EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000032617 (Gene tree)
Gene ID: 103026935
Gene Symbol: -
Alias: -
Full Name: RNA-binding Raly-like protein
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 92554 bases
Position: chr16:11661678-11754231
Accession: 103026935
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000030132	RRM_1	PF00076.22	7.4e-12	1	1
ENSAMXP00000014673	RRM_1	PF00076.22	8.5e-12	1	1
ENSAMXP00000041806	RRM_1	PF00076.22	8.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000052461	-	1734	XM_022678017	ENSAMXP00000030132	292 (aa)	XP_022533738	UPI0003CD209F
ENSAMXT00000014673	-	1330	-	ENSAMXP00000014673	306 (aa)	-	W5L4B1
ENSAMXT00000047312	-	4725	-	ENSAMXP00000041806	306 (aa)	-	-
ENSAMXT00000049094	-	2151	-	ENSAMXP00000032791	179 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000032617's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000032617's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000032617	-	100	65.657	ENSAMXG00000019031	-	100	65.657
ENSAMXG00000032617	-	85	48.425	ENSAMXG00000034915	zgc:55733	92	49.627
ENSAMXG00000032617	-	63	50.000	ENSAMXG00000042946	hnrnpc	95	48.969

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000032617	-	100	64.310	ENSAPOG00000008744	-	100	64.430	Acanthochromis_polyacanthus
ENSAMXG00000032617	-	97	61.168	ENSACIG00000007143	-	100	60.667	Amphilophus_citrinellus
ENSAMXG00000032617	-	100	65.772	ENSAOCG00000023599	-	100	65.101	Amphiprion_ocellaris
ENSAMXG00000032617	-	100	65.320	ENSAOCG00000001605	-	100	65.320	Amphiprion_ocellaris
ENSAMXG00000032617	-	100	60.065	ENSATEG00000022219	-	96	63.636	Anabas_testudineus
ENSAMXG00000032617	-	77	70.222	ENSATEG00000023356	-	98	62.338	Anabas_testudineus
ENSAMXG00000032617	-	100	65.320	ENSACLG00000006949	-	100	65.320	Astatotilapia_calliptera
ENSAMXG00000032617	-	100	64.983	ENSACLG00000011720	-	100	64.646	Astatotilapia_calliptera
ENSAMXG00000032617	-	100	59.596	ENSCSEG00000014237	-	100	59.259	Cynoglossus_semilaevis
ENSAMXG00000032617	-	100	64.094	ENSCVAG00000013624	-	100	63.423	Cyprinodon_variegatus
ENSAMXG00000032617	-	100	65.772	ENSCVAG00000018104	-	100	65.436	Cyprinodon_variegatus
ENSAMXG00000032617	-	61	73.034	ENSDARG00000090292	ralyl	80	78.616	Danio_rerio
ENSAMXG00000032617	-	93	58.065	ENSELUG00000001702	-	92	58.175	Esox_lucius
ENSAMXG00000032617	-	57	65.455	ENSGMOG00000005914	-	96	67.296	Gadus_morhua
ENSAMXG00000032617	-	64	71.123	ENSGACG00000004991	-	88	79.375	Gasterosteus_aculeatus
ENSAMXG00000032617	-	100	65.320	ENSHBUG00000015412	-	100	65.320	Haplochromis_burtoni
ENSAMXG00000032617	-	100	64.765	ENSHBUG00000010040	-	100	64.094	Haplochromis_burtoni
ENSAMXG00000032617	-	100	65.320	ENSIPUG00000000507	ralyl	100	65.657	Ictalurus_punctatus
ENSAMXG00000032617	-	100	62.626	ENSKMAG00000022093	-	100	63.636	Kryptolebias_marmoratus
ENSAMXG00000032617	-	100	64.646	ENSKMAG00000018155	-	100	64.646	Kryptolebias_marmoratus
ENSAMXG00000032617	-	100	64.189	ENSLBEG00000011011	-	100	64.189	Labrus_bergylta
ENSAMXG00000032617	-	100	64.094	ENSLBEG00000012873	-	100	63.758	Labrus_bergylta
ENSAMXG00000032617	-	100	63.176	ENSLOCG00000012787	ralyl	99	61.486	Lepisosteus_oculatus
ENSAMXG00000032617	-	97	63.509	ENSMAMG00000001723	-	90	66.792	Mastacembelus_armatus
ENSAMXG00000032617	-	97	62.457	ENSMZEG00005018748	-	93	64.706	Maylandia_zebra
ENSAMXG00000032617	-	100	64.983	ENSMZEG00005024447	-	100	64.646	Maylandia_zebra
ENSAMXG00000032617	-	99	56.818	ENSMMOG00000020441	-	88	60.518	Mola_mola
ENSAMXG00000032617	-	100	64.310	ENSMALG00000012952	-	100	64.310	Monopterus_albus
ENSAMXG00000032617	-	100	64.646	ENSMALG00000019019	-	78	64.310	Monopterus_albus
ENSAMXG00000032617	-	97	62.245	ENSNBRG00000011376	-	93	65.568	Neolamprologus_brichardi
ENSAMXG00000032617	-	99	60.870	ENSNBRG00000011206	-	99	61.000	Neolamprologus_brichardi
ENSAMXG00000032617	-	90	66.045	ENSORLG00000017934	-	100	63.087	Oryzias_latipes
ENSAMXG00000032617	-	100	64.646	ENSORLG00000012719	-	100	64.646	Oryzias_latipes
ENSAMXG00000032617	-	90	64.925	ENSORLG00020000082	-	100	63.423	Oryzias_latipes_hni
ENSAMXG00000032617	-	100	64.646	ENSORLG00020004438	-	100	64.646	Oryzias_latipes_hni
ENSAMXG00000032617	-	100	64.983	ENSORLG00015004727	-	100	64.983	Oryzias_latipes_hsok
ENSAMXG00000032617	-	90	66.045	ENSORLG00015004280	-	100	63.087	Oryzias_latipes_hsok
ENSAMXG00000032617	-	100	64.983	ENSOMEG00000001170	-	100	64.983	Oryzias_melastigma
ENSAMXG00000032617	-	90	66.292	ENSOMEG00000011821	-	100	64.310	Oryzias_melastigma
ENSAMXG00000032617	-	100	61.565	ENSPKIG00000015926	-	100	61.565	Paramormyrops_kingsleyae
ENSAMXG00000032617	-	80	64.286	ENSPMGG00000014481	-	99	64.286	Periophthalmus_magnuspinnatus
ENSAMXG00000032617	-	97	59.310	ENSPMGG00000009532	-	98	59.450	Periophthalmus_magnuspinnatus
ENSAMXG00000032617	-	98	58.086	ENSPFOG00000006120	-	94	63.214	Poecilia_formosa
ENSAMXG00000032617	-	97	64.261	ENSPLAG00000011323	ralyl	95	66.421	Poecilia_latipinna
ENSAMXG00000032617	-	98	57.912	ENSPLAG00000009877	-	71	60.584	Poecilia_latipinna
ENSAMXG00000032617	-	97	64.261	ENSPMEG00000023847	ralyl	95	66.421	Poecilia_mexicana
ENSAMXG00000032617	-	98	57.912	ENSPMEG00000013624	-	75	60.949	Poecilia_mexicana
ENSAMXG00000032617	-	97	64.014	ENSPREG00000013805	-	100	60.063	Poecilia_reticulata
ENSAMXG00000032617	-	97	63.793	ENSPREG00000001956	ralyl	95	66.296	Poecilia_reticulata
ENSAMXG00000032617	-	97	62.457	ENSPNYG00000003548	-	93	64.706	Pundamilia_nyererei
ENSAMXG00000032617	-	99	60.870	ENSPNYG00000008772	-	99	61.000	Pundamilia_nyererei
ENSAMXG00000032617	-	100	64.527	ENSPNAG00000000498	-	88	64.527	Pygocentrus_nattereri
ENSAMXG00000032617	-	100	86.301	ENSPNAG00000026098	-	100	86.986	Pygocentrus_nattereri
ENSAMXG00000032617	-	100	56.271	ENSSFOG00015004575	-	96	61.538	Scleropages_formosus
ENSAMXG00000032617	-	100	65.217	ENSSFOG00015009401	-	100	65.552	Scleropages_formosus
ENSAMXG00000032617	-	95	64.643	ENSSMAG00000015907	-	88	65.660	Scophthalmus_maximus
ENSAMXG00000032617	-	100	64.983	ENSSMAG00000005608	-	100	64.983	Scophthalmus_maximus
ENSAMXG00000032617	-	100	65.657	ENSSDUG00000007587	-	100	65.657	Seriola_dumerili
ENSAMXG00000032617	-	100	64.983	ENSSDUG00000012473	-	100	64.310	Seriola_dumerili
ENSAMXG00000032617	-	100	64.646	ENSSLDG00000011534	-	100	63.973	Seriola_lalandi_dorsalis
ENSAMXG00000032617	-	100	65.772	ENSSLDG00000020603	-	100	65.436	Seriola_lalandi_dorsalis
ENSAMXG00000032617	-	100	56.997	ENSSPAG00000013858	-	96	57.338	Stegastes_partitus
ENSAMXG00000032617	-	96	63.140	ENSTRUG00000003829	-	99	62.799	Takifugu_rubripes
ENSAMXG00000032617	-	97	60.884	ENSTNIG00000005594	-	93	63.139	Tetraodon_nigroviridis
ENSAMXG00000032617	-	100	58.940	ENSXETG00000017729	ralyl	99	59.197	Xenopus_tropicalis
ENSAMXG00000032617	-	97	62.542	ENSXCOG00000015156	-	88	64.516	Xiphophorus_couchianus
ENSAMXG00000032617	-	100	64.094	ENSXMAG00000007614	-	100	63.423	Xiphophorus_maculatus
ENSAMXG00000032617	-	100	64.983	ENSXMAG00000008396	-	100	64.983	Xiphophorus_maculatus