EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000029240 (Gene tree)
Gene ID: 103024027
Gene Symbol: -
Alias: -
Full Name: tRNA selenocysteine 1 associated protein 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 5703 bases
Position: chr10:19805281-19810983
Accession: 103024027
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000046004	RRM_1	PF00076.22	4.6e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000042514	-	3824	XM_007249594	ENSAMXP00000046004	197 (aa)	XP_007249656	UPI000BBDBFEF

Gene Model

Click here to download ENSAMXG00000029240's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000029240's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000029240	-	97	56.818	ENSAMXG00000001805	trnau1apb	93	56.818
ENSAMXG00000029240	-	94	68.132	ENSAMXG00000013750	trnau1apa	88	68.132

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000029240	-	98	65.556	ENSG00000180098	TRNAU1AP	95	65.556	Homo_sapiens
ENSAMXG00000029240	-	95	71.591	ENSAPOG00000007148	TRNAU1AP	92	71.591	Acanthochromis_polyacanthus
ENSAMXG00000029240	-	98	65.556	ENSAMEG00000011367	TRNAU1AP	95	65.556	Ailuropoda_melanoleuca
ENSAMXG00000029240	-	97	71.591	ENSACIG00000004161	trnau1apa	92	71.591	Amphilophus_citrinellus
ENSAMXG00000029240	-	95	71.591	ENSAOCG00000008056	trnau1apa	92	71.591	Amphiprion_ocellaris
ENSAMXG00000029240	-	95	71.591	ENSAPEG00000008868	trnau1apa	92	71.591	Amphiprion_percula
ENSAMXG00000029240	-	95	69.892	ENSATEG00000012140	trnau1apa	92	69.892	Anabas_testudineus
ENSAMXG00000029240	-	93	66.667	ENSAPLG00000002606	TRNAU1AP	96	66.667	Anas_platyrhynchos
ENSAMXG00000029240	-	95	66.292	ENSACAG00000003995	-	89	64.444	Anolis_carolinensis
ENSAMXG00000029240	-	98	65.556	ENSANAG00000018976	TRNAU1AP	95	65.556	Aotus_nancymaae
ENSAMXG00000029240	-	97	71.591	ENSACLG00000018515	trnau1apa	94	71.591	Astatotilapia_calliptera
ENSAMXG00000029240	-	98	65.556	ENSBTAG00000010393	TRNAU1AP	95	65.556	Bos_taurus
ENSAMXG00000029240	-	98	65.556	ENSCJAG00000009717	TRNAU1AP	95	65.556	Callithrix_jacchus
ENSAMXG00000029240	-	96	65.556	ENSCAFG00000011735	TRNAU1AP	94	65.556	Canis_familiaris
ENSAMXG00000029240	-	96	65.556	ENSCAFG00020023584	TRNAU1AP	94	65.556	Canis_lupus_dingo
ENSAMXG00000029240	-	98	65.556	ENSCHIG00000023215	TRNAU1AP	95	65.556	Capra_hircus
ENSAMXG00000029240	-	98	65.556	ENSTSYG00000003506	TRNAU1AP	95	65.556	Carlito_syrichta
ENSAMXG00000029240	-	96	65.556	ENSCPOG00000001925	TRNAU1AP	94	65.556	Cavia_porcellus
ENSAMXG00000029240	-	98	65.556	ENSCCAG00000037506	TRNAU1AP	95	65.556	Cebus_capucinus
ENSAMXG00000029240	-	98	65.556	ENSCATG00000044617	TRNAU1AP	95	65.556	Cercocebus_atys
ENSAMXG00000029240	-	96	65.556	ENSCLAG00000008223	TRNAU1AP	94	65.556	Chinchilla_lanigera
ENSAMXG00000029240	-	98	65.556	ENSCSAG00000001014	TRNAU1AP	95	65.556	Chlorocebus_sabaeus
ENSAMXG00000029240	-	97	67.089	ENSCPBG00000000121	TRNAU1AP	96	67.089	Chrysemys_picta_bellii
ENSAMXG00000029240	-	98	34.496	ENSCANG00000041949	TRNAU1AP	95	43.333	Colobus_angolensis_palliatus
ENSAMXG00000029240	-	98	65.556	ENSCGRG00001004713	Trnau1ap	95	65.556	Cricetulus_griseus_chok1gshd
ENSAMXG00000029240	-	98	65.556	ENSCGRG00000014532	Trnau1ap	95	65.556	Cricetulus_griseus_crigri
ENSAMXG00000029240	-	100	71.591	ENSCSEG00000006663	trnau1apa	95	68.478	Cynoglossus_semilaevis
ENSAMXG00000029240	-	97	71.591	ENSCVAG00000018069	trnau1apa	93	71.591	Cyprinodon_variegatus
ENSAMXG00000029240	-	98	65.556	ENSDNOG00000033009	TRNAU1AP	95	65.556	Dasypus_novemcinctus
ENSAMXG00000029240	-	95	63.636	ENSDORG00000006349	Trnau1ap	94	65.556	Dipodomys_ordii
ENSAMXG00000029240	-	95	64.583	ENSETEG00000012594	TRNAU1AP	93	64.583	Echinops_telfairi
ENSAMXG00000029240	-	98	65.556	ENSEASG00005010062	TRNAU1AP	95	65.556	Equus_asinus_asinus
ENSAMXG00000029240	-	98	65.556	ENSECAG00000012980	TRNAU1AP	95	65.556	Equus_caballus
ENSAMXG00000029240	-	98	62.376	ENSELUG00000022790	-	96	67.347	Esox_lucius
ENSAMXG00000029240	-	98	76.667	ENSELUG00000017686	trnau1apa	93	76.667	Esox_lucius
ENSAMXG00000029240	-	98	65.556	ENSFCAG00000013401	TRNAU1AP	95	65.556	Felis_catus
ENSAMXG00000029240	-	95	67.089	ENSFALG00000001371	TRNAU1AP	95	67.089	Ficedula_albicollis
ENSAMXG00000029240	-	96	65.556	ENSFDAG00000018599	TRNAU1AP	94	65.556	Fukomys_damarensis
ENSAMXG00000029240	-	71	70.968	ENSFHEG00000018232	trnau1apa	85	70.968	Fundulus_heteroclitus
ENSAMXG00000029240	-	95	74.324	ENSGMOG00000016508	trnau1apa	85	74.324	Gadus_morhua
ENSAMXG00000029240	-	96	67.778	ENSGALG00000001310	-	94	67.778	Gallus_gallus
ENSAMXG00000029240	-	95	70.455	ENSGACG00000001443	trnau1apa	91	70.455	Gasterosteus_aculeatus
ENSAMXG00000029240	-	97	67.089	ENSGAGG00000004940	TRNAU1AP	96	67.089	Gopherus_agassizii
ENSAMXG00000029240	-	98	65.556	ENSGGOG00000003511	TRNAU1AP	95	65.556	Gorilla_gorilla
ENSAMXG00000029240	-	97	69.892	ENSHBUG00000002510	trnau1apa	94	69.892	Haplochromis_burtoni
ENSAMXG00000029240	-	96	65.556	ENSHGLG00000010380	TRNAU1AP	94	65.556	Heterocephalus_glaber_female
ENSAMXG00000029240	-	96	57.778	ENSHGLG00100012699	TRNAU1AP	94	57.778	Heterocephalus_glaber_male
ENSAMXG00000029240	-	97	66.667	ENSHCOG00000014770	trnau1apa	93	66.667	Hippocampus_comes
ENSAMXG00000029240	-	98	65.556	ENSSTOG00000000079	TRNAU1AP	95	65.556	Ictidomys_tridecemlineatus
ENSAMXG00000029240	-	98	65.556	ENSJJAG00000010128	Trnau1ap	95	65.556	Jaculus_jaculus
ENSAMXG00000029240	-	95	69.318	ENSKMAG00000001230	trnau1apa	92	69.318	Kryptolebias_marmoratus
ENSAMXG00000029240	-	95	70.968	ENSLBEG00000011683	trnau1apa	92	70.968	Labrus_bergylta
ENSAMXG00000029240	-	97	53.846	ENSLACG00000005541	TRNAU1AP	94	53.846	Latimeria_chalumnae
ENSAMXG00000029240	-	97	69.231	ENSLOCG00000004041	trnau1apa	95	69.231	Lepisosteus_oculatus
ENSAMXG00000029240	-	98	66.667	ENSLAFG00000007628	TRNAU1AP	95	66.667	Loxodonta_africana
ENSAMXG00000029240	-	98	65.556	ENSMFAG00000043751	TRNAU1AP	95	65.556	Macaca_fascicularis
ENSAMXG00000029240	-	98	65.556	ENSMMUG00000006561	TRNAU1AP	95	65.556	Macaca_mulatta
ENSAMXG00000029240	-	98	65.556	ENSMNEG00000044201	TRNAU1AP	95	65.556	Macaca_nemestrina
ENSAMXG00000029240	-	98	65.556	ENSMLEG00000015649	TRNAU1AP	95	65.556	Mandrillus_leucophaeus
ENSAMXG00000029240	-	97	71.591	ENSMAMG00000001247	trnau1apa	94	71.591	Mastacembelus_armatus
ENSAMXG00000029240	-	97	71.591	ENSMZEG00005017722	trnau1apa	94	71.591	Maylandia_zebra
ENSAMXG00000029240	-	95	68.675	ENSMGAG00000002105	TRNAU1AP	95	68.675	Meleagris_gallopavo
ENSAMXG00000029240	-	98	65.556	ENSMICG00000008386	TRNAU1AP	95	65.556	Microcebus_murinus
ENSAMXG00000029240	-	98	65.556	ENSMOCG00000011189	Trnau1ap	95	65.556	Microtus_ochrogaster
ENSAMXG00000029240	-	100	65.060	ENSMMOG00000012107	trnau1apa	95	65.060	Mola_mola
ENSAMXG00000029240	-	96	65.556	ENSMODG00000010927	TRNAU1AP	94	65.556	Monodelphis_domestica
ENSAMXG00000029240	-	95	72.973	ENSMALG00000016778	trnau1apa	92	71.591	Monopterus_albus
ENSAMXG00000029240	-	96	65.556	MGP_CAROLIEiJ_G0026563	Trnau1ap	95	65.556	Mus_caroli
ENSAMXG00000029240	-	96	65.556	ENSMUSG00000028898	Trnau1ap	95	65.556	Mus_musculus
ENSAMXG00000029240	-	98	65.556	MGP_PahariEiJ_G0028896	Trnau1ap	95	65.556	Mus_pahari
ENSAMXG00000029240	-	96	65.556	MGP_SPRETEiJ_G0027544	Trnau1ap	95	65.556	Mus_spretus
ENSAMXG00000029240	-	98	65.556	ENSMPUG00000015511	TRNAU1AP	95	65.556	Mustela_putorius_furo
ENSAMXG00000029240	-	98	65.556	ENSMLUG00000012586	TRNAU1AP	95	65.556	Myotis_lucifugus
ENSAMXG00000029240	-	98	65.556	ENSNGAG00000015881	Trnau1ap	95	65.556	Nannospalax_galili
ENSAMXG00000029240	-	97	66.216	ENSNBRG00000001758	trnau1apa	92	63.636	Neolamprologus_brichardi
ENSAMXG00000029240	-	98	65.556	ENSNLEG00000009822	TRNAU1AP	95	65.556	Nomascus_leucogenys
ENSAMXG00000029240	-	95	66.265	ENSMEUG00000006117	TRNAU1AP	95	66.265	Notamacropus_eugenii
ENSAMXG00000029240	-	83	62.222	ENSOPRG00000007084	-	62	62.222	Ochotona_princeps
ENSAMXG00000029240	-	96	65.556	ENSODEG00000002970	TRNAU1AP	94	65.556	Octodon_degus
ENSAMXG00000029240	-	79	70.000	ENSONIG00000004715	trnau1apa	95	70.000	Oreochromis_niloticus
ENSAMXG00000029240	-	95	57.647	ENSOANG00000005325	-	81	57.647	Ornithorhynchus_anatinus
ENSAMXG00000029240	-	98	64.444	ENSOCUG00000011704	-	95	64.444	Oryctolagus_cuniculus
ENSAMXG00000029240	-	96	53.333	ENSOCUG00000002353	-	94	53.333	Oryctolagus_cuniculus
ENSAMXG00000029240	-	97	68.889	ENSORLG00000010428	trnau1apa	94	68.889	Oryzias_latipes
ENSAMXG00000029240	-	97	68.889	ENSORLG00020000926	trnau1ap	94	68.889	Oryzias_latipes_hni
ENSAMXG00000029240	-	97	68.889	ENSORLG00015009858	trnau1ap	94	68.889	Oryzias_latipes_hsok
ENSAMXG00000029240	-	97	68.889	ENSOMEG00000007873	trnau1apa	94	68.889	Oryzias_melastigma
ENSAMXG00000029240	-	98	65.556	ENSOGAG00000002274	TRNAU1AP	95	65.556	Otolemur_garnettii
ENSAMXG00000029240	-	98	65.556	ENSOARG00000002843	TRNAU1AP	95	65.556	Ovis_aries
ENSAMXG00000029240	-	98	65.556	ENSPPAG00000033927	TRNAU1AP	95	65.556	Pan_paniscus
ENSAMXG00000029240	-	98	65.556	ENSPPRG00000004416	TRNAU1AP	95	65.556	Panthera_pardus
ENSAMXG00000029240	-	98	65.556	ENSPTIG00000016677	TRNAU1AP	95	65.556	Panthera_tigris_altaica
ENSAMXG00000029240	-	95	61.194	ENSPTRG00000000434	-	89	61.194	Pan_troglodytes
ENSAMXG00000029240	-	98	65.556	ENSPANG00000016019	TRNAU1AP	95	65.556	Papio_anubis
ENSAMXG00000029240	-	95	76.404	ENSPKIG00000015511	trnau1apa	90	76.404	Paramormyrops_kingsleyae
ENSAMXG00000029240	-	99	64.322	ENSPKIG00000022205	-	98	64.824	Paramormyrops_kingsleyae
ENSAMXG00000029240	-	97	67.089	ENSPSIG00000006864	TRNAU1AP	96	67.089	Pelodiscus_sinensis
ENSAMXG00000029240	-	97	70.000	ENSPMGG00000023893	trnau1apa	89	70.000	Periophthalmus_magnuspinnatus
ENSAMXG00000029240	-	98	64.444	ENSPEMG00000007877	Trnau1ap	95	64.444	Peromyscus_maniculatus_bairdii
ENSAMXG00000029240	-	64	54.762	ENSPMAG00000005934	trnau1apa	91	54.762	Petromyzon_marinus
ENSAMXG00000029240	-	100	69.565	ENSPFOG00000008100	trnau1apa	94	69.565	Poecilia_formosa
ENSAMXG00000029240	-	100	67.500	ENSPLAG00000010236	trnau1apa	94	67.500	Poecilia_latipinna
ENSAMXG00000029240	-	100	70.000	ENSPMEG00000016387	trnau1apa	89	70.000	Poecilia_mexicana
ENSAMXG00000029240	-	95	67.857	ENSPREG00000019821	trnau1apa	86	67.857	Poecilia_reticulata
ENSAMXG00000029240	-	68	60.656	ENSPPYG00000001639	-	94	60.656	Pongo_abelii
ENSAMXG00000029240	-	96	39.662	ENSPCOG00000023470	-	98	42.917	Propithecus_coquereli
ENSAMXG00000029240	-	98	65.556	ENSPCOG00000027712	-	95	65.556	Propithecus_coquereli
ENSAMXG00000029240	-	98	65.556	ENSPVAG00000017214	TRNAU1AP	95	65.556	Pteropus_vampyrus
ENSAMXG00000029240	-	97	69.892	ENSPNYG00000010130	trnau1apa	98	69.892	Pundamilia_nyererei
ENSAMXG00000029240	-	94	63.636	ENSPNAG00000024905	trnau1apa	88	63.636	Pygocentrus_nattereri
ENSAMXG00000029240	-	98	65.556	ENSRBIG00000029083	TRNAU1AP	95	65.556	Rhinopithecus_bieti
ENSAMXG00000029240	-	98	65.556	ENSRROG00000029128	TRNAU1AP	95	65.556	Rhinopithecus_roxellana
ENSAMXG00000029240	-	98	65.556	ENSSBOG00000021299	TRNAU1AP	95	65.556	Saimiri_boliviensis_boliviensis
ENSAMXG00000029240	-	96	65.556	ENSSHAG00000008108	TRNAU1AP	94	65.556	Sarcophilus_harrisii
ENSAMXG00000029240	-	97	69.318	ENSSMAG00000020851	trnau1apa	93	69.318	Scophthalmus_maximus
ENSAMXG00000029240	-	95	71.591	ENSSDUG00000011734	trnau1apa	92	71.591	Seriola_dumerili
ENSAMXG00000029240	-	97	66.265	ENSSARG00000007536	TRNAU1AP	96	66.265	Sorex_araneus
ENSAMXG00000029240	-	76	41.447	ENSSPUG00000010415	-	81	41.447	Sphenodon_punctatus
ENSAMXG00000029240	-	96	63.333	ENSSPUG00000010400	-	94	63.333	Sphenodon_punctatus
ENSAMXG00000029240	-	95	71.591	ENSSPAG00000005029	trnau1apa	92	71.591	Stegastes_partitus
ENSAMXG00000029240	-	98	65.556	ENSSSCG00000030284	TRNAU1AP	95	65.556	Sus_scrofa
ENSAMXG00000029240	-	95	68.675	ENSTGUG00000000735	-	95	68.675	Taeniopygia_guttata
ENSAMXG00000029240	-	97	30.882	ENSTGUG00000005908	-	95	32.995	Taeniopygia_guttata
ENSAMXG00000029240	-	97	72.727	ENSTRUG00000003352	trnau1apa	93	72.727	Takifugu_rubripes
ENSAMXG00000029240	-	97	69.318	ENSTNIG00000006129	trnau1apa	93	69.318	Tetraodon_nigroviridis
ENSAMXG00000029240	-	98	64.516	ENSTBEG00000008049	-	88	64.516	Tupaia_belangeri
ENSAMXG00000029240	-	98	65.556	ENSTTRG00000001854	TRNAU1AP	95	65.556	Tursiops_truncatus
ENSAMXG00000029240	-	97	64.557	ENSUAMG00000008789	TRNAU1AP	96	64.557	Ursus_americanus
ENSAMXG00000029240	-	98	65.556	ENSUMAG00000011068	TRNAU1AP	95	65.556	Ursus_maritimus
ENSAMXG00000029240	-	97	42.708	ENSVPAG00000006778	TRNAU1AP	95	42.708	Vicugna_pacos
ENSAMXG00000029240	-	96	62.921	ENSVVUG00000012518	TRNAU1AP	88	62.921	Vulpes_vulpes
ENSAMXG00000029240	-	95	69.565	ENSXMAG00000017361	trnau1apa	93	69.565	Xiphophorus_maculatus