EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000029404 (Gene tree)
Gene ID: 103022311
Gene Symbol: ptcd2
Alias: zgc:112401
Full Name: pentatricopeptide repeat domain 2
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 12721 bases
Position: chrAPWO02000139.1:4827953-4840673
Accession: 103022311
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000050105	MRP-S27	PF10037.9	1.8e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000042283	-	4152	XM_007259623	ENSAMXP00000050105	370 (aa)	XP_007259685	W5KR92

Gene Model

Click here to download ENSAMXG00000029404's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000029404's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000029404	ptcd2	88	44.242	ENSG00000049883	PTCD2	94	40.526	Homo_sapiens
ENSAMXG00000029404	ptcd2	100	50.653	ENSAPOG00000020682	ptcd2	100	50.653	Acanthochromis_polyacanthus
ENSAMXG00000029404	ptcd2	86	45.820	ENSAMEG00000007194	PTCD2	83	45.820	Ailuropoda_melanoleuca
ENSAMXG00000029404	ptcd2	92	47.564	ENSACIG00000002053	ptcd2	100	47.564	Amphilophus_citrinellus
ENSAMXG00000029404	ptcd2	100	51.958	ENSAOCG00000006616	ptcd2	98	51.958	Amphiprion_ocellaris
ENSAMXG00000029404	ptcd2	100	51.697	ENSAPEG00000022926	ptcd2	98	51.697	Amphiprion_percula
ENSAMXG00000029404	ptcd2	95	44.475	ENSACAG00000009747	PTCD2	92	44.475	Anolis_carolinensis
ENSAMXG00000029404	ptcd2	89	43.567	ENSANAG00000029353	PTCD2	88	43.567	Aotus_nancymaae
ENSAMXG00000029404	ptcd2	96	51.105	ENSACLG00000027742	ptcd2	92	51.105	Astatotilapia_calliptera
ENSAMXG00000029404	ptcd2	88	44.512	ENSBTAG00000014675	PTCD2	85	44.512	Bos_taurus
ENSAMXG00000029404	ptcd2	88	44.817	ENSCJAG00000016364	PTCD2	85	44.817	Callithrix_jacchus
ENSAMXG00000029404	ptcd2	91	45.797	ENSCAFG00000007982	PTCD2	81	45.797	Canis_familiaris
ENSAMXG00000029404	ptcd2	84	46.519	ENSCAFG00020019147	PTCD2	89	46.519	Canis_lupus_dingo
ENSAMXG00000029404	ptcd2	88	44.512	ENSCHIG00000017118	PTCD2	85	44.512	Capra_hircus
ENSAMXG00000029404	ptcd2	87	42.331	ENSCPOG00000040168	PTCD2	85	42.331	Cavia_porcellus
ENSAMXG00000029404	ptcd2	89	43.275	ENSCCAG00000029389	-	88	43.275	Cebus_capucinus
ENSAMXG00000029404	ptcd2	77	43.686	ENSCCAG00000021996	-	90	43.686	Cebus_capucinus
ENSAMXG00000029404	ptcd2	86	44.892	ENSCATG00000019069	PTCD2	84	44.892	Cercocebus_atys
ENSAMXG00000029404	ptcd2	92	41.399	ENSCLAG00000000072	PTCD2	90	41.399	Chinchilla_lanigera
ENSAMXG00000029404	ptcd2	86	45.062	ENSCSAG00000015623	PTCD2	86	45.122	Chlorocebus_sabaeus
ENSAMXG00000029404	ptcd2	87	43.425	ENSCPBG00000000216	PTCD2	87	42.188	Chrysemys_picta_bellii
ENSAMXG00000029404	ptcd2	88	44.242	ENSCANG00000035636	PTCD2	85	44.242	Colobus_angolensis_palliatus
ENSAMXG00000029404	ptcd2	88	46.061	ENSCGRG00001015289	Ptcd2	72	46.061	Cricetulus_griseus_chok1gshd
ENSAMXG00000029404	ptcd2	88	46.061	ENSCGRG00000006193	Ptcd2	72	46.061	Cricetulus_griseus_crigri
ENSAMXG00000029404	ptcd2	92	51.585	ENSCVAG00000001285	ptcd2	89	51.585	Cyprinodon_variegatus
ENSAMXG00000029404	ptcd2	98	53.134	ENSDARG00000035391	ptcd2	95	53.134	Danio_rerio
ENSAMXG00000029404	ptcd2	92	44.315	ENSDNOG00000008719	PTCD2	90	44.315	Dasypus_novemcinctus
ENSAMXG00000029404	ptcd2	88	44.880	ENSDORG00000004921	Ptcd2	86	44.880	Dipodomys_ordii
ENSAMXG00000029404	ptcd2	87	42.988	ENSETEG00000016542	PTCD2	84	42.988	Echinops_telfairi
ENSAMXG00000029404	ptcd2	87	44.207	ENSEASG00005018038	PTCD2	86	44.207	Equus_asinus_asinus
ENSAMXG00000029404	ptcd2	88	43.807	ENSECAG00000007022	PTCD2	85	43.807	Equus_caballus
ENSAMXG00000029404	ptcd2	91	43.953	ENSEEUG00000014031	PTCD2	85	43.953	Erinaceus_europaeus
ENSAMXG00000029404	ptcd2	96	50.693	ENSELUG00000003584	ptcd2	94	50.693	Esox_lucius
ENSAMXG00000029404	ptcd2	75	44.170	ENSFCAG00000045432	PTCD2	66	44.170	Felis_catus
ENSAMXG00000029404	ptcd2	80	42.667	ENSFALG00000010299	PTCD2	91	42.667	Ficedula_albicollis
ENSAMXG00000029404	ptcd2	91	41.935	ENSFDAG00000018461	PTCD2	89	41.935	Fukomys_damarensis
ENSAMXG00000029404	ptcd2	92	49.425	ENSGMOG00000003637	ptcd2	90	49.425	Gadus_morhua
ENSAMXG00000029404	ptcd2	88	41.212	ENSGALG00000038260	PTCD2	93	40.510	Gallus_gallus
ENSAMXG00000029404	ptcd2	91	45.029	ENSGAGG00000021952	PTCD2	88	45.029	Gopherus_agassizii
ENSAMXG00000029404	ptcd2	88	44.242	ENSGGOG00000010695	PTCD2	85	44.242	Gorilla_gorilla
ENSAMXG00000029404	ptcd2	100	49.871	ENSHBUG00000009191	ptcd2	98	49.871	Haplochromis_burtoni
ENSAMXG00000029404	ptcd2	95	42.090	ENSHGLG00000001234	PTCD2	91	42.090	Heterocephalus_glaber_female
ENSAMXG00000029404	ptcd2	95	42.090	ENSHGLG00100015419	PTCD2	91	42.090	Heterocephalus_glaber_male
ENSAMXG00000029404	ptcd2	87	51.376	ENSHCOG00000001703	ptcd2	92	50.423	Hippocampus_comes
ENSAMXG00000029404	ptcd2	100	54.688	ENSIPUG00000006080	ptcd2	100	54.688	Ictalurus_punctatus
ENSAMXG00000029404	ptcd2	93	41.880	ENSSTOG00000006596	PTCD2	92	41.880	Ictidomys_tridecemlineatus
ENSAMXG00000029404	ptcd2	88	43.505	ENSJJAG00000024388	Ptcd2	86	43.505	Jaculus_jaculus
ENSAMXG00000029404	ptcd2	94	48.295	ENSKMAG00000009329	ptcd2	92	48.295	Kryptolebias_marmoratus
ENSAMXG00000029404	ptcd2	99	50.649	ENSLBEG00000024871	ptcd2	97	50.649	Labrus_bergylta
ENSAMXG00000029404	ptcd2	92	48.547	ENSLOCG00000011122	ptcd2	90	48.547	Lepisosteus_oculatus
ENSAMXG00000029404	ptcd2	73	48.540	ENSLAFG00000004115	PTCD2	91	48.227	Loxodonta_africana
ENSAMXG00000029404	ptcd2	88	44.848	ENSMFAG00000031516	PTCD2	85	44.848	Macaca_fascicularis
ENSAMXG00000029404	ptcd2	93	43.785	ENSMNEG00000007537	PTCD2	92	43.785	Macaca_nemestrina
ENSAMXG00000029404	ptcd2	88	44.848	ENSMLEG00000031093	PTCD2	85	44.848	Mandrillus_leucophaeus
ENSAMXG00000029404	ptcd2	100	50.392	ENSMAMG00000018529	ptcd2	100	50.392	Mastacembelus_armatus
ENSAMXG00000029404	ptcd2	96	51.105	ENSMZEG00005003625	ptcd2	92	51.105	Maylandia_zebra
ENSAMXG00000029404	ptcd2	86	42.105	ENSMGAG00000005033	PTCD2	93	42.105	Meleagris_gallopavo
ENSAMXG00000029404	ptcd2	91	43.478	ENSMICG00000004535	PTCD2	89	43.478	Microcebus_murinus
ENSAMXG00000029404	ptcd2	88	46.341	ENSMOCG00000019985	Ptcd2	86	46.341	Microtus_ochrogaster
ENSAMXG00000029404	ptcd2	92	42.486	ENSMODG00000001695	PTCD2	89	42.486	Monodelphis_domestica
ENSAMXG00000029404	ptcd2	96	52.078	ENSMALG00000022372	ptcd2	93	52.078	Monopterus_albus
ENSAMXG00000029404	ptcd2	88	46.951	MGP_CAROLIEiJ_G0018829	Ptcd2	86	46.951	Mus_caroli
ENSAMXG00000029404	ptcd2	88	46.341	ENSMUSG00000021650	Ptcd2	86	46.341	Mus_musculus
ENSAMXG00000029404	ptcd2	88	46.341	MGP_PahariEiJ_G0015904	Ptcd2	86	46.341	Mus_pahari
ENSAMXG00000029404	ptcd2	88	46.951	MGP_SPRETEiJ_G0019711	Ptcd2	86	46.951	Mus_spretus
ENSAMXG00000029404	ptcd2	87	46.769	ENSMPUG00000014401	PTCD2	85	46.769	Mustela_putorius_furo
ENSAMXG00000029404	ptcd2	86	44.410	ENSMLUG00000007374	PTCD2	84	44.479	Myotis_lucifugus
ENSAMXG00000029404	ptcd2	87	43.865	ENSNGAG00000005027	Ptcd2	85	43.865	Nannospalax_galili
ENSAMXG00000029404	ptcd2	88	48.795	ENSNBRG00000000092	-	100	48.795	Neolamprologus_brichardi
ENSAMXG00000029404	ptcd2	96	50.824	ENSNBRG00000008174	ptcd2	94	50.824	Neolamprologus_brichardi
ENSAMXG00000029404	ptcd2	88	43.636	ENSNLEG00000004516	PTCD2	85	43.636	Nomascus_leucogenys
ENSAMXG00000029404	ptcd2	92	42.980	ENSOPRG00000007290	PTCD2	90	42.980	Ochotona_princeps
ENSAMXG00000029404	ptcd2	91	42.398	ENSODEG00000016417	PTCD2	89	42.398	Octodon_degus
ENSAMXG00000029404	ptcd2	82	51.466	ENSONIG00000011269	ptcd2	89	51.466	Oreochromis_niloticus
ENSAMXG00000029404	ptcd2	87	43.865	ENSOCUG00000007970	PTCD2	92	42.614	Oryctolagus_cuniculus
ENSAMXG00000029404	ptcd2	92	53.448	ENSORLG00000003851	ptcd2	91	52.368	Oryzias_latipes
ENSAMXG00000029404	ptcd2	92	52.299	ENSORLG00020009823	ptcd2	90	52.299	Oryzias_latipes_hni
ENSAMXG00000029404	ptcd2	93	52.273	ENSORLG00015016777	ptcd2	99	52.273	Oryzias_latipes_hsok
ENSAMXG00000029404	ptcd2	95	48.876	ENSOMEG00000012396	ptcd2	87	48.876	Oryzias_melastigma
ENSAMXG00000029404	ptcd2	94	42.061	ENSOGAG00000008390	PTCD2	93	42.061	Otolemur_garnettii
ENSAMXG00000029404	ptcd2	88	44.817	ENSOARG00000005087	PTCD2	84	44.817	Ovis_aries
ENSAMXG00000029404	ptcd2	88	44.242	ENSPPAG00000028480	PTCD2	85	44.242	Pan_paniscus
ENSAMXG00000029404	ptcd2	88	44.242	ENSPTRG00000016968	PTCD2	85	44.242	Pan_troglodytes
ENSAMXG00000029404	ptcd2	85	44.340	ENSPANG00000006611	PTCD2	82	44.340	Papio_anubis
ENSAMXG00000029404	ptcd2	89	49.701	ENSPKIG00000019896	ptcd2	87	49.701	Paramormyrops_kingsleyae
ENSAMXG00000029404	ptcd2	84	45.541	ENSPSIG00000014559	PTCD2	97	45.541	Pelodiscus_sinensis
ENSAMXG00000029404	ptcd2	88	46.951	ENSPEMG00000000884	Ptcd2	86	46.951	Peromyscus_maniculatus_bairdii
ENSAMXG00000029404	ptcd2	91	43.860	ENSPCIG00000029047	PTCD2	89	43.860	Phascolarctos_cinereus
ENSAMXG00000029404	ptcd2	91	49.704	ENSPLAG00000010456	ptcd2	93	48.468	Poecilia_latipinna
ENSAMXG00000029404	ptcd2	92	50.289	ENSPREG00000021797	ptcd2	88	50.289	Poecilia_reticulata
ENSAMXG00000029404	ptcd2	88	38.788	ENSPPYG00000015543	PTCD2	83	38.788	Pongo_abelii
ENSAMXG00000029404	ptcd2	75	40.569	ENSPCAG00000006806	PTCD2	89	40.569	Procavia_capensis
ENSAMXG00000029404	ptcd2	89	42.059	ENSPVAG00000010935	PTCD2	88	42.059	Pteropus_vampyrus
ENSAMXG00000029404	ptcd2	96	50.829	ENSPNYG00000003122	ptcd2	92	50.829	Pundamilia_nyererei
ENSAMXG00000029404	ptcd2	100	62.338	ENSPNAG00000021490	ptcd2	100	62.338	Pygocentrus_nattereri
ENSAMXG00000029404	ptcd2	88	46.341	ENSRNOG00000028403	Ptcd2	86	46.341	Rattus_norvegicus
ENSAMXG00000029404	ptcd2	93	40.563	ENSRBIG00000032929	PTCD2	91	40.563	Rhinopithecus_bieti
ENSAMXG00000029404	ptcd2	93	43.785	ENSRROG00000000080	PTCD2	92	43.785	Rhinopithecus_roxellana
ENSAMXG00000029404	ptcd2	88	44.207	ENSSBOG00000018911	PTCD2	86	44.207	Saimiri_boliviensis_boliviensis
ENSAMXG00000029404	ptcd2	99	40.270	ENSSHAG00000003833	PTCD2	95	40.270	Sarcophilus_harrisii
ENSAMXG00000029404	ptcd2	94	47.658	ENSSFOG00015015415	ptcd2	94	47.658	Scleropages_formosus
ENSAMXG00000029404	ptcd2	94	48.315	ENSSMAG00000010350	ptcd2	92	48.315	Scophthalmus_maximus
ENSAMXG00000029404	ptcd2	95	51.541	ENSSDUG00000008142	ptcd2	89	51.541	Seriola_dumerili
ENSAMXG00000029404	ptcd2	95	51.541	ENSSLDG00000015284	ptcd2	93	51.541	Seriola_lalandi_dorsalis
ENSAMXG00000029404	ptcd2	56	49.282	ENSSARG00000004983	PTCD2	91	41.197	Sorex_araneus
ENSAMXG00000029404	ptcd2	86	41.796	ENSSPUG00000000176	PTCD2	83	41.796	Sphenodon_punctatus
ENSAMXG00000029404	ptcd2	98	49.733	ENSSPAG00000008591	ptcd2	96	49.733	Stegastes_partitus
ENSAMXG00000029404	ptcd2	92	44.669	ENSSSCG00000016975	PTCD2	82	44.669	Sus_scrofa
ENSAMXG00000029404	ptcd2	85	42.500	ENSTGUG00000005705	PTCD2	92	42.500	Taeniopygia_guttata
ENSAMXG00000029404	ptcd2	88	42.988	ENSTBEG00000016559	PTCD2	85	42.988	Tupaia_belangeri
ENSAMXG00000029404	ptcd2	88	44.848	ENSTTRG00000011851	PTCD2	85	44.848	Tursiops_truncatus
ENSAMXG00000029404	ptcd2	86	45.511	ENSUAMG00000007583	PTCD2	76	45.511	Ursus_americanus
ENSAMXG00000029404	ptcd2	86	45.511	ENSUMAG00000007666	PTCD2	84	45.511	Ursus_maritimus
ENSAMXG00000029404	ptcd2	88	42.462	ENSVPAG00000009597	PTCD2	84	42.462	Vicugna_pacos
ENSAMXG00000029404	ptcd2	92	44.957	ENSVVUG00000007299	-	90	44.957	Vulpes_vulpes
ENSAMXG00000029404	ptcd2	93	41.026	ENSXETG00000031652	PTCD2	92	41.026	Xenopus_tropicalis
ENSAMXG00000029404	ptcd2	91	50.888	ENSXMAG00000005940	ptcd2	85	49.724	Xiphophorus_maculatus