EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000029434 (Gene tree)
Gene ID: 103031946
Gene Symbol: snrpb
Alias: zgc:77315
Full Name: small nuclear ribonucleoprotein polypeptides B and B1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 7254 bases
Position: chr13:27345344-27352597
Accession: 103031946
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000049527	LSM	PF01423.22	7.7e-19	1	1
ENSAMXP00000036447	LSM	PF01423.22	7.9e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000050064	-	3310	XM_007252677	ENSAMXP00000036447	238 (aa)	XP_007252739	UPI000440F884
ENSAMXT00000040891	-	3691	-	ENSAMXP00000049527	237 (aa)	-	W5K024

Gene Model

Click here to download ENSAMXG00000029434's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000029434's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000029434	snrpb	70	94.048	ENSG00000125835	SNRPB	74	98.077	Homo_sapiens
ENSAMXG00000029434	snrpb	99	97.899	ENSAPOG00000019606	snrpb	81	97.899	Acanthochromis_polyacanthus
ENSAMXG00000029434	snrpb	70	94.012	ENSAMEG00000011353	SNRPB	75	92.857	Ailuropoda_melanoleuca
ENSAMXG00000029434	snrpb	94	97.768	ENSACIG00000014480	snrpb	99	97.768	Amphilophus_citrinellus
ENSAMXG00000029434	snrpb	99	97.479	ENSAOCG00000006876	snrpb	99	97.479	Amphiprion_ocellaris
ENSAMXG00000029434	snrpb	99	97.479	ENSAPEG00000021585	snrpb	99	97.479	Amphiprion_percula
ENSAMXG00000029434	snrpb	99	97.059	ENSATEG00000009836	snrpb	99	97.059	Anabas_testudineus
ENSAMXG00000029434	snrpb	67	95.000	ENSACAG00000002053	SNRPB	69	93.750	Anolis_carolinensis
ENSAMXG00000029434	snrpb	96	87.013	ENSANAG00000036271	-	68	84.524	Aotus_nancymaae
ENSAMXG00000029434	snrpb	70	94.048	ENSANAG00000024443	-	76	92.896	Aotus_nancymaae
ENSAMXG00000029434	snrpb	99	97.899	ENSACLG00000014707	snrpb	99	97.899	Astatotilapia_calliptera
ENSAMXG00000029434	snrpb	91	83.710	ENSBTAG00000001038	SNRPB	79	93.443	Bos_taurus
ENSAMXG00000029434	snrpb	70	94.048	ENSCJAG00000020971	-	73	92.857	Callithrix_jacchus
ENSAMXG00000029434	snrpb	89	85.981	ENSCJAG00000023097	-	70	86.310	Callithrix_jacchus
ENSAMXG00000029434	snrpb	70	94.048	ENSCAFG00000006693	-	73	92.857	Canis_familiaris
ENSAMXG00000029434	snrpb	76	80.435	ENSCAFG00000031109	-	70	81.065	Canis_familiaris
ENSAMXG00000029434	snrpb	70	94.048	ENSCAFG00020016981	-	76	92.896	Canis_lupus_dingo
ENSAMXG00000029434	snrpb	76	94.536	ENSCHIG00000025449	-	79	93.443	Capra_hircus
ENSAMXG00000029434	snrpb	70	94.048	ENSTSYG00000014498	-	73	92.857	Carlito_syrichta
ENSAMXG00000029434	snrpb	97	73.043	ENSTSYG00000032303	-	55	77.027	Carlito_syrichta
ENSAMXG00000029434	snrpb	70	94.012	ENSCAPG00000012669	SNRPB	76	92.857	Cavia_aperea
ENSAMXG00000029434	snrpb	70	94.048	ENSCPOG00000039408	SNRPB	73	92.857	Cavia_porcellus
ENSAMXG00000029434	snrpb	70	94.048	ENSCCAG00000026002	SNRPB	76	92.896	Cebus_capucinus
ENSAMXG00000029434	snrpb	54	82.677	ENSCCAG00000035140	-	89	84.314	Cebus_capucinus
ENSAMXG00000029434	snrpb	70	94.048	ENSCATG00000030230	SNRPB	73	92.857	Cercocebus_atys
ENSAMXG00000029434	snrpb	70	94.048	ENSCLAG00000012442	SNRPB	77	92.896	Chinchilla_lanigera
ENSAMXG00000029434	snrpb	70	94.048	ENSCSAG00000010840	SNRPB	73	92.857	Chlorocebus_sabaeus
ENSAMXG00000029434	snrpb	70	95.833	ENSCPBG00000026801	SNRPB	80	93.989	Chrysemys_picta_bellii
ENSAMXG00000029434	snrpb	70	94.048	ENSCANG00000019461	SNRPB	76	92.896	Colobus_angolensis_palliatus
ENSAMXG00000029434	snrpb	70	94.048	ENSCGRG00001023046	Snrpb	74	92.179	Cricetulus_griseus_chok1gshd
ENSAMXG00000029434	snrpb	68	93.865	ENSCGRG00000010423	Snrpb	71	92.500	Cricetulus_griseus_crigri
ENSAMXG00000029434	snrpb	99	97.881	ENSCSEG00000020328	snrpb	99	97.881	Cynoglossus_semilaevis
ENSAMXG00000029434	snrpb	99	98.729	ENSDARG00000011125	snrpb	99	98.729	Danio_rerio
ENSAMXG00000029434	snrpb	70	94.048	ENSDNOG00000015545	-	76	92.896	Dasypus_novemcinctus
ENSAMXG00000029434	snrpb	70	88.095	ENSDNOG00000007896	-	75	86.339	Dasypus_novemcinctus
ENSAMXG00000029434	snrpb	74	94.350	ENSDORG00000029558	Snrpb	77	93.220	Dipodomys_ordii
ENSAMXG00000029434	snrpb	76	63.536	FBgn0262601	SmB	74	69.128	Drosophila_melanogaster
ENSAMXG00000029434	snrpb	78	79.348	ENSEBUG00000007467	SNRPB	62	88.591	Eptatretus_burgeri
ENSAMXG00000029434	snrpb	70	93.452	ENSEASG00005012991	SNRPB	73	92.262	Equus_asinus_asinus
ENSAMXG00000029434	snrpb	70	94.048	ENSECAG00000011944	SNRPB	73	92.857	Equus_caballus
ENSAMXG00000029434	snrpb	70	94.048	ENSEEUG00000015568	SNRPB	64	92.896	Erinaceus_europaeus
ENSAMXG00000029434	snrpb	100	97.899	ENSELUG00000014564	snrpb	100	97.899	Esox_lucius
ENSAMXG00000029434	snrpb	70	94.048	ENSFCAG00000034090	-	73	92.857	Felis_catus
ENSAMXG00000029434	snrpb	73	94.286	ENSFALG00000004866	SNRPB	75	93.143	Ficedula_albicollis
ENSAMXG00000029434	snrpb	70	94.048	ENSFDAG00000009937	SNRPB	75	92.857	Fukomys_damarensis
ENSAMXG00000029434	snrpb	76	94.536	ENSGALG00000035421	SNRPN	76	93.443	Gallus_gallus
ENSAMXG00000029434	snrpb	71	98.817	ENSGAFG00000019558	snrpb	72	98.788	Gambusia_affinis
ENSAMXG00000029434	snrpb	99	97.881	ENSGACG00000003262	snrpb	99	97.881	Gasterosteus_aculeatus
ENSAMXG00000029434	snrpb	70	95.833	ENSGAGG00000001308	SNRPB	76	93.989	Gopherus_agassizii
ENSAMXG00000029434	snrpb	70	94.048	ENSGGOG00000016138	SNRPB	73	92.857	Gorilla_gorilla
ENSAMXG00000029434	snrpb	99	97.899	ENSHBUG00000008369	snrpb	99	97.899	Haplochromis_burtoni
ENSAMXG00000029434	snrpb	70	94.048	ENSHGLG00000016241	-	73	92.857	Heterocephalus_glaber_female
ENSAMXG00000029434	snrpb	63	85.333	ENSHGLG00000016505	-	72	85.333	Heterocephalus_glaber_female
ENSAMXG00000029434	snrpb	63	85.333	ENSHGLG00100004178	-	72	85.333	Heterocephalus_glaber_male
ENSAMXG00000029434	snrpb	70	94.048	ENSHGLG00100012877	-	76	92.896	Heterocephalus_glaber_male
ENSAMXG00000029434	snrpb	99	98.305	ENSHCOG00000014888	snrpb	99	98.305	Hippocampus_comes
ENSAMXG00000029434	snrpb	100	99.160	ENSIPUG00000024569	SNRPB	100	99.160	Ictalurus_punctatus
ENSAMXG00000029434	snrpb	90	77.570	ENSSTOG00000027821	-	62	94.118	Ictidomys_tridecemlineatus
ENSAMXG00000029434	snrpb	70	92.262	ENSSTOG00000033664	-	76	91.257	Ictidomys_tridecemlineatus
ENSAMXG00000029434	snrpb	70	94.048	ENSJJAG00000024170	Snrpb	73	92.857	Jaculus_jaculus
ENSAMXG00000029434	snrpb	72	98.824	ENSKMAG00000014494	snrpb	68	98.795	Kryptolebias_marmoratus
ENSAMXG00000029434	snrpb	99	98.729	ENSLBEG00000005678	snrpb	99	98.729	Labrus_bergylta
ENSAMXG00000029434	snrpb	76	93.443	ENSLACG00000011459	SNRPB	76	92.896	Latimeria_chalumnae
ENSAMXG00000029434	snrpb	100	98.739	ENSLOCG00000002687	snrpb	100	98.739	Lepisosteus_oculatus
ENSAMXG00000029434	snrpb	76	90.659	ENSLAFG00000017588	SNRPB	78	89.560	Loxodonta_africana
ENSAMXG00000029434	snrpb	70	94.048	ENSMFAG00000038756	SNRPB	73	92.857	Macaca_fascicularis
ENSAMXG00000029434	snrpb	70	94.048	ENSMMUG00000010050	SNRPB	73	92.857	Macaca_mulatta
ENSAMXG00000029434	snrpb	70	94.048	ENSMNEG00000027954	SNRPB	73	92.857	Macaca_nemestrina
ENSAMXG00000029434	snrpb	70	94.048	ENSMLEG00000022346	SNRPB	76	92.896	Mandrillus_leucophaeus
ENSAMXG00000029434	snrpb	99	97.890	ENSMAMG00000009294	snrpb	96	97.890	Mastacembelus_armatus
ENSAMXG00000029434	snrpb	99	97.899	ENSMZEG00005011856	snrpb	99	97.899	Maylandia_zebra
ENSAMXG00000029434	snrpb	76	84.530	ENSMICG00000015983	-	77	83.060	Microcebus_murinus
ENSAMXG00000029434	snrpb	76	94.536	ENSMICG00000016519	SNRPB	79	93.443	Microcebus_murinus
ENSAMXG00000029434	snrpb	59	77.698	ENSMOCG00000021362	-	58	77.698	Microtus_ochrogaster
ENSAMXG00000029434	snrpb	70	93.452	ENSMOCG00000002892	-	73	92.262	Microtus_ochrogaster
ENSAMXG00000029434	snrpb	96	98.238	ENSMMOG00000013226	snrpb	97	98.673	Mola_mola
ENSAMXG00000029434	snrpb	99	97.059	ENSMALG00000020839	snrpb	80	97.059	Monopterus_albus
ENSAMXG00000029434	snrpb	70	94.048	MGP_CAROLIEiJ_G0024293	Snrpb	74	98.077	Mus_caroli
ENSAMXG00000029434	snrpb	70	94.048	ENSMUSG00000027404	Snrpb	74	98.077	Mus_musculus
ENSAMXG00000029434	snrpb	70	94.048	MGP_PahariEiJ_G0025738	Snrpb	74	98.077	Mus_pahari
ENSAMXG00000029434	snrpb	70	94.048	MGP_SPRETEiJ_G0025213	Snrpb	73	98.077	Mus_spretus
ENSAMXG00000029434	snrpb	70	94.048	ENSMPUG00000009283	SNRPB	73	92.857	Mustela_putorius_furo
ENSAMXG00000029434	snrpb	92	90.045	ENSMLUG00000016951	SNRPB	92	90.498	Myotis_lucifugus
ENSAMXG00000029434	snrpb	70	94.048	ENSNGAG00000012051	Snrpb	73	92.857	Nannospalax_galili
ENSAMXG00000029434	snrpb	98	94.872	ENSNBRG00000006353	snrpb	89	94.872	Neolamprologus_brichardi
ENSAMXG00000029434	snrpb	70	94.048	ENSNLEG00000029067	SNRPB	76	92.896	Nomascus_leucogenys
ENSAMXG00000029434	snrpb	70	94.012	ENSMEUG00000015625	SNRPB	74	92.814	Notamacropus_eugenii
ENSAMXG00000029434	snrpb	70	88.690	ENSODEG00000016060	-	77	87.978	Octodon_degus
ENSAMXG00000029434	snrpb	92	88.636	ENSODEG00000004305	-	92	89.091	Octodon_degus
ENSAMXG00000029434	snrpb	99	97.899	ENSONIG00000000248	snrpb	99	97.899	Oreochromis_niloticus
ENSAMXG00000029434	snrpb	75	87.709	ENSOCUG00000022423	-	86	88.095	Oryctolagus_cuniculus
ENSAMXG00000029434	snrpb	89	66.197	ENSOCUG00000026813	-	63	66.216	Oryctolagus_cuniculus
ENSAMXG00000029434	snrpb	89	92.019	ENSOCUG00000028215	-	76	91.257	Oryctolagus_cuniculus
ENSAMXG00000029434	snrpb	76	94.536	ENSOCUG00000014042	-	76	93.443	Oryctolagus_cuniculus
ENSAMXG00000029434	snrpb	90	89.767	ENSOCUG00000021456	-	76	89.617	Oryctolagus_cuniculus
ENSAMXG00000029434	snrpb	76	97.765	ENSORLG00000021862	snrpb	69	99.398	Oryzias_latipes
ENSAMXG00000029434	snrpb	70	94.048	ENSOGAG00000016149	SNRPB	76	92.896	Otolemur_garnettii
ENSAMXG00000029434	snrpb	76	94.536	ENSOARG00000006740	SNRPB	79	93.443	Ovis_aries
ENSAMXG00000029434	snrpb	70	94.048	ENSPPAG00000036314	SNRPB	73	92.857	Pan_paniscus
ENSAMXG00000029434	snrpb	70	94.048	ENSPPRG00000003233	-	76	92.896	Panthera_pardus
ENSAMXG00000029434	snrpb	70	94.012	ENSPTIG00000007468	SNRPB	76	92.857	Panthera_tigris_altaica
ENSAMXG00000029434	snrpb	70	94.048	ENSPTRG00000013176	SNRPB	73	92.857	Pan_troglodytes
ENSAMXG00000029434	snrpb	70	94.048	ENSPANG00000020362	SNRPB	76	92.896	Papio_anubis
ENSAMXG00000029434	snrpb	100	98.319	ENSPKIG00000002865	snrpb	100	98.319	Paramormyrops_kingsleyae
ENSAMXG00000029434	snrpb	70	95.808	ENSPSIG00000014125	SNRPB	75	93.956	Pelodiscus_sinensis
ENSAMXG00000029434	snrpb	96	95.614	ENSPMGG00000016349	snrpb	97	95.614	Periophthalmus_magnuspinnatus
ENSAMXG00000029434	snrpb	70	94.048	ENSPEMG00000007948	Snrpb	73	92.857	Peromyscus_maniculatus_bairdii
ENSAMXG00000029434	snrpb	70	93.413	ENSPCIG00000004694	SNRPB	76	92.308	Phascolarctos_cinereus
ENSAMXG00000029434	snrpb	79	78.351	ENSPLAG00000014130	snrpb	59	99.259	Poecilia_latipinna
ENSAMXG00000029434	snrpb	79	80.319	ENSPREG00000015515	snrpb	62	99.259	Poecilia_reticulata
ENSAMXG00000029434	snrpb	70	94.048	ENSPPYG00000010841	SNRPB	73	92.857	Pongo_abelii
ENSAMXG00000029434	snrpb	70	94.048	ENSPCOG00000013686	SNRPB	73	92.857	Propithecus_coquereli
ENSAMXG00000029434	snrpb	92	91.403	ENSPVAG00000017013	SNRPB	77	91.855	Pteropus_vampyrus
ENSAMXG00000029434	snrpb	99	97.899	ENSPNYG00000014788	snrpb	99	97.899	Pundamilia_nyererei
ENSAMXG00000029434	snrpb	100	99.580	ENSPNAG00000016126	snrpb	100	99.580	Pygocentrus_nattereri
ENSAMXG00000029434	snrpb	70	94.048	ENSRNOG00000006961	Snrpb	73	98.077	Rattus_norvegicus
ENSAMXG00000029434	snrpb	70	94.048	ENSRBIG00000040505	SNRPB	73	92.857	Rhinopithecus_bieti
ENSAMXG00000029434	snrpb	70	94.048	ENSRROG00000036094	SNRPB	76	92.896	Rhinopithecus_roxellana
ENSAMXG00000029434	snrpb	70	94.048	ENSSBOG00000027310	SNRPB	76	92.896	Saimiri_boliviensis_boliviensis
ENSAMXG00000029434	snrpb	70	94.643	ENSSHAG00000010394	SNRPB	76	93.443	Sarcophilus_harrisii
ENSAMXG00000029434	snrpb	100	97.059	ENSSFOG00015002870	snrpb	100	97.059	Scleropages_formosus
ENSAMXG00000029434	snrpb	99	98.305	ENSSMAG00000006766	snrpb	99	98.305	Scophthalmus_maximus
ENSAMXG00000029434	snrpb	99	97.899	ENSSDUG00000018539	snrpb	99	97.899	Seriola_dumerili
ENSAMXG00000029434	snrpb	99	97.899	ENSSLDG00000022391	snrpb	99	97.899	Seriola_lalandi_dorsalis
ENSAMXG00000029434	snrpb	92	80.455	ENSSARG00000003084	SNRPB	94	81.364	Sorex_araneus
ENSAMXG00000029434	snrpb	70	95.808	ENSSPUG00000015659	SNRPB	76	93.956	Sphenodon_punctatus
ENSAMXG00000029434	snrpb	99	97.899	ENSSPAG00000021992	snrpb	99	97.899	Stegastes_partitus
ENSAMXG00000029434	snrpb	96	74.236	ENSSSCG00000011966	-	77	69.945	Sus_scrofa
ENSAMXG00000029434	snrpb	76	94.536	ENSSSCG00000040857	-	79	93.443	Sus_scrofa
ENSAMXG00000029434	snrpb	74	80.226	ENSTGUG00000005684	SNRPB	59	96.429	Taeniopygia_guttata
ENSAMXG00000029434	snrpb	96	98.238	ENSTRUG00000023094	snrpb	99	98.238	Takifugu_rubripes
ENSAMXG00000029434	snrpb	99	98.305	ENSTNIG00000002991	snrpb	99	98.305	Tetraodon_nigroviridis
ENSAMXG00000029434	snrpb	70	94.048	ENSUAMG00000005984	-	80	91.667	Ursus_americanus
ENSAMXG00000029434	snrpb	90	55.760	ENSUMAG00000002123	-	63	94.161	Ursus_maritimus
ENSAMXG00000029434	snrpb	100	72.083	ENSVVUG00000010086	-	71	75.000	Vulpes_vulpes
ENSAMXG00000029434	snrpb	70	93.452	ENSVVUG00000025654	-	76	92.350	Vulpes_vulpes
ENSAMXG00000029434	snrpb	63	97.333	ENSXETG00000027266	snrpb	63	97.333	Xenopus_tropicalis
ENSAMXG00000029434	snrpb	79	77.320	ENSXMAG00000028767	snrpb	58	99.259	Xiphophorus_maculatus