EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000029878 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 4267 bases
Position: chr17:23313149-23317415
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000050644	zf-C2H2	PF00096.26	6.9e-37	1	5
ENSAMXP00000050644	zf-C2H2	PF00096.26	6.9e-37	2	5
ENSAMXP00000050644	zf-C2H2	PF00096.26	6.9e-37	3	5
ENSAMXP00000050644	zf-C2H2	PF00096.26	6.9e-37	4	5
ENSAMXP00000050644	zf-C2H2	PF00096.26	6.9e-37	5	5
ENSAMXP00000050644	zf-met	PF12874.7	1.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000033440	-	567	-	ENSAMXP00000050644	188 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000029878's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000029878's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000029878	-	96	84.831	ENSAMXG00000038636	-	100	84.831
ENSAMXG00000029878	-	94	57.500	ENSAMXG00000034857	-	66	57.500
ENSAMXG00000029878	-	99	69.412	ENSAMXG00000042275	-	97	69.412
ENSAMXG00000029878	-	93	50.667	ENSAMXG00000034333	-	83	53.125
ENSAMXG00000029878	-	99	52.976	ENSAMXG00000012589	-	88	52.976
ENSAMXG00000029878	-	92	68.605	ENSAMXG00000044110	-	89	68.605
ENSAMXG00000029878	-	91	44.800	ENSAMXG00000042191	zbtb47a	68	44.800
ENSAMXG00000029878	-	90	47.333	ENSAMXG00000044096	-	79	47.333
ENSAMXG00000029878	-	90	71.006	ENSAMXG00000037981	-	70	71.006
ENSAMXG00000029878	-	94	70.968	ENSAMXG00000040806	-	90	70.968
ENSAMXG00000029878	-	92	84.884	ENSAMXG00000007092	-	98	84.884
ENSAMXG00000029878	-	92	62.577	ENSAMXG00000031307	-	58	62.577
ENSAMXG00000029878	-	92	73.600	ENSAMXG00000030530	-	97	76.429
ENSAMXG00000029878	-	92	47.590	ENSAMXG00000035246	-	62	47.590
ENSAMXG00000029878	-	99	81.818	ENSAMXG00000000353	-	97	81.818
ENSAMXG00000029878	-	92	67.241	ENSAMXG00000043019	-	91	67.241
ENSAMXG00000029878	-	92	47.647	ENSAMXG00000033299	-	68	47.647
ENSAMXG00000029878	-	96	81.356	ENSAMXG00000041128	-	89	81.356
ENSAMXG00000029878	-	98	74.118	ENSAMXG00000043423	-	76	74.118
ENSAMXG00000029878	-	92	85.526	ENSAMXG00000035690	-	72	85.526
ENSAMXG00000029878	-	99	73.837	ENSAMXG00000010930	-	82	73.837
ENSAMXG00000029878	-	90	60.870	ENSAMXG00000043178	-	72	60.870
ENSAMXG00000029878	-	99	70.968	ENSAMXG00000039770	-	86	70.968
ENSAMXG00000029878	-	92	65.882	ENSAMXG00000017959	-	94	65.882
ENSAMXG00000029878	-	99	77.193	ENSAMXG00000038324	-	79	77.193
ENSAMXG00000029878	-	96	62.500	ENSAMXG00000038325	-	89	62.500
ENSAMXG00000029878	-	99	70.833	ENSAMXG00000031844	-	92	70.833
ENSAMXG00000029878	-	94	61.692	ENSAMXG00000029518	-	52	61.692
ENSAMXG00000029878	-	96	62.353	ENSAMXG00000043541	-	88	62.712
ENSAMXG00000029878	-	92	74.118	ENSAMXG00000039977	-	89	74.118
ENSAMXG00000029878	-	96	65.882	ENSAMXG00000043978	-	88	65.882
ENSAMXG00000029878	-	98	71.429	ENSAMXG00000037923	-	99	71.515
ENSAMXG00000029878	-	92	39.437	ENSAMXG00000033001	-	53	39.437
ENSAMXG00000029878	-	92	50.617	ENSAMXG00000037382	-	52	50.617
ENSAMXG00000029878	-	99	73.373	ENSAMXG00000034847	-	87	73.373
ENSAMXG00000029878	-	97	62.941	ENSAMXG00000029783	-	91	62.941
ENSAMXG00000029878	-	92	74.566	ENSAMXG00000037760	-	95	74.566
ENSAMXG00000029878	-	90	65.294	ENSAMXG00000044028	-	97	65.294
ENSAMXG00000029878	-	92	72.781	ENSAMXG00000001626	-	91	72.781
ENSAMXG00000029878	-	90	41.139	ENSAMXG00000044034	-	58	41.139
ENSAMXG00000029878	-	99	85.027	ENSAMXG00000041404	-	98	85.315
ENSAMXG00000029878	-	96	85.549	ENSAMXG00000037885	-	98	85.549
ENSAMXG00000029878	-	98	64.118	ENSAMXG00000038536	-	91	64.118
ENSAMXG00000029878	-	93	61.494	ENSAMXG00000043302	-	73	61.494
ENSAMXG00000029878	-	92	61.446	ENSAMXG00000042174	-	90	61.446
ENSAMXG00000029878	-	99	78.075	ENSAMXG00000041725	-	92	78.075
ENSAMXG00000029878	-	90	67.550	ENSAMXG00000033013	-	81	67.550
ENSAMXG00000029878	-	96	82.320	ENSAMXG00000035809	-	99	82.320
ENSAMXG00000029878	-	92	67.568	ENSAMXG00000029161	-	81	67.568
ENSAMXG00000029878	-	90	75.294	ENSAMXG00000031900	-	91	75.294
ENSAMXG00000029878	-	94	53.020	ENSAMXG00000007973	-	91	50.365
ENSAMXG00000029878	-	93	64.497	ENSAMXG00000019489	-	95	64.497
ENSAMXG00000029878	-	90	41.520	ENSAMXG00000039622	zbtb41	51	41.520
ENSAMXG00000029878	-	94	71.345	ENSAMXG00000030742	-	98	71.345
ENSAMXG00000029878	-	97	77.778	ENSAMXG00000029828	-	97	77.778
ENSAMXG00000029878	-	99	70.349	ENSAMXG00000032212	-	89	70.349
ENSAMXG00000029878	-	92	72.028	ENSAMXG00000035875	-	99	72.028
ENSAMXG00000029878	-	99	86.127	ENSAMXG00000025965	-	96	86.127
ENSAMXG00000029878	-	98	75.155	ENSAMXG00000003002	-	90	75.155
ENSAMXG00000029878	-	94	83.721	ENSAMXG00000018161	-	94	83.721
ENSAMXG00000029878	-	97	52.239	ENSAMXG00000033252	-	90	52.239
ENSAMXG00000029878	-	98	72.109	ENSAMXG00000030963	-	76	72.109
ENSAMXG00000029878	-	90	51.020	ENSAMXG00000016921	znf341	50	51.020
ENSAMXG00000029878	-	91	68.263	ENSAMXG00000042633	-	90	68.263
ENSAMXG00000029878	-	98	71.774	ENSAMXG00000029109	-	85	71.774
ENSAMXG00000029878	-	97	71.765	ENSAMXG00000043291	-	76	71.765
ENSAMXG00000029878	-	97	50.806	ENSAMXG00000035286	si:ch1073-224n8.1	83	50.806
ENSAMXG00000029878	-	99	54.706	ENSAMXG00000035127	-	89	53.254
ENSAMXG00000029878	-	92	71.519	ENSAMXG00000037717	-	94	71.519
ENSAMXG00000029878	-	99	60.494	ENSAMXG00000012873	-	92	61.310
ENSAMXG00000029878	-	96	64.706	ENSAMXG00000010805	-	99	64.706
ENSAMXG00000029878	-	94	67.647	ENSAMXG00000034402	-	91	67.647
ENSAMXG00000029878	-	91	73.054	ENSAMXG00000037326	-	89	73.054
ENSAMXG00000029878	-	91	74.497	ENSAMXG00000041721	-	66	74.497
ENSAMXG00000029878	-	99	84.302	ENSAMXG00000036762	-	99	84.302
ENSAMXG00000029878	-	96	86.747	ENSAMXG00000008613	-	98	86.747
ENSAMXG00000029878	-	92	81.395	ENSAMXG00000032457	-	91	81.395
ENSAMXG00000029878	-	91	84.076	ENSAMXG00000033500	-	91	84.076
ENSAMXG00000029878	-	98	66.667	ENSAMXG00000042593	-	93	66.667
ENSAMXG00000029878	-	92	67.262	ENSAMXG00000033201	-	94	67.262
ENSAMXG00000029878	-	99	86.471	ENSAMXG00000024978	-	99	86.471
ENSAMXG00000029878	-	98	73.404	ENSAMXG00000042167	-	91	73.404
ENSAMXG00000029878	-	99	87.432	ENSAMXG00000030911	-	60	87.432
ENSAMXG00000029878	-	95	57.225	ENSAMXG00000013492	-	98	53.061
ENSAMXG00000029878	-	92	71.257	ENSAMXG00000039700	-	91	71.257
ENSAMXG00000029878	-	92	80.588	ENSAMXG00000029178	-	96	80.588
ENSAMXG00000029878	-	96	84.667	ENSAMXG00000039879	-	98	84.667
ENSAMXG00000029878	-	92	64.901	ENSAMXG00000036633	-	62	64.935
ENSAMXG00000029878	-	97	77.059	ENSAMXG00000039004	-	88	77.059
ENSAMXG00000029878	-	99	83.529	ENSAMXG00000011804	-	90	83.529
ENSAMXG00000029878	-	93	46.259	ENSAMXG00000006669	GFI1	54	46.259
ENSAMXG00000029878	-	93	79.191	ENSAMXG00000031489	-	94	79.191
ENSAMXG00000029878	-	92	43.919	ENSAMXG00000025761	-	91	43.919
ENSAMXG00000029878	-	98	65.789	ENSAMXG00000034344	-	73	65.789
ENSAMXG00000029878	-	94	62.941	ENSAMXG00000030659	-	76	62.941
ENSAMXG00000029878	-	99	72.353	ENSAMXG00000039752	-	92	72.353
ENSAMXG00000029878	-	92	71.598	ENSAMXG00000035437	-	98	71.598
ENSAMXG00000029878	-	98	74.706	ENSAMXG00000034958	-	92	74.706
ENSAMXG00000029878	-	92	80.588	ENSAMXG00000035920	-	90	80.588
ENSAMXG00000029878	-	97	82.941	ENSAMXG00000038453	-	84	82.941
ENSAMXG00000029878	-	91	37.984	ENSAMXG00000038235	snai2	51	37.984
ENSAMXG00000029878	-	92	41.176	ENSAMXG00000029059	-	61	41.176
ENSAMXG00000029878	-	98	66.142	ENSAMXG00000037709	-	86	66.142
ENSAMXG00000029878	-	97	81.395	ENSAMXG00000037703	-	83	81.395
ENSAMXG00000029878	-	93	83.333	ENSAMXG00000031009	-	87	83.333
ENSAMXG00000029878	-	94	53.378	ENSAMXG00000014745	-	82	53.378
ENSAMXG00000029878	-	93	69.540	ENSAMXG00000009563	-	92	69.540
ENSAMXG00000029878	-	92	71.515	ENSAMXG00000040677	-	96	71.515
ENSAMXG00000029878	-	91	60.588	ENSAMXG00000042784	-	92	59.048
ENSAMXG00000029878	-	99	75.000	ENSAMXG00000009776	-	98	75.000
ENSAMXG00000029878	-	93	34.426	ENSAMXG00000038085	scrt1a	58	34.426
ENSAMXG00000029878	-	91	86.471	ENSAMXG00000043251	-	95	86.471
ENSAMXG00000029878	-	92	74.419	ENSAMXG00000039016	-	80	74.419
ENSAMXG00000029878	-	92	50.495	ENSAMXG00000034934	-	79	50.495
ENSAMXG00000029878	-	92	44.375	ENSAMXG00000041864	prdm5	87	44.375
ENSAMXG00000029878	-	92	45.503	ENSAMXG00000041862	-	90	45.503
ENSAMXG00000029878	-	99	77.778	ENSAMXG00000041861	-	87	77.778
ENSAMXG00000029878	-	94	60.795	ENSAMXG00000038905	-	88	60.795
ENSAMXG00000029878	-	92	71.429	ENSAMXG00000031496	-	87	71.429
ENSAMXG00000029878	-	92	87.349	ENSAMXG00000025455	-	98	87.349
ENSAMXG00000029878	-	99	75.882	ENSAMXG00000025452	-	99	75.882
ENSAMXG00000029878	-	97	61.364	ENSAMXG00000033124	-	59	61.364
ENSAMXG00000029878	-	99	61.765	ENSAMXG00000034096	-	88	61.765
ENSAMXG00000029878	-	92	76.879	ENSAMXG00000036233	-	83	76.879
ENSAMXG00000029878	-	92	67.123	ENSAMXG00000012604	-	95	67.123
ENSAMXG00000029878	-	92	84.971	ENSAMXG00000039744	-	99	84.971
ENSAMXG00000029878	-	90	69.091	ENSAMXG00000032841	-	75	69.091
ENSAMXG00000029878	-	96	43.636	ENSAMXG00000015228	-	73	43.636
ENSAMXG00000029878	-	92	75.163	ENSAMXG00000039432	-	95	75.163
ENSAMXG00000029878	-	92	45.946	ENSAMXG00000024907	znf319b	89	45.946
ENSAMXG00000029878	-	92	66.434	ENSAMXG00000013274	-	90	66.434
ENSAMXG00000029878	-	99	84.409	ENSAMXG00000041975	-	84	84.409
ENSAMXG00000029878	-	99	84.783	ENSAMXG00000009558	-	96	84.783
ENSAMXG00000029878	-	96	69.737	ENSAMXG00000041650	-	86	69.737
ENSAMXG00000029878	-	99	84.270	ENSAMXG00000035145	-	66	84.270
ENSAMXG00000029878	-	91	75.000	ENSAMXG00000041609	-	94	75.000
ENSAMXG00000029878	-	95	61.310	ENSAMXG00000036257	-	98	61.310
ENSAMXG00000029878	-	97	34.043	ENSAMXG00000039849	snai1b	58	34.043
ENSAMXG00000029878	-	92	74.843	ENSAMXG00000004610	-	96	75.758
ENSAMXG00000029878	-	92	73.418	ENSAMXG00000044107	-	87	73.418
ENSAMXG00000029878	-	92	76.871	ENSAMXG00000042774	-	90	76.871
ENSAMXG00000029878	-	90	42.222	ENSAMXG00000034873	-	80	43.299
ENSAMXG00000029878	-	92	72.892	ENSAMXG00000040630	-	97	71.098
ENSAMXG00000029878	-	92	74.510	ENSAMXG00000031794	-	96	74.510
ENSAMXG00000029878	-	99	81.176	ENSAMXG00000040212	-	89	81.176
ENSAMXG00000029878	-	99	86.022	ENSAMXG00000031501	-	92	86.022
ENSAMXG00000029878	-	99	80.503	ENSAMXG00000039182	-	67	80.503
ENSAMXG00000029878	-	92	69.737	ENSAMXG00000038280	-	86	69.737
ENSAMXG00000029878	-	92	60.694	ENSAMXG00000038284	-	95	60.694
ENSAMXG00000029878	-	90	64.881	ENSAMXG00000029960	-	94	64.881
ENSAMXG00000029878	-	92	71.257	ENSAMXG00000036849	-	87	71.257
ENSAMXG00000029878	-	92	73.026	ENSAMXG00000039408	-	88	73.026
ENSAMXG00000029878	-	99	81.600	ENSAMXG00000035949	-	78	81.600
ENSAMXG00000029878	-	90	43.293	ENSAMXG00000007441	-	57	43.293
ENSAMXG00000029878	-	92	61.047	ENSAMXG00000026143	-	93	61.047
ENSAMXG00000029878	-	93	72.941	ENSAMXG00000026142	-	89	72.941
ENSAMXG00000029878	-	92	63.253	ENSAMXG00000026144	-	92	63.253
ENSAMXG00000029878	-	99	72.941	ENSAMXG00000032619	-	99	72.941
ENSAMXG00000029878	-	99	80.214	ENSAMXG00000039162	-	98	80.214
ENSAMXG00000029878	-	93	36.264	ENSAMXG00000035525	znf646	68	36.264
ENSAMXG00000029878	-	90	81.169	ENSAMXG00000017609	-	73	81.169
ENSAMXG00000029878	-	92	62.353	ENSAMXG00000032237	-	92	62.353
ENSAMXG00000029878	-	90	58.108	ENSAMXG00000038122	-	93	58.108
ENSAMXG00000029878	-	99	80.645	ENSAMXG00000041865	-	99	80.645
ENSAMXG00000029878	-	94	69.412	ENSAMXG00000035683	-	91	69.412
ENSAMXG00000029878	-	98	62.353	ENSAMXG00000042746	-	91	62.353
ENSAMXG00000029878	-	92	73.214	ENSAMXG00000042938	-	86	73.214
ENSAMXG00000029878	-	93	67.630	ENSAMXG00000037143	-	94	67.630
ENSAMXG00000029878	-	99	83.815	ENSAMXG00000036567	-	77	83.815
ENSAMXG00000029878	-	99	80.978	ENSAMXG00000031646	-	76	80.978
ENSAMXG00000029878	-	99	68.047	ENSAMXG00000036915	-	95	68.047
ENSAMXG00000029878	-	91	68.387	ENSAMXG00000036241	-	79	68.387
ENSAMXG00000029878	-	99	76.875	ENSAMXG00000010078	-	89	76.875

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000029878	-	99	54.706	ENSAPLG00000012660	-	81	54.706	Anas_platyrhynchos
ENSAMXG00000029878	-	99	61.538	ENSEASG00005020341	-	94	61.538	Equus_asinus_asinus
ENSAMXG00000029878	-	99	61.538	ENSECAG00000017293	-	94	61.538	Equus_caballus
ENSAMXG00000029878	-	93	58.235	ENSECAG00000039445	-	92	58.235	Equus_caballus
ENSAMXG00000029878	-	92	63.043	ENSGAGG00000006683	-	92	63.030	Gopherus_agassizii
ENSAMXG00000029878	-	92	64.151	ENSGAGG00000009739	-	99	64.151	Gopherus_agassizii
ENSAMXG00000029878	-	99	60.588	ENSGAGG00000006960	-	82	60.588	Gopherus_agassizii
ENSAMXG00000029878	-	94	62.428	ENSGAGG00000011574	-	75	62.428	Gopherus_agassizii
ENSAMXG00000029878	-	95	65.116	ENSGAGG00000017986	-	90	64.706	Gopherus_agassizii
ENSAMXG00000029878	-	93	60.465	ENSGAGG00000000971	-	87	60.465	Gopherus_agassizii
ENSAMXG00000029878	-	91	61.765	ENSGAGG00000015451	-	90	61.765	Gopherus_agassizii
ENSAMXG00000029878	-	92	59.412	ENSGAGG00000019349	-	75	59.412	Gopherus_agassizii
ENSAMXG00000029878	-	94	67.133	ENSGAGG00000004740	-	90	58.824	Gopherus_agassizii
ENSAMXG00000029878	-	92	64.458	ENSGAGG00000008773	-	80	64.458	Gopherus_agassizii
ENSAMXG00000029878	-	95	73.143	ENSIPUG00000015400	-	93	75.294	Ictalurus_punctatus
ENSAMXG00000029878	-	91	69.412	ENSIPUG00000015177	-	56	69.412	Ictalurus_punctatus
ENSAMXG00000029878	-	91	57.647	ENSMPUG00000008437	-	87	57.647	Mustela_putorius_furo
ENSAMXG00000029878	-	97	61.628	ENSPTIG00000009259	-	96	61.628	Panthera_tigris_altaica
ENSAMXG00000029878	-	96	59.615	ENSPSIG00000016247	-	55	59.615	Pelodiscus_sinensis
ENSAMXG00000029878	-	92	75.882	ENSPNAG00000016045	-	66	75.882	Pygocentrus_nattereri
ENSAMXG00000029878	-	92	72.941	ENSPNAG00000002287	-	85	72.941	Pygocentrus_nattereri
ENSAMXG00000029878	-	93	68.800	ENSPNAG00000012366	-	90	68.800	Pygocentrus_nattereri
ENSAMXG00000029878	-	92	67.516	ENSPNAG00000017455	-	78	68.023	Pygocentrus_nattereri
ENSAMXG00000029878	-	92	73.548	ENSPNAG00000016025	-	88	73.548	Pygocentrus_nattereri
ENSAMXG00000029878	-	92	73.427	ENSPNAG00000012138	-	91	73.427	Pygocentrus_nattereri
ENSAMXG00000029878	-	91	58.940	ENSPNAG00000029386	-	89	57.647	Pygocentrus_nattereri
ENSAMXG00000029878	-	92	70.199	ENSPNAG00000024704	-	90	70.199	Pygocentrus_nattereri
ENSAMXG00000029878	-	96	70.455	ENSPNAG00000008653	-	95	76.471	Pygocentrus_nattereri
ENSAMXG00000029878	-	92	68.639	ENSPNAG00000017479	-	82	68.639	Pygocentrus_nattereri
ENSAMXG00000029878	-	92	73.410	ENSPNAG00000003919	-	91	73.410	Pygocentrus_nattereri
ENSAMXG00000029878	-	100	69.828	ENSPNAG00000028765	-	87	69.540	Pygocentrus_nattereri
ENSAMXG00000029878	-	92	63.529	ENSPNAG00000021942	-	92	63.529	Pygocentrus_nattereri
ENSAMXG00000029878	-	96	76.744	ENSPNAG00000003526	-	84	76.744	Pygocentrus_nattereri
ENSAMXG00000029878	-	94	65.185	ENSPNAG00000000783	-	86	63.218	Pygocentrus_nattereri
ENSAMXG00000029878	-	92	76.506	ENSPNAG00000018437	-	72	76.506	Pygocentrus_nattereri
ENSAMXG00000029878	-	93	74.419	ENSPNAG00000007072	-	88	74.419	Pygocentrus_nattereri
ENSAMXG00000029878	-	92	77.358	ENSPNAG00000018471	-	78	77.358	Pygocentrus_nattereri
ENSAMXG00000029878	-	94	68.023	ENSPNAG00000005914	-	73	68.023	Pygocentrus_nattereri
ENSAMXG00000029878	-	98	56.522	ENSUAMG00000027415	-	99	56.522	Ursus_americanus
ENSAMXG00000029878	-	99	56.395	ENSUAMG00000027384	-	87	56.395	Ursus_americanus
ENSAMXG00000029878	-	92	61.745	ENSVPAG00000002698	-	99	61.745	Vicugna_pacos