025301	oscp1a	98	68.644	ENSMPUG00000018593	LSM10	96	68.644	Mustela_putorius_furo
ENSAMXG00000025301	oscp1a	98	67.797	ENSMLUG00000023895	LSM10	96	67.797	Myotis_lucifugus
ENSAMXG00000025301	oscp1a	98	66.387	ENSNGAG00000015011	Lsm10	97	66.387	Nannospalax_galili
ENSAMXG00000025301	oscp1a	97	75.214	ENSNBRG00000014306	oscp1a	95	75.214	Neolamprologus_brichardi
ENSAMXG00000025301	oscp1a	98	66.949	ENSNLEG00000033754	LSM10	96	66.949	Nomascus_leucogenys
ENSAMXG00000025301	oscp1a	98	67.797	ENSMEUG00000006313	LSM10	96	67.797	Notamacropus_eugenii
ENSAMXG00000025301	oscp1a	98	65.254	ENSOPRG00000001699	LSM10	96	65.254	Ochotona_princeps
ENSAMXG00000025301	oscp1a	98	68.644	ENSODEG00000019161	LSM10	96	68.644	Octodon_degus
ENSAMXG00000025301	oscp1a	97	75.214	ENSONIG00000020904	oscp1a	96	75.214	Oreochromis_niloticus
ENSAMXG00000025301	oscp1a	98	67.797	ENSOANG00000002066	LSM10	96	67.797	Ornithorhynchus_anatinus
ENSAMXG00000025301	oscp1a	98	64.407	ENSOCUG00000005333	LSM10	96	64.407	Oryctolagus_cuniculus
ENSAMXG00000025301	oscp1a	100	71.074	ENSORLG00000009504	oscp1a	100	71.074	Oryzias_latipes
ENSAMXG00000025301	oscp1a	100	71.074	ENSORLG00020016201	oscp1a	100	71.074	Oryzias_latipes_hni
ENSAMXG00000025301	oscp1a	100	70.833	ENSORLG00015007794	oscp1a	100	70.833	Oryzias_latipes_hsok
ENSAMXG00000025301	oscp1a	98	68.644	ENSOGAG00000002653	LSM10	96	68.644	Otolemur_garnettii
ENSAMXG00000025301	oscp1a	98	66.387	ENSOARG00000009596	LSM10	98	66.387	Ovis_aries
ENSAMXG00000025301	oscp1a	98	66.102	ENSPPAG00000023465	LSM10	96	66.102	Pan_paniscus
ENSAMXG00000025301	oscp1a	98	68.644	ENSPPRG00000014619	LSM10	96	68.644	Panthera_pardus
ENSAMXG00000025301	oscp1a	98	68.644	ENSPTIG00000004613	LSM10	96	68.644	Panthera_tigris_altaica
ENSAMXG00000025301	oscp1a	98	66.102	ENSPTRG00000000539	LSM10	96	66.102	Pan_troglodytes
ENSAMXG00000025301	oscp1a	98	66.102	ENSPANG00000023172	LSM10	96	66.102	Papio_anubis
ENSAMXG00000025301	oscp1a	95	75.652	ENSPKIG00000003728	oscp1a	93	75.652	Paramormyrops_kingsleyae
ENSAMXG00000025301	oscp1a	98	66.949	ENSPSIG00000000590	LSM10	96	66.949	Pelodiscus_sinensis
ENSAMXG00000025301	oscp1a	61	76.712	ENSPMGG00000015718	oscp1a	95	76.712	Periophthalmus_magnuspinnatus
ENSAMXG00000025301	oscp1a	99	63.866	ENSPCIG00000014865	LSM10	85	63.866	Phascolarctos_cinereus
ENSAMXG00000025301	oscp1a	97	70.085	ENSPFOG00000020490	oscp1a	99	70.085	Poecilia_formosa
ENSAMXG00000025301	oscp1a	99	69.167	ENSPLAG00000016537	oscp1a	92	69.167	Poecilia_latipinna
ENSAMXG00000025301	oscp1a	93	69.027	ENSPMEG00000000174	oscp1a	98	69.027	Poecilia_mexicana
ENSAMXG00000025301	oscp1a	99	68.333	ENSPREG00000009899	oscp1a	92	68.333	Poecilia_reticulata
ENSAMXG00000025301	oscp1a	98	66.102	ENSPPYG00000001539	LSM10	96	66.102	Pongo_abelii
ENSAMXG00000025301	oscp1a	98	65.254	ENSPCAG00000002520	LSM10	98	65.254	Procavia_capensis
ENSAMXG00000025301	oscp1a	98	68.644	ENSPVAG00000008644	LSM10	96	68.644	Pteropus_vampyrus
ENSAMXG00000025301	oscp1a	100	72.727	ENSPNYG00000003138	oscp1a	98	72.727	Pundamilia_nyererei
ENSAMXG00000025301	oscp1a	97	84.483	ENSPNAG00000028829	oscp1a	97	84.483	Pygocentrus_nattereri
ENSAMXG00000025301	oscp1a	98	66.387	ENSRNOG00000025716	Lsm10	98	66.387	Rattus_norvegicus
ENSAMXG00000025301	oscp1a	98	66.102	ENSRBIG00000001561	LSM10	96	66.102	Rhinopithecus_bieti
ENSAMXG00000025301	oscp1a	98	66.102	ENSRROG00000011414	LSM10	96	66.102	Rhinopithecus_roxellana
ENSAMXG00000025301	oscp1a	98	64.706	ENSSBOG00000036413	-	97	64.706	Saimiri_boliviensis_boliviensis
ENSAMXG00000025301	oscp1a	98	67.797	ENSSHAG00000018056	LSM10	96	67.797	Sarcophilus_harrisii
ENSAMXG00000025301	oscp1a	96	70.690	ENSSFOG00015019954	lsm10	95	70.690	Scleropages_formosus
ENSAMXG00000025301	oscp1a	97	78.632	ENSSMAG00000001297	oscp1a	100	78.632	Scophthalmus_maximus
ENSAMXG00000025301	oscp1a	97	74.359	ENSSDUG00000007090	oscp1a	95	74.359	Seriola_dumerili
ENSAMXG00000025301	oscp1a	100	73.554	ENSSLDG00000000800	oscp1a	100	73.554	Seriola_lalandi_dorsalis
ENSAMXG00000025301	oscp1a	88	70.476	ENSSARG00000004211	LSM10	96	68.333	Sorex_araneus
ENSAMXG00000025301	oscp1a	100	73.554	ENSSPAG00000009229	oscp1a	100	73.554	Stegastes_partitus
ENSAMXG00000025301	oscp1a	98	65.254	ENSSSCG00000038916	LSM10	97	65.254	Sus_scrofa
ENSAMXG00000025301	oscp1a	98	64.407	ENSTGUG00000001600	-	97	64.407	Taeniopygia_guttata
ENSAMXG00000025301	oscp1a	98	64.407	ENSTGUG00000001602	-	97	64.407	Taeniopygia_guttata
ENSAMXG00000025301	oscp1a	96	74.138	ENSTRUG00000010531	oscp1a	94	74.138	Takifugu_rubripes
ENSAMXG00000025301	oscp1a	98	65.546	ENSTBEG00000016674	LSM10	97	65.546	Tupaia_belangeri
ENSAMXG00000025301	oscp1a	98	67.797	ENSUAMG00000020265	LSM10	96	67.797	Ursus_americanus
ENSAMXG00000025301	oscp1a	98	67.797	ENSUMAG00000001438	LSM10	54	67.797	Ursus_maritimus
ENSAMXG00000025301	oscp1a	98	68.644	ENSVVUG00000023209	LSM10	96	68.644	Vulpes_vulpes
ENSAMXG00000025301	oscp1a	98	64.957	ENSXETG00000027631	lsm10	96	64.957	Xenopus_tropicalis
ENSAMXG00000025301	oscp1a	98	68.644	ENSXCOG00000018776	oscp1a	74	68.644	Xiphophorus_couchianus
ENSAMXG00000025301	oscp1a	92	68.468	ENSXMAG00000019963	oscp1a	89	68.468	Xiphophorus_maculatus