EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000032452 (Gene tree)
Gene ID: 103023399
Gene Symbol: casc3
Alias: -
Full Name: CASC3%2C exon junction complex subunit
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 13118 bases
Position: chrAPWO02000145.1:1770318-1783435
Accession: 103023399
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000054702	Btz	PF09405.10	5.7e-21	1	1
ENSAMXP00000039699	Btz	PF09405.10	7.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000039927	-	5784	XM_022668468	ENSAMXP00000054702	758 (aa)	XP_022524189	UPI000BBD9B9F
ENSAMXT00000046653	-	6420	-	ENSAMXP00000039699	722 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000032452's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03013	RNA transport	KEGG
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000032452's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000032452	casc3	78	69.180	ENSACIG00000000720	casc3	90	68.197	Amphilophus_citrinellus
ENSAMXG00000032452	casc3	94	56.842	ENSAOCG00000016676	casc3	99	58.883	Amphiprion_ocellaris
ENSAMXG00000032452	casc3	94	57.219	ENSAPEG00000006787	casc3	99	58.929	Amphiprion_percula
ENSAMXG00000032452	casc3	94	44.772	ENSACAG00000002674	CASC3	92	45.384	Anolis_carolinensis
ENSAMXG00000032452	casc3	74	56.410	ENSANAG00000034820	-	88	58.333	Aotus_nancymaae
ENSAMXG00000032452	casc3	60	65.550	ENSANAG00000031954	-	83	68.421	Aotus_nancymaae
ENSAMXG00000032452	casc3	77	56.646	ENSCAFG00020018882	CASC3	81	60.191	Canis_lupus_dingo
ENSAMXG00000032452	casc3	99	43.774	ENSCHIG00000006338	CASC3	90	46.751	Capra_hircus
ENSAMXG00000032452	casc3	56	69.403	ENSCAPG00000010514	CASC3	80	58.280	Cavia_aperea
ENSAMXG00000032452	casc3	75	55.096	ENSCPOG00000015139	CASC3	73	58.730	Cavia_porcellus
ENSAMXG00000032452	casc3	75	57.643	ENSCCAG00000033620	CASC3	72	59.554	Cebus_capucinus
ENSAMXG00000032452	casc3	61	54.717	ENSCATG00000033593	CASC3	65	55.804	Cercocebus_atys
ENSAMXG00000032452	casc3	98	47.089	ENSCPBG00000004750	CASC3	95	48.808	Chrysemys_picta_bellii
ENSAMXG00000032452	casc3	82	56.740	ENSCGRG00001014706	Casc3	90	47.905	Cricetulus_griseus_chok1gshd
ENSAMXG00000032452	casc3	82	56.740	ENSCGRG00000001952	Casc3	78	58.621	Cricetulus_griseus_crigri
ENSAMXG00000032452	casc3	100	75.131	ENSDARG00000029911	casc3	100	75.916	Danio_rerio
ENSAMXG00000032452	casc3	99	46.046	ENSDNOG00000017249	CASC3	86	49.088	Dasypus_novemcinctus
ENSAMXG00000032452	casc3	75	41.727	ENSEBUG00000010654	casc3	77	38.115	Eptatretus_burgeri
ENSAMXG00000032452	casc3	75	58.521	ENSEASG00005002909	CASC3	85	56.180	Equus_asinus_asinus
ENSAMXG00000032452	casc3	78	36.457	ENSEEUG00000014253	CASC3	87	40.762	Erinaceus_europaeus
ENSAMXG00000032452	casc3	98	63.843	ENSELUG00000015093	casc3	99	63.717	Esox_lucius
ENSAMXG00000032452	casc3	91	47.573	ENSGALG00000031813	CASC3	95	48.824	Gallus_gallus
ENSAMXG00000032452	casc3	84	47.313	ENSGAGG00000008432	CASC3	84	60.000	Gopherus_agassizii
ENSAMXG00000032452	casc3	75	58.521	ENSHGLG00000012117	CASC3	73	59.177	Heterocephalus_glaber_female
ENSAMXG00000032452	casc3	67	58.521	ENSHGLG00100002268	CASC3	80	59.177	Heterocephalus_glaber_male
ENSAMXG00000032452	casc3	98	53.916	ENSHCOG00000002664	casc3	99	55.339	Hippocampus_comes
ENSAMXG00000032452	casc3	100	73.427	ENSIPUG00000002679	casc3	100	74.359	Ictalurus_punctatus
ENSAMXG00000032452	casc3	91	55.249	ENSKMAG00000019507	casc3	98	56.430	Kryptolebias_marmoratus
ENSAMXG00000032452	casc3	79	55.590	ENSLBEG00000005435	casc3	99	55.409	Labrus_bergylta
ENSAMXG00000032452	casc3	98	44.136	ENSLACG00000013200	CASC3	99	44.388	Latimeria_chalumnae
ENSAMXG00000032452	casc3	99	52.459	ENSLOCG00000013518	casc3	99	54.068	Lepisosteus_oculatus
ENSAMXG00000032452	casc3	75	57.097	ENSMFAG00000041496	CASC3	80	60.510	Macaca_fascicularis
ENSAMXG00000032452	casc3	67	57.097	ENSMLEG00000029049	CASC3	79	60.510	Mandrillus_leucophaeus
ENSAMXG00000032452	casc3	79	47.956	ENSMGAG00000013247	CASC3	99	47.961	Meleagris_gallopavo
ENSAMXG00000032452	casc3	76	58.991	ENSMOCG00000013644	Casc3	73	61.342	Microtus_ochrogaster
ENSAMXG00000032452	casc3	60	87.629	ENSMALG00000019771	casc3	83	82.143	Monopterus_albus
ENSAMXG00000032452	casc3	99	45.362	ENSMPUG00000014903	CASC3	90	47.666	Mustela_putorius_furo
ENSAMXG00000032452	casc3	62	58.101	ENSNGAG00000023121	Casc3	73	58.786	Nannospalax_galili
ENSAMXG00000032452	casc3	62	66.667	ENSMEUG00000015662	CASC3	74	51.136	Notamacropus_eugenii
ENSAMXG00000032452	casc3	73	69.508	ENSONIG00000009337	casc3	99	58.085	Oreochromis_niloticus
ENSAMXG00000032452	casc3	55	43.077	ENSOANG00000003499	-	74	45.312	Ornithorhynchus_anatinus
ENSAMXG00000032452	casc3	90	45.743	ENSOCUG00000002954	CASC3	90	47.017	Oryctolagus_cuniculus
ENSAMXG00000032452	casc3	98	59.144	ENSPKIG00000023186	casc3	97	60.682	Paramormyrops_kingsleyae
ENSAMXG00000032452	casc3	99	43.686	ENSPEMG00000009774	Casc3	91	47.658	Peromyscus_maniculatus_bairdii
ENSAMXG00000032452	casc3	58	73.571	ENSPREG00000011856	casc3	92	67.692	Poecilia_reticulata
ENSAMXG00000032452	casc3	73	56.013	ENSPCOG00000008183	CASC3	73	58.917	Propithecus_coquereli
ENSAMXG00000032452	casc3	100	87.995	ENSPNAG00000015928	casc3	100	88.918	Pygocentrus_nattereri
ENSAMXG00000032452	casc3	68	57.827	ENSRNOG00000009716	Casc3	80	59.744	Rattus_norvegicus
ENSAMXG00000032452	casc3	66	58.065	ENSSBOG00000031406	CASC3	78	59.873	Saimiri_boliviensis_boliviensis
ENSAMXG00000032452	casc3	98	62.159	ENSSFOG00015002645	casc3	99	62.484	Scleropages_formosus
ENSAMXG00000032452	casc3	70	66.000	ENSSLDG00000020308	casc3	89	68.106	Seriola_lalandi_dorsalis
ENSAMXG00000032452	casc3	52	57.006	ENSSARG00000010378	CASC3	67	58.917	Sorex_araneus
ENSAMXG00000032452	casc3	94	56.458	ENSTRUG00000000673	casc3	99	56.433	Takifugu_rubripes
ENSAMXG00000032452	casc3	94	52.531	ENSTNIG00000003208	casc3	99	53.464	Tetraodon_nigroviridis
ENSAMXG00000032452	casc3	61	65.094	ENSTBEG00000017459	CASC3	53	67.453	Tupaia_belangeri
ENSAMXG00000032452	casc3	53	55.856	ENSTTRG00000016896	CASC3	70	56.637	Tursiops_truncatus
ENSAMXG00000032452	casc3	77	58.654	ENSUAMG00000015116	CASC3	81	60.443	Ursus_americanus
ENSAMXG00000032452	casc3	62	58.974	ENSUMAG00000017697	CASC3	89	60.759	Ursus_maritimus