EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000031810 (Gene tree)
Gene ID: 103021424
Gene Symbol: -
Alias: -
Full Name: RNA polymerase II subunit K
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 3559 bases
Position: chr23:11551567-11555125
Accession: 103021424
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000033680	DNA_RNApol_7kD	PF03604.13	5.2e-17	1	1
ENSAMXP00000049785	DNA_RNApol_7kD	PF03604.13	2.8e-16	1	1
ENSAMXP00000054161	DNA_RNApol_7kD	PF03604.13	2.8e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000035759	-	1399	XM_015608077	ENSAMXP00000033680	58 (aa)	XP_015463563	W5KMJ0
ENSAMXT00000035248	-	1981	-	ENSAMXP00000054161	109 (aa)	-	-
ENSAMXT00000039128	-	1665	-	ENSAMXP00000049785	109 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000031810's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03020	RNA polymerase	KEGG
amex04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000031810's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000031810	-	100	75.000	ENSAMXG00000038868	-	100	75.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000031810	-	95	90.909	ENSACIG00000016512	-	86	96.296	Amphilophus_citrinellus
ENSAMXG00000031810	-	100	94.828	ENSANAG00000030050	-	100	94.828	Aotus_nancymaae
ENSAMXG00000031810	-	95	89.091	ENSACLG00000014734	-	100	87.302	Astatotilapia_calliptera
ENSAMXG00000031810	-	100	94.828	ENSCJAG00000047602	-	100	94.828	Callithrix_jacchus
ENSAMXG00000031810	-	100	94.828	ENSTSYG00000003640	-	100	94.828	Carlito_syrichta
ENSAMXG00000031810	-	95	89.091	ENSCPBG00000008066	-	75	96.296	Chrysemys_picta_bellii
ENSAMXG00000031810	-	95	87.273	ENSDNOG00000007079	-	81	94.444	Dasypus_novemcinctus
ENSAMXG00000031810	-	86	70.000	ENSECAG00000034173	-	53	70.000	Equus_caballus
ENSAMXG00000031810	-	100	94.828	ENSFCAG00000039453	-	100	94.828	Felis_catus
ENSAMXG00000031810	-	98	89.474	ENSIPUG00000011172	-	79	96.296	Ictalurus_punctatus
ENSAMXG00000031810	-	100	94.828	ENSMFAG00000002096	-	100	94.828	Macaca_fascicularis
ENSAMXG00000031810	-	100	94.828	ENSMNEG00000042506	-	100	94.828	Macaca_nemestrina
ENSAMXG00000031810	-	95	89.091	ENSMGAG00000012237	-	93	96.296	Meleagris_gallopavo
ENSAMXG00000031810	-	95	89.091	ENSMALG00000005711	-	78	96.296	Monopterus_albus
ENSAMXG00000031810	-	100	94.828	ENSNLEG00000002993	-	100	94.828	Nomascus_leucogenys
ENSAMXG00000031810	-	95	87.273	ENSOANG00000028409	-	92	70.513	Ornithorhynchus_anatinus
ENSAMXG00000031810	-	95	89.091	ENSORLG00000002783	-	98	81.538	Oryzias_latipes
ENSAMXG00000031810	-	95	91.071	ENSORLG00020022085	-	58	96.296	Oryzias_latipes_hni
ENSAMXG00000031810	-	95	89.091	ENSOMEG00000013273	-	99	81.159	Oryzias_melastigma
ENSAMXG00000031810	-	95	87.273	ENSOGAG00000008422	-	81	92.593	Otolemur_garnettii
ENSAMXG00000031810	-	100	94.828	ENSPPRG00000024679	-	100	94.828	Panthera_pardus
ENSAMXG00000031810	-	100	94.828	ENSPTIG00000020210	-	100	94.828	Panthera_tigris_altaica
ENSAMXG00000031810	-	98	84.211	ENSPANG00000031381	-	81	94.444	Papio_anubis
ENSAMXG00000031810	-	93	90.741	ENSPKIG00000005853	-	82	94.545	Paramormyrops_kingsleyae
ENSAMXG00000031810	-	100	94.828	ENSPCIG00000000145	POLR2K	100	94.828	Phascolarctos_cinereus
ENSAMXG00000031810	-	93	90.741	ENSPFOG00000014835	-	100	96.296	Poecilia_formosa
ENSAMXG00000031810	-	95	90.909	ENSPLAG00000003022	-	79	96.296	Poecilia_latipinna
ENSAMXG00000031810	-	95	90.909	ENSPREG00000008685	-	73	94.444	Poecilia_reticulata
ENSAMXG00000031810	-	100	94.828	ENSPCOG00000019331	-	100	94.828	Propithecus_coquereli
ENSAMXG00000031810	-	100	94.828	ENSSBOG00000022710	-	100	94.828	Saimiri_boliviensis_boliviensis
ENSAMXG00000031810	-	93	90.741	ENSSDUG00000011754	-	100	96.296	Seriola_dumerili
ENSAMXG00000031810	-	98	87.719	ENSSPAG00000019554	-	92	96.296	Stegastes_partitus
ENSAMXG00000031810	-	98	84.211	ENSTRUG00000023920	-	69	86.441	Takifugu_rubripes
ENSAMXG00000031810	-	98	84.211	ENSVVUG00000013043	-	92	94.444	Vulpes_vulpes
ENSAMXG00000031810	-	95	90.909	ENSXCOG00000020048	-	82	96.296	Xiphophorus_couchianus
ENSAMXG00000031810	-	95	90.909	ENSXMAG00000003702	-	78	96.296	Xiphophorus_maculatus