EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000030476 (Gene tree)
Gene ID: 103034457
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine and arginine rich splicing factor 5
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 9616 bases
Position: chr25:35018390-35028005
Accession: 103034457
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000028398	RRM_5	PF13893.6	5.6e-06	1	1
ENSAMXP00000028398	RRM_1	PF00076.22	2.4e-34	1	2
ENSAMXP00000028398	RRM_1	PF00076.22	2.4e-34	2	2
ENSAMXP00000028152	RRM_1	PF00076.22	3.9e-34	1	2
ENSAMXP00000028152	RRM_1	PF00076.22	3.9e-34	2	2
ENSAMXP00000028398	RRM_3	PF08777.11	4.6e-08	1	1
ENSAMXP00000028152	RRM_3	PF08777.11	4.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000031983	-	4274	XM_007247586	ENSAMXP00000028398	275 (aa)	XP_007247648	W5LQ67
ENSAMXT00000048043	-	792	-	ENSAMXP00000028152	263 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000030476's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG
amex05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000030476's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000030476	srsf5a	66	62.842	ENSAMXG00000042692	-	95	65.414
ENSAMXG00000030476	srsf5a	91	38.314	ENSAMXG00000032281	srsf9	69	42.135
ENSAMXG00000030476	srsf5a	62	44.886	ENSAMXG00000035996	srsf1a	67	45.000
ENSAMXG00000030476	srsf5a	67	71.351	ENSAMXG00000011932	srsf5b	84	70.543
ENSAMXG00000030476	srsf5a	95	47.126	ENSAMXG00000034811	srsf4	98	46.875

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000030476	srsf5a	67	86.631	ENSACIG00000011892	srsf5a	96	88.060	Amphilophus_citrinellus
ENSAMXG00000030476	srsf5a	67	88.108	ENSAOCG00000014967	srsf5a	62	87.831	Amphiprion_ocellaris
ENSAMXG00000030476	srsf5a	67	88.108	ENSAPEG00000009297	srsf5a	62	87.831	Amphiprion_percula
ENSAMXG00000030476	srsf5a	67	88.235	ENSATEG00000000198	srsf5a	100	65.398	Anabas_testudineus
ENSAMXG00000030476	srsf5a	67	78.610	ENSAPLG00000002469	-	70	78.075	Anas_platyrhynchos
ENSAMXG00000030476	srsf5a	67	77.297	ENSACAG00000029015	-	68	76.757	Anolis_carolinensis
ENSAMXG00000030476	srsf5a	67	83.246	ENSACLG00000027166	srsf5a	65	84.264	Astatotilapia_calliptera
ENSAMXG00000030476	srsf5a	67	81.183	ENSCPBG00000021518	-	70	80.645	Chrysemys_picta_bellii
ENSAMXG00000030476	srsf5a	67	55.612	ENSCSAVG00000011376	-	78	55.612	Ciona_savignyi
ENSAMXG00000030476	srsf5a	67	84.456	ENSCSEG00000008109	srsf5a	62	82.412	Cynoglossus_semilaevis
ENSAMXG00000030476	srsf5a	99	65.449	ENSCVAG00000016982	srsf5a	97	76.119	Cyprinodon_variegatus
ENSAMXG00000030476	srsf5a	94	84.170	ENSDARG00000029818	srsf5a	100	92.537	Danio_rerio
ENSAMXG00000030476	srsf5a	67	86.528	ENSELUG00000020439	srsf5a	62	89.119	Esox_lucius
ENSAMXG00000030476	srsf5a	67	79.459	ENSFALG00000005098	-	64	79.459	Ficedula_albicollis
ENSAMXG00000030476	srsf5a	57	88.235	ENSFHEG00000003955	srsf5a	97	69.655	Fundulus_heteroclitus
ENSAMXG00000030476	srsf5a	67	85.946	ENSGMOG00000000869	srsf5a	94	86.486	Gadus_morhua
ENSAMXG00000030476	srsf5a	67	79.459	ENSGALG00000033259	SRSF5A	63	78.378	Gallus_gallus
ENSAMXG00000030476	srsf5a	91	69.456	ENSGAFG00000018237	srsf5a	54	73.410	Gambusia_affinis
ENSAMXG00000030476	srsf5a	67	86.486	ENSGACG00000011761	srsf5a	70	86.486	Gasterosteus_aculeatus
ENSAMXG00000030476	srsf5a	67	81.183	ENSGAGG00000007312	-	70	80.645	Gopherus_agassizii
ENSAMXG00000030476	srsf5a	67	83.158	ENSHBUG00000014048	srsf5a	64	84.694	Haplochromis_burtoni
ENSAMXG00000030476	srsf5a	67	85.484	ENSHCOG00000017557	srsf5a	73	79.909	Hippocampus_comes
ENSAMXG00000030476	srsf5a	100	88.339	ENSIPUG00000003439	srsf5a	69	93.684	Ictalurus_punctatus
ENSAMXG00000030476	srsf5a	67	79.787	ENSKMAG00000014937	srsf5a	58	80.105	Kryptolebias_marmoratus
ENSAMXG00000030476	srsf5a	67	84.103	ENSLBEG00000017153	srsf5a	74	82.587	Labrus_bergylta
ENSAMXG00000030476	srsf5a	67	83.784	ENSLACG00000017874	-	70	84.324	Latimeria_chalumnae
ENSAMXG00000030476	srsf5a	67	90.811	ENSLOCG00000014075	srsf5a	61	90.811	Lepisosteus_oculatus
ENSAMXG00000030476	srsf5a	67	87.568	ENSMAMG00000000192	srsf5a	74	81.818	Mastacembelus_armatus
ENSAMXG00000030476	srsf5a	67	83.158	ENSMZEG00005010485	srsf5a	64	84.694	Maylandia_zebra
ENSAMXG00000030476	srsf5a	72	77.387	ENSMGAG00000011888	-	96	76.190	Meleagris_gallopavo
ENSAMXG00000030476	srsf5a	67	85.946	ENSMMOG00000009793	srsf5a	61	76.243	Mola_mola
ENSAMXG00000030476	srsf5a	67	80.541	ENSMALG00000021194	srsf5a	100	62.898	Monopterus_albus
ENSAMXG00000030476	srsf5a	67	84.127	ENSNBRG00000000771	srsf5a	64	85.128	Neolamprologus_brichardi
ENSAMXG00000030476	srsf5a	67	84.127	ENSONIG00000019583	srsf5a	64	85.128	Oreochromis_niloticus
ENSAMXG00000030476	srsf5a	67	85.946	ENSORLG00000009268	srsf5a	92	76.378	Oryzias_latipes
ENSAMXG00000030476	srsf5a	67	85.946	ENSORLG00020003281	srsf5	92	76.378	Oryzias_latipes_hni
ENSAMXG00000030476	srsf5a	68	85.106	ENSORLG00015023075	srsf5	92	76.378	Oryzias_latipes_hsok
ENSAMXG00000030476	srsf5a	67	86.486	ENSOMEG00000000628	srsf5a	66	87.027	Oryzias_melastigma
ENSAMXG00000030476	srsf5a	67	90.323	ENSPKIG00000002054	srsf5a	68	91.398	Paramormyrops_kingsleyae
ENSAMXG00000030476	srsf5a	67	80.108	ENSPSIG00000008238	-	69	77.957	Pelodiscus_sinensis
ENSAMXG00000030476	srsf5a	68	82.888	ENSPMGG00000020125	srsf5a	55	83.243	Periophthalmus_magnuspinnatus
ENSAMXG00000030476	srsf5a	91	66.537	ENSPFOG00000022993	srsf5a	60	77.551	Poecilia_formosa
ENSAMXG00000030476	srsf5a	67	78.421	ENSPLAG00000005508	srsf5a	59	77.436	Poecilia_latipinna
ENSAMXG00000030476	srsf5a	91	66.537	ENSPMEG00000016339	srsf5a	60	77.551	Poecilia_mexicana
ENSAMXG00000030476	srsf5a	91	74.806	ENSPREG00000018091	srsf5a	61	77.157	Poecilia_reticulata
ENSAMXG00000030476	srsf5a	67	83.158	ENSPNYG00000021245	srsf5a	64	84.694	Pundamilia_nyererei
ENSAMXG00000030476	srsf5a	67	95.676	ENSPNAG00000021333	srsf5a	100	79.004	Pygocentrus_nattereri
ENSAMXG00000030476	srsf5a	89	84.898	ENSSFOG00015008377	srsf5	66	92.473	Scleropages_formosus
ENSAMXG00000030476	srsf5a	67	82.500	ENSSMAG00000010899	srsf5a	66	82.500	Scophthalmus_maximus
ENSAMXG00000030476	srsf5a	67	88.108	ENSSDUG00000006103	srsf5a	92	65.799	Seriola_dumerili
ENSAMXG00000030476	srsf5a	67	88.108	ENSSLDG00000004146	srsf5a	92	65.799	Seriola_lalandi_dorsalis
ENSAMXG00000030476	srsf5a	94	63.602	ENSSPUG00000002052	-	68	74.054	Sphenodon_punctatus
ENSAMXG00000030476	srsf5a	67	88.108	ENSSPAG00000002821	srsf5a	63	75.000	Stegastes_partitus
ENSAMXG00000030476	srsf5a	67	80.000	ENSTGUG00000011492	-	68	79.459	Taeniopygia_guttata
ENSAMXG00000030476	srsf5a	67	80.208	ENSTRUG00000022908	srsf5a	73	79.279	Takifugu_rubripes
ENSAMXG00000030476	srsf5a	72	78.607	ENSXETG00000017937	srsf5a	72	82.540	Xenopus_tropicalis
ENSAMXG00000030476	srsf5a	91	58.498	ENSXCOG00000015338	srsf5a	61	74.874	Xiphophorus_couchianus
ENSAMXG00000030476	srsf5a	91	65.251	ENSXMAG00000012823	srsf5a	61	76.768	Xiphophorus_maculatus