EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000025717 (Gene tree)
Gene ID: 103030689
Gene Symbol: cth1
Alias: cb266|fa18c01|wu:fa18c01|zfcth1
Full Name: mRNA decay activator protein ZFP36L2-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 2381 bases
Position: chr16:25207910-25210290
Accession: 103030689
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000026422	zf-CCCH	PF00642.24	1.7e-32	1	4
ENSAMXP00000026422	zf-CCCH	PF00642.24	1.7e-32	2	4
ENSAMXP00000026422	zf-CCCH	PF00642.24	1.7e-32	3	4
ENSAMXP00000026422	zf-CCCH	PF00642.24	1.7e-32	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000026443	-	1495	XM_007255701	ENSAMXP00000026422	313 (aa)	XP_007255763	W5LTG0

Gene Model

Click here to download ENSAMXG00000025717's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex04114	Oocyte meiosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000025717's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000025717	cth1	91	56.122	ENSAPOG00000012552	cth1	99	56.169	Acanthochromis_polyacanthus
ENSAMXG00000025717	cth1	58	70.312	ENSACIG00000016026	cth1	96	54.601	Amphilophus_citrinellus
ENSAMXG00000025717	cth1	92	55.298	ENSAOCG00000001644	cth1	96	57.009	Amphiprion_ocellaris
ENSAMXG00000025717	cth1	92	55.298	ENSAPEG00000008930	cth1	96	57.009	Amphiprion_percula
ENSAMXG00000025717	cth1	92	54.037	ENSATEG00000002281	cth1	94	56.156	Anabas_testudineus
ENSAMXG00000025717	cth1	67	63.594	ENSACLG00000015353	cth1	100	55.519	Astatotilapia_calliptera
ENSAMXG00000025717	cth1	92	55.844	ENSCSEG00000014617	cth1	98	54.955	Cynoglossus_semilaevis
ENSAMXG00000025717	cth1	92	53.103	ENSCVAG00000001680	cth1	62	51.613	Cyprinodon_variegatus
ENSAMXG00000025717	cth1	92	75.258	ENSDARG00000057328	cth1	96	75.241	Danio_rerio
ENSAMXG00000025717	cth1	98	67.500	ENSELUG00000012738	cth1	95	65.528	Esox_lucius
ENSAMXG00000025717	cth1	92	50.993	ENSFHEG00000022665	cth1	98	50.769	Fundulus_heteroclitus
ENSAMXG00000025717	cth1	91	54.209	ENSGMOG00000007360	cth1	95	55.414	Gadus_morhua
ENSAMXG00000025717	cth1	97	52.997	ENSGAFG00000019288	cth1	96	52.665	Gambusia_affinis
ENSAMXG00000025717	cth1	99	56.135	ENSGACG00000000802	cth1	98	55.215	Gasterosteus_aculeatus
ENSAMXG00000025717	cth1	97	56.129	ENSHBUG00000014400	cth1	96	56.230	Haplochromis_burtoni
ENSAMXG00000025717	cth1	97	48.734	ENSHCOG00000010276	cth1	95	48.734	Hippocampus_comes
ENSAMXG00000025717	cth1	98	84.740	ENSIPUG00000018040	cth1	96	82.792	Ictalurus_punctatus
ENSAMXG00000025717	cth1	92	53.667	ENSKMAG00000005944	cth1	96	54.545	Kryptolebias_marmoratus
ENSAMXG00000025717	cth1	92	59.136	ENSLBEG00000019253	cth1	97	58.104	Labrus_bergylta
ENSAMXG00000025717	cth1	64	58.128	ENSLOCG00000002047	cth1	98	58.621	Lepisosteus_oculatus
ENSAMXG00000025717	cth1	75	57.430	ENSMAMG00000001525	cth1	97	46.027	Mastacembelus_armatus
ENSAMXG00000025717	cth1	68	63.964	ENSMZEG00005022335	cth1	96	55.911	Maylandia_zebra
ENSAMXG00000025717	cth1	87	55.674	ENSMMOG00000020518	cth1	96	54.667	Mola_mola
ENSAMXG00000025717	cth1	98	46.950	ENSMALG00000020738	cth1	97	44.959	Monopterus_albus
ENSAMXG00000025717	cth1	58	68.681	ENSNBRG00000022789	cth1	83	57.455	Neolamprologus_brichardi
ENSAMXG00000025717	cth1	68	64.000	ENSONIG00000021318	cth1	98	55.077	Oreochromis_niloticus
ENSAMXG00000025717	cth1	99	50.309	ENSORLG00000022847	cth1	96	51.887	Oryzias_latipes
ENSAMXG00000025717	cth1	99	49.387	ENSORLG00020011979	cth1	96	51.572	Oryzias_latipes_hni
ENSAMXG00000025717	cth1	99	50.309	ENSORLG00015013084	cth1	96	51.887	Oryzias_latipes_hsok
ENSAMXG00000025717	cth1	98	52.104	ENSOMEG00000005809	cth1	81	52.104	Oryzias_melastigma
ENSAMXG00000025717	cth1	96	61.661	ENSPKIG00000015883	cth1	94	61.022	Paramormyrops_kingsleyae
ENSAMXG00000025717	cth1	91	54.747	ENSPMGG00000004275	cth1	96	56.698	Periophthalmus_magnuspinnatus
ENSAMXG00000025717	cth1	98	54.313	ENSPFOG00000013583	cth1	90	53.674	Poecilia_formosa
ENSAMXG00000025717	cth1	96	55.150	ENSPLAG00000018158	cth1	87	53.443	Poecilia_latipinna
ENSAMXG00000025717	cth1	98	54.487	ENSPMEG00000005744	cth1	96	52.351	Poecilia_mexicana
ENSAMXG00000025717	cth1	97	55.921	ENSPREG00000004099	cth1	93	54.575	Poecilia_reticulata
ENSAMXG00000025717	cth1	89	58.273	ENSPNYG00000016705	cth1	88	57.651	Pundamilia_nyererei
ENSAMXG00000025717	cth1	98	87.987	ENSPNAG00000013147	cth1	96	87.987	Pygocentrus_nattereri
ENSAMXG00000025717	cth1	95	57.807	ENSSFOG00015017190	cth1	93	58.086	Scleropages_formosus
ENSAMXG00000025717	cth1	92	57.705	ENSSMAG00000007977	cth1	97	57.538	Scophthalmus_maximus
ENSAMXG00000025717	cth1	92	58.576	ENSSDUG00000004321	cth1	97	57.798	Seriola_dumerili
ENSAMXG00000025717	cth1	92	58.065	ENSSLDG00000012760	cth1	97	58.537	Seriola_lalandi_dorsalis
ENSAMXG00000025717	cth1	92	57.419	ENSSLDG00000010023	-	97	57.927	Seriola_lalandi_dorsalis
ENSAMXG00000025717	cth1	92	57.419	ENSSLDG00000004516	-	97	57.927	Seriola_lalandi_dorsalis
ENSAMXG00000025717	cth1	79	59.289	ENSSPAG00000018659	cth1	97	56.347	Stegastes_partitus
ENSAMXG00000025717	cth1	98	54.688	ENSTRUG00000012770	cth1	97	52.795	Takifugu_rubripes
ENSAMXG00000025717	cth1	98	53.583	ENSTNIG00000000740	cth1	97	52.322	Tetraodon_nigroviridis
ENSAMXG00000025717	cth1	87	53.506	ENSXCOG00000003710	cth1	90	52.381	Xiphophorus_couchianus
ENSAMXG00000025717	cth1	98	53.292	ENSXMAG00000023885	cth1	96	51.875	Xiphophorus_maculatus