EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000031647 (Gene tree)
Gene ID: 103032556
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 5974 bases
Position: chr23:32978656-32984629
Accession: 103032556
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000031968	zf-CCCH	PF00642.24	2.9e-18	1	1
ENSAMXP00000048757	zf-CCCH	PF00642.24	4e-18	1	1
ENSAMXP00000036138	zf-CCCH	PF00642.24	2.6e-13	1	1
ENSAMXP00000036138	zf-CCHC	PF00098.23	3.7e-06	1	1
ENSAMXP00000048757	zf-CCHC	PF00098.23	5.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000051334	-	1667	XM_007247828	ENSAMXP00000048757	270 (aa)	XP_007247890	UPI000BBD9287
ENSAMXT00000049818	-	2231	-	ENSAMXP00000031968	255 (aa)	-	-
ENSAMXT00000047980	-	606	-	ENSAMXP00000036138	201 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000031647's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000031647's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000031647	cpsf4	100	85.978	ENSG00000160917	CPSF4	100	97.321	Homo_sapiens
ENSAMXG00000031647	cpsf4	67	74.176	ENSAPOG00000004921	cpsf4	100	74.176	Acanthochromis_polyacanthus
ENSAMXG00000031647	cpsf4	100	85.978	ENSAMEG00000006252	CPSF4	100	85.240	Ailuropoda_melanoleuca
ENSAMXG00000031647	cpsf4	100	80.370	ENSACIG00000009248	cpsf4	100	80.000	Amphilophus_citrinellus
ENSAMXG00000031647	cpsf4	100	85.556	ENSAOCG00000019616	cpsf4	100	85.556	Amphiprion_ocellaris
ENSAMXG00000031647	cpsf4	100	85.556	ENSAPEG00000011679	cpsf4	100	85.556	Amphiprion_percula
ENSAMXG00000031647	cpsf4	100	84.815	ENSATEG00000007010	cpsf4	100	84.815	Anabas_testudineus
ENSAMXG00000031647	cpsf4	100	82.288	ENSACAG00000012941	CPSF4	89	83.395	Anolis_carolinensis
ENSAMXG00000031647	cpsf4	100	85.978	ENSANAG00000021360	CPSF4	100	85.782	Aotus_nancymaae
ENSAMXG00000031647	cpsf4	100	83.394	ENSACLG00000010374	cpsf4	100	84.815	Astatotilapia_calliptera
ENSAMXG00000031647	cpsf4	100	80.741	ENSBTAG00000002090	CPSF4	100	80.370	Bos_taurus
ENSAMXG00000031647	cpsf4	100	85.978	ENSCJAG00000015826	CPSF4	100	85.782	Callithrix_jacchus
ENSAMXG00000031647	cpsf4	100	85.978	ENSCAFG00000015036	CPSF4	100	85.377	Canis_familiaris
ENSAMXG00000031647	cpsf4	100	80.812	ENSCAFG00020014462	CPSF4	100	80.074	Canis_lupus_dingo
ENSAMXG00000031647	cpsf4	100	86.347	ENSCHIG00000014313	CPSF4	100	86.256	Capra_hircus
ENSAMXG00000031647	cpsf4	89	74.380	ENSTSYG00000008195	-	100	77.348	Carlito_syrichta
ENSAMXG00000031647	cpsf4	100	73.832	ENSTSYG00000014604	-	100	76.526	Carlito_syrichta
ENSAMXG00000031647	cpsf4	100	84.906	ENSTSYG00000005712	-	100	86.256	Carlito_syrichta
ENSAMXG00000031647	cpsf4	83	83.929	ENSCAPG00000013881	CPSF4	88	83.036	Cavia_aperea
ENSAMXG00000031647	cpsf4	100	86.256	ENSCPOG00000001783	CPSF4	100	85.782	Cavia_porcellus
ENSAMXG00000031647	cpsf4	100	85.978	ENSCCAG00000028291	CPSF4	100	85.782	Cebus_capucinus
ENSAMXG00000031647	cpsf4	100	85.978	ENSCATG00000038440	CPSF4	100	85.782	Cercocebus_atys
ENSAMXG00000031647	cpsf4	100	86.256	ENSCLAG00000007050	CPSF4	100	85.782	Chinchilla_lanigera
ENSAMXG00000031647	cpsf4	100	85.978	ENSCSAG00000017795	CPSF4	100	85.240	Chlorocebus_sabaeus
ENSAMXG00000031647	cpsf4	80	80.734	ENSCPBG00000020869	CPSF4	100	83.028	Chrysemys_picta_bellii
ENSAMXG00000031647	cpsf4	65	80.120	ENSCPBG00000010269	-	100	80.120	Chrysemys_picta_bellii
ENSAMXG00000031647	cpsf4	97	55.939	ENSCING00000021080	-	97	56.489	Ciona_intestinalis
ENSAMXG00000031647	cpsf4	97	53.137	ENSCSAVG00000011469	-	97	53.710	Ciona_savignyi
ENSAMXG00000031647	cpsf4	100	85.978	ENSCANG00000019384	CPSF4	100	85.782	Colobus_angolensis_palliatus
ENSAMXG00000031647	cpsf4	100	86.256	ENSCGRG00001024184	Cpsf4	100	85.782	Cricetulus_griseus_chok1gshd
ENSAMXG00000031647	cpsf4	100	86.256	ENSCGRG00000013892	Cpsf4	100	85.782	Cricetulus_griseus_crigri
ENSAMXG00000031647	cpsf4	100	86.730	ENSCSEG00000019055	cpsf4	100	86.730	Cynoglossus_semilaevis
ENSAMXG00000031647	cpsf4	100	84.815	ENSCVAG00000016528	cpsf4	100	84.815	Cyprinodon_variegatus
ENSAMXG00000031647	cpsf4	100	88.561	ENSDARG00000020217	cpsf4	100	88.930	Danio_rerio
ENSAMXG00000031647	cpsf4	100	85.978	ENSDNOG00000006344	CPSF4	100	85.240	Dasypus_novemcinctus
ENSAMXG00000031647	cpsf4	81	84.932	ENSDORG00000000742	Cpsf4	100	84.018	Dipodomys_ordii
ENSAMXG00000031647	cpsf4	100	54.181	FBgn0015621	Clp	99	53.846	Drosophila_melanogaster
ENSAMXG00000031647	cpsf4	77	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSAMXG00000031647	cpsf4	99	64.925	ENSEBUG00000012552	cpsf4	98	64.925	Eptatretus_burgeri
ENSAMXG00000031647	cpsf4	100	80.741	ENSEASG00005002487	CPSF4	100	79.630	Equus_asinus_asinus
ENSAMXG00000031647	cpsf4	100	86.256	ENSECAG00000007525	CPSF4	100	85.782	Equus_caballus
ENSAMXG00000031647	cpsf4	67	97.015	ENSEEUG00000002158	CPSF4	73	97.015	Erinaceus_europaeus
ENSAMXG00000031647	cpsf4	100	86.813	ENSELUG00000011481	cpsf4	100	86.813	Esox_lucius
ENSAMXG00000031647	cpsf4	100	86.256	ENSFCAG00000015070	CPSF4	100	85.782	Felis_catus
ENSAMXG00000031647	cpsf4	65	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSAMXG00000031647	cpsf4	100	80.741	ENSFALG00000013799	CPSF4	100	79.259	Ficedula_albicollis
ENSAMXG00000031647	cpsf4	90	84.898	ENSFDAG00000014092	CPSF4	100	84.324	Fukomys_damarensis
ENSAMXG00000031647	cpsf4	100	83.704	ENSFHEG00000010880	cpsf4	100	83.704	Fundulus_heteroclitus
ENSAMXG00000031647	cpsf4	100	81.250	ENSGMOG00000002330	cpsf4	100	81.250	Gadus_morhua
ENSAMXG00000031647	cpsf4	99	35.602	ENSGALG00000004441	-	98	35.417	Gallus_gallus
ENSAMXG00000031647	cpsf4	100	81.111	ENSGALG00000004714	CPSF4	100	80.370	Gallus_gallus
ENSAMXG00000031647	cpsf4	100	83.696	ENSGAFG00000010580	cpsf4	100	82.609	Gambusia_affinis
ENSAMXG00000031647	cpsf4	100	80.515	ENSGACG00000007792	cpsf4	100	78.676	Gasterosteus_aculeatus
ENSAMXG00000031647	cpsf4	100	82.657	ENSGAGG00000021835	CPSF4	100	84.502	Gopherus_agassizii
ENSAMXG00000031647	cpsf4	71	76.374	ENSGAGG00000020579	-	100	76.374	Gopherus_agassizii
ENSAMXG00000031647	cpsf4	100	85.978	ENSGGOG00000015131	CPSF4	100	85.782	Gorilla_gorilla
ENSAMXG00000031647	cpsf4	100	83.394	ENSHBUG00000013699	cpsf4	100	84.815	Haplochromis_burtoni
ENSAMXG00000031647	cpsf4	100	85.782	ENSHGLG00000017150	CPSF4	100	85.308	Heterocephalus_glaber_female
ENSAMXG00000031647	cpsf4	100	69.652	ENSHGLG00100017302	-	100	69.652	Heterocephalus_glaber_male
ENSAMXG00000031647	cpsf4	87	82.278	ENSHGLG00100009215	-	100	81.857	Heterocephalus_glaber_male
ENSAMXG00000031647	cpsf4	100	83.333	ENSHCOG00000004397	cpsf4	100	83.333	Hippocampus_comes
ENSAMXG00000031647	cpsf4	100	90.406	ENSIPUG00000017147	cpsf4	100	90.406	Ictalurus_punctatus
ENSAMXG00000031647	cpsf4	100	86.256	ENSSTOG00000001688	CPSF4	100	85.782	Ictidomys_tridecemlineatus
ENSAMXG00000031647	cpsf4	100	86.256	ENSJJAG00000019426	Cpsf4	100	85.782	Jaculus_jaculus
ENSAMXG00000031647	cpsf4	100	82.222	ENSKMAG00000015642	cpsf4	100	82.222	Kryptolebias_marmoratus
ENSAMXG00000031647	cpsf4	100	60.148	ENSLACG00000018470	-	100	60.148	Latimeria_chalumnae
ENSAMXG00000031647	cpsf4	100	84.815	ENSLACG00000010938	CPSF4	100	84.815	Latimeria_chalumnae
ENSAMXG00000031647	cpsf4	100	87.037	ENSLOCG00000004814	cpsf4	100	87.037	Lepisosteus_oculatus
ENSAMXG00000031647	cpsf4	100	85.609	ENSLAFG00000000159	CPSF4	100	84.871	Loxodonta_africana
ENSAMXG00000031647	cpsf4	100	85.978	ENSMFAG00000001462	CPSF4	100	85.782	Macaca_fascicularis
ENSAMXG00000031647	cpsf4	100	85.978	ENSMMUG00000019191	CPSF4	100	85.782	Macaca_mulatta
ENSAMXG00000031647	cpsf4	100	85.978	ENSMNEG00000032306	CPSF4	100	85.782	Macaca_nemestrina
ENSAMXG00000031647	cpsf4	100	85.978	ENSMLEG00000034721	CPSF4	100	85.782	Mandrillus_leucophaeus
ENSAMXG00000031647	cpsf4	100	84.815	ENSMAMG00000006244	cpsf4	100	84.815	Mastacembelus_armatus
ENSAMXG00000031647	cpsf4	100	83.394	ENSMZEG00005007515	cpsf4	100	84.815	Maylandia_zebra
ENSAMXG00000031647	cpsf4	87	79.237	ENSMGAG00000004235	CPSF4	100	78.390	Meleagris_gallopavo
ENSAMXG00000031647	cpsf4	100	86.256	ENSMAUG00000021253	Cpsf4	100	85.782	Mesocricetus_auratus
ENSAMXG00000031647	cpsf4	100	85.978	ENSMICG00000017429	CPSF4	100	85.782	Microcebus_murinus
ENSAMXG00000031647	cpsf4	100	86.256	ENSMOCG00000014901	Cpsf4	100	85.782	Microtus_ochrogaster
ENSAMXG00000031647	cpsf4	100	90.547	ENSMMOG00000001813	cpsf4	100	90.547	Mola_mola
ENSAMXG00000031647	cpsf4	100	86.716	ENSMODG00000001367	CPSF4	100	85.609	Monodelphis_domestica
ENSAMXG00000031647	cpsf4	100	84.815	ENSMALG00000012611	cpsf4	100	84.815	Monopterus_albus
ENSAMXG00000031647	cpsf4	100	86.256	MGP_CAROLIEiJ_G0028012	Cpsf4	100	85.782	Mus_caroli
ENSAMXG00000031647	cpsf4	100	86.256	ENSMUSG00000029625	Cpsf4	100	85.782	Mus_musculus
ENSAMXG00000031647	cpsf4	100	86.256	MGP_PahariEiJ_G0024581	Cpsf4	100	85.782	Mus_pahari
ENSAMXG00000031647	cpsf4	100	86.256	MGP_SPRETEiJ_G0029013	Cpsf4	100	85.782	Mus_spretus
ENSAMXG00000031647	cpsf4	100	85.978	ENSMPUG00000016508	CPSF4	100	85.240	Mustela_putorius_furo
ENSAMXG00000031647	cpsf4	87	78.390	ENSMLUG00000010980	CPSF4	100	77.542	Myotis_lucifugus
ENSAMXG00000031647	cpsf4	100	86.256	ENSNGAG00000001567	Cpsf4	100	85.782	Nannospalax_galili
ENSAMXG00000031647	cpsf4	91	82.609	ENSNBRG00000003943	cpsf4	98	82.609	Neolamprologus_brichardi
ENSAMXG00000031647	cpsf4	100	84.434	ENSNLEG00000011074	CPSF4	100	85.782	Nomascus_leucogenys
ENSAMXG00000031647	cpsf4	100	86.716	ENSMEUG00000006955	CPSF4	100	85.609	Notamacropus_eugenii
ENSAMXG00000031647	cpsf4	100	85.609	ENSOPRG00000013663	CPSF4	100	84.871	Ochotona_princeps
ENSAMXG00000031647	cpsf4	100	66.545	ENSODEG00000009779	-	100	65.818	Octodon_degus
ENSAMXG00000031647	cpsf4	99	68.421	ENSODEG00000018283	-	91	67.293	Octodon_degus
ENSAMXG00000031647	cpsf4	100	86.256	ENSODEG00000011181	-	100	85.782	Octodon_degus
ENSAMXG00000031647	cpsf4	100	84.815	ENSONIG00000008495	cpsf4	100	84.815	Oreochromis_niloticus
ENSAMXG00000031647	cpsf4	87	83.966	ENSOANG00000007729	CPSF4	100	83.122	Ornithorhynchus_anatinus
ENSAMXG00000031647	cpsf4	100	53.237	ENSOANG00000009568	-	100	52.669	Ornithorhynchus_anatinus
ENSAMXG00000031647	cpsf4	100	85.609	ENSOCUG00000002437	CPSF4	70	84.871	Oryctolagus_cuniculus
ENSAMXG00000031647	cpsf4	100	84.058	ENSORLG00000022798	cpsf4	100	84.074	Oryzias_latipes
ENSAMXG00000031647	cpsf4	100	84.058	ENSORLG00020008548	cpsf4	100	84.074	Oryzias_latipes_hni
ENSAMXG00000031647	cpsf4	100	83.696	ENSORLG00015019575	cpsf4	100	83.704	Oryzias_latipes_hsok
ENSAMXG00000031647	cpsf4	100	87.500	ENSOMEG00000005176	cpsf4	100	85.096	Oryzias_melastigma
ENSAMXG00000031647	cpsf4	100	85.978	ENSOGAG00000010884	CPSF4	100	85.240	Otolemur_garnettii
ENSAMXG00000031647	cpsf4	100	75.273	ENSOARG00000018668	CPSF4	100	75.273	Ovis_aries
ENSAMXG00000031647	cpsf4	100	85.978	ENSPPAG00000043355	CPSF4	100	85.782	Pan_paniscus
ENSAMXG00000031647	cpsf4	100	86.256	ENSPPRG00000003134	CPSF4	100	85.782	Panthera_pardus
ENSAMXG00000031647	cpsf4	90	85.656	ENSPTIG00000005604	CPSF4	90	84.836	Panthera_tigris_altaica
ENSAMXG00000031647	cpsf4	100	85.978	ENSPTRG00000019453	CPSF4	100	85.782	Pan_troglodytes
ENSAMXG00000031647	cpsf4	100	85.978	ENSPANG00000023123	CPSF4	100	85.782	Papio_anubis
ENSAMXG00000031647	cpsf4	100	85.766	ENSPKIG00000014278	cpsf4	100	85.766	Paramormyrops_kingsleyae
ENSAMXG00000031647	cpsf4	81	56.364	ENSPSIG00000018198	-	100	56.364	Pelodiscus_sinensis
ENSAMXG00000031647	cpsf4	80	80.275	ENSPSIG00000011229	CPSF4	100	82.569	Pelodiscus_sinensis
ENSAMXG00000031647	cpsf4	100	74.444	ENSPMGG00000017735	cpsf4	100	74.444	Periophthalmus_magnuspinnatus
ENSAMXG00000031647	cpsf4	100	86.256	ENSPEMG00000004508	Cpsf4	100	85.782	Peromyscus_maniculatus_bairdii
ENSAMXG00000031647	cpsf4	100	86.716	ENSPCIG00000024776	CPSF4	100	85.609	Phascolarctos_cinereus
ENSAMXG00000031647	cpsf4	100	83.696	ENSPFOG00000014912	cpsf4	100	82.609	Poecilia_formosa
ENSAMXG00000031647	cpsf4	100	76.812	ENSPLAG00000009599	cpsf4	100	76.812	Poecilia_latipinna
ENSAMXG00000031647	cpsf4	100	83.696	ENSPMEG00000009790	cpsf4	100	82.609	Poecilia_mexicana
ENSAMXG00000031647	cpsf4	100	82.971	ENSPREG00000018166	cpsf4	100	81.884	Poecilia_reticulata
ENSAMXG00000031647	cpsf4	87	84.746	ENSPPYG00000017378	CPSF4	100	83.898	Pongo_abelii
ENSAMXG00000031647	cpsf4	100	85.609	ENSPCAG00000001892	CPSF4	100	84.871	Procavia_capensis
ENSAMXG00000031647	cpsf4	100	85.978	ENSPCOG00000012771	CPSF4	100	85.782	Propithecus_coquereli
ENSAMXG00000031647	cpsf4	100	80.074	ENSPVAG00000007531	CPSF4	100	79.336	Pteropus_vampyrus
ENSAMXG00000031647	cpsf4	100	83.394	ENSPNYG00000018559	cpsf4	100	84.815	Pundamilia_nyererei
ENSAMXG00000031647	cpsf4	100	91.852	ENSPNAG00000003736	cpsf4	100	91.852	Pygocentrus_nattereri
ENSAMXG00000031647	cpsf4	100	86.256	ENSRNOG00000000985	Cpsf4	100	85.782	Rattus_norvegicus
ENSAMXG00000031647	cpsf4	87	85.169	ENSRBIG00000033886	CPSF4	100	84.659	Rhinopithecus_bieti
ENSAMXG00000031647	cpsf4	100	84.434	ENSRROG00000040431	CPSF4	100	85.782	Rhinopithecus_roxellana
ENSAMXG00000031647	cpsf4	100	85.978	ENSSBOG00000020493	CPSF4	100	85.782	Saimiri_boliviensis_boliviensis
ENSAMXG00000031647	cpsf4	100	86.716	ENSSHAG00000011533	CPSF4	100	85.609	Sarcophilus_harrisii
ENSAMXG00000031647	cpsf4	100	86.594	ENSSFOG00015007883	cpsf4	100	86.594	Scleropages_formosus
ENSAMXG00000031647	cpsf4	100	79.630	ENSSMAG00000006374	cpsf4	100	79.259	Scophthalmus_maximus
ENSAMXG00000031647	cpsf4	100	86.296	ENSSDUG00000018887	cpsf4	100	86.296	Seriola_dumerili
ENSAMXG00000031647	cpsf4	100	86.296	ENSSLDG00000019078	cpsf4	100	86.296	Seriola_lalandi_dorsalis
ENSAMXG00000031647	cpsf4	87	85.169	ENSSARG00000012416	CPSF4	100	84.322	Sorex_araneus
ENSAMXG00000031647	cpsf4	100	86.347	ENSSPUG00000003549	CPSF4	100	84.871	Sphenodon_punctatus
ENSAMXG00000031647	cpsf4	96	57.529	ENSSPUG00000014803	-	97	57.143	Sphenodon_punctatus
ENSAMXG00000031647	cpsf4	100	81.111	ENSSPAG00000006174	cpsf4	100	81.111	Stegastes_partitus
ENSAMXG00000031647	cpsf4	100	80.741	ENSSSCG00000026896	CPSF4	100	79.630	Sus_scrofa
ENSAMXG00000031647	cpsf4	100	79.779	ENSTGUG00000007552	CPSF4	100	78.309	Taeniopygia_guttata
ENSAMXG00000031647	cpsf4	100	83.333	ENSTRUG00000024220	cpsf4	100	81.852	Takifugu_rubripes
ENSAMXG00000031647	cpsf4	100	84.074	ENSTNIG00000006265	cpsf4	100	82.593	Tetraodon_nigroviridis
ENSAMXG00000031647	cpsf4	87	75.847	ENSTBEG00000011406	CPSF4	100	75.000	Tupaia_belangeri
ENSAMXG00000031647	cpsf4	83	95.455	ENSTTRG00000003007	CPSF4	76	95.604	Tursiops_truncatus
ENSAMXG00000031647	cpsf4	98	79.116	ENSUAMG00000008051	CPSF4	86	78.400	Ursus_americanus
ENSAMXG00000031647	cpsf4	100	80.370	ENSUMAG00000009474	CPSF4	100	80.000	Ursus_maritimus
ENSAMXG00000031647	cpsf4	100	80.741	ENSVVUG00000008824	CPSF4	100	79.630	Vulpes_vulpes
ENSAMXG00000031647	cpsf4	100	82.143	ENSXETG00000009892	cpsf4	100	82.143	Xenopus_tropicalis
ENSAMXG00000031647	cpsf4	99	59.191	ENSXETG00000004641	cpsf4l	99	59.191	Xenopus_tropicalis
ENSAMXG00000031647	cpsf4	100	86.730	ENSXCOG00000016040	cpsf4	100	86.730	Xiphophorus_couchianus
ENSAMXG00000031647	cpsf4	100	83.696	ENSXMAG00000024670	cpsf4	100	82.609	Xiphophorus_maculatus