EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000032641 (Gene tree)
Gene ID: 111193750
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 6435 bases
Position: chr13:23528819-23535253
Accession: 111193750
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000033360	zf-U1	PF06220.12	1.1e-22	1	1
ENSAMXP00000031401	zf-U1	PF06220.12	1.9e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000047456	-	444	-	ENSAMXP00000033360	147 (aa)	-	-
ENSAMXT00000051663	-	1515	XM_022675564	ENSAMXP00000031401	182 (aa)	XP_022531285	UPI000BBDEF93

Gene Model

Click here to download ENSAMXG00000032641's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000032641's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000032641	snrpc	100	72.956	ENSG00000124562	SNRPC	100	84.906	Homo_sapiens
ENSAMXG00000032641	snrpc	100	71.069	ENSAMEG00000000963	SNRPC	91	80.606	Ailuropoda_melanoleuca
ENSAMXG00000032641	snrpc	87	84.906	ENSACAG00000015721	SNRPC	87	85.987	Anolis_carolinensis
ENSAMXG00000032641	snrpc	100	72.327	ENSANAG00000007843	-	100	84.277	Aotus_nancymaae
ENSAMXG00000032641	snrpc	88	78.125	ENSANAG00000019726	-	97	71.856	Aotus_nancymaae
ENSAMXG00000032641	snrpc	100	72.956	ENSANAG00000019696	-	100	84.906	Aotus_nancymaae
ENSAMXG00000032641	snrpc	93	73.529	ENSANAG00000020588	-	99	73.529	Aotus_nancymaae
ENSAMXG00000032641	snrpc	100	62.500	ENSANAG00000021026	-	100	65.409	Aotus_nancymaae
ENSAMXG00000032641	snrpc	100	51.572	ENSANAG00000021444	-	100	58.491	Aotus_nancymaae
ENSAMXG00000032641	snrpc	100	71.698	ENSANAG00000019157	-	100	81.132	Aotus_nancymaae
ENSAMXG00000032641	snrpc	100	72.956	ENSBTAG00000024549	SNRPC	100	84.906	Bos_taurus
ENSAMXG00000032641	snrpc	100	71.698	ENSCJAG00000041822	-	100	82.390	Callithrix_jacchus
ENSAMXG00000032641	snrpc	100	72.327	ENSCJAG00000043055	-	100	84.277	Callithrix_jacchus
ENSAMXG00000032641	snrpc	100	72.956	ENSCJAG00000015321	-	100	84.906	Callithrix_jacchus
ENSAMXG00000032641	snrpc	87	69.375	ENSCAFG00000025525	-	100	54.696	Canis_familiaris
ENSAMXG00000032641	snrpc	100	70.625	ENSCAFG00000031775	-	100	82.390	Canis_familiaris
ENSAMXG00000032641	snrpc	100	68.750	ENSCAFG00020005758	-	99	81.529	Canis_lupus_dingo
ENSAMXG00000032641	snrpc	100	72.956	ENSCAFG00020005945	-	100	84.906	Canis_lupus_dingo
ENSAMXG00000032641	snrpc	100	70.625	ENSCAFG00020017383	-	100	82.390	Canis_lupus_dingo
ENSAMXG00000032641	snrpc	86	75.159	ENSCAFG00020009944	-	90	75.159	Canis_lupus_dingo
ENSAMXG00000032641	snrpc	87	63.483	ENSCAFG00020026577	-	100	56.742	Canis_lupus_dingo
ENSAMXG00000032641	snrpc	100	59.477	ENSCHIG00000005039	-	100	65.432	Capra_hircus
ENSAMXG00000032641	snrpc	100	72.327	ENSCHIG00000012087	-	100	84.277	Capra_hircus
ENSAMXG00000032641	snrpc	76	78.417	ENSTSYG00000029745	-	85	73.373	Carlito_syrichta
ENSAMXG00000032641	snrpc	100	68.707	ENSTSYG00000025721	-	100	68.707	Carlito_syrichta
ENSAMXG00000032641	snrpc	100	72.956	ENSTSYG00000011216	-	100	84.906	Carlito_syrichta
ENSAMXG00000032641	snrpc	78	83.099	ENSCAPG00000005161	SNRPC	100	83.099	Cavia_aperea
ENSAMXG00000032641	snrpc	100	72.956	ENSCPOG00000008563	SNRPC	100	84.906	Cavia_porcellus
ENSAMXG00000032641	snrpc	99	68.276	ENSCCAG00000026624	-	66	69.655	Cebus_capucinus
ENSAMXG00000032641	snrpc	100	59.184	ENSCCAG00000028293	-	100	59.748	Cebus_capucinus
ENSAMXG00000032641	snrpc	100	67.925	ENSCCAG00000036059	-	94	76.190	Cebus_capucinus
ENSAMXG00000032641	snrpc	88	63.354	ENSCCAG00000022209	-	95	64.744	Cebus_capucinus
ENSAMXG00000032641	snrpc	98	66.667	ENSCCAG00000022751	-	95	76.923	Cebus_capucinus
ENSAMXG00000032641	snrpc	100	72.956	ENSCATG00000035787	SNRPC	100	84.906	Cercocebus_atys
ENSAMXG00000032641	snrpc	100	72.956	ENSCLAG00000016920	SNRPC	100	84.906	Chinchilla_lanigera
ENSAMXG00000032641	snrpc	99	63.057	ENSCLAG00000010242	-	96	70.064	Chinchilla_lanigera
ENSAMXG00000032641	snrpc	87	63.483	ENSCSAG00000009821	SNRPC	100	56.742	Chlorocebus_sabaeus
ENSAMXG00000032641	snrpc	100	71.069	ENSCHOG00000011439	SNRPC	88	74.522	Choloepus_hoffmanni
ENSAMXG00000032641	snrpc	100	71.698	ENSCPBG00000027142	SNRPC	100	84.277	Chrysemys_picta_bellii
ENSAMXG00000032641	snrpc	100	72.956	ENSCANG00000028035	SNRPC	100	84.906	Colobus_angolensis_palliatus
ENSAMXG00000032641	snrpc	87	84.277	ENSCGRG00001009011	-	100	84.277	Cricetulus_griseus_chok1gshd
ENSAMXG00000032641	snrpc	100	72.000	ENSCGRG00001021483	-	100	74.830	Cricetulus_griseus_chok1gshd
ENSAMXG00000032641	snrpc	87	82.390	ENSCGRG00000005005	Snrpc	99	83.439	Cricetulus_griseus_crigri
ENSAMXG00000032641	snrpc	100	63.946	ENSCVAG00000014297	snrpc	100	78.146	Cyprinodon_variegatus
ENSAMXG00000032641	snrpc	87	96.226	ENSDARG00000009871	snrpc	100	96.226	Danio_rerio
ENSAMXG00000032641	snrpc	100	72.327	ENSDNOG00000034699	-	100	83.750	Dasypus_novemcinctus
ENSAMXG00000032641	snrpc	95	62.000	ENSDORG00000029823	-	100	62.893	Dipodomys_ordii
ENSAMXG00000032641	snrpc	76	58.519	ENSETEG00000008268	-	100	82.051	Echinops_telfairi
ENSAMXG00000032641	snrpc	86	78.205	ENSETEG00000011265	-	100	78.205	Echinops_telfairi
ENSAMXG00000032641	snrpc	100	72.956	ENSEASG00005021007	SNRPC	100	84.906	Equus_asinus_asinus
ENSAMXG00000032641	snrpc	100	72.956	ENSECAG00000026848	SNRPC	100	84.906	Equus_caballus
ENSAMXG00000032641	snrpc	99	72.152	ENSEEUG00000014633	SNRPC	97	69.231	Erinaceus_europaeus
ENSAMXG00000032641	snrpc	87	84.663	ENSELUG00000020489	snrpc	100	76.250	Esox_lucius
ENSAMXG00000032641	snrpc	91	81.212	ENSELUG00000000815	SNRPC	100	84.277	Esox_lucius
ENSAMXG00000032641	snrpc	100	72.956	ENSFCAG00000044077	-	100	84.906	Felis_catus
ENSAMXG00000032641	snrpc	87	84.906	ENSFALG00000003756	SNRPC	100	84.906	Ficedula_albicollis
ENSAMXG00000032641	snrpc	100	72.956	ENSFDAG00000018111	SNRPC	100	84.906	Fukomys_damarensis
ENSAMXG00000032641	snrpc	65	88.235	ENSFHEG00000016667	snrpc	97	88.235	Fundulus_heteroclitus
ENSAMXG00000032641	snrpc	100	73.125	ENSGALG00000002773	SNRPC	100	83.750	Gallus_gallus
ENSAMXG00000032641	snrpc	100	63.265	ENSGAFG00000016115	snrpc	100	77.483	Gambusia_affinis
ENSAMXG00000032641	snrpc	100	71.698	ENSGAGG00000003063	SNRPC	100	84.277	Gopherus_agassizii
ENSAMXG00000032641	snrpc	100	72.956	ENSGGOG00000012499	SNRPC	100	84.906	Gorilla_gorilla
ENSAMXG00000032641	snrpc	100	72.956	ENSHGLG00000013981	SNRPC	100	84.906	Heterocephalus_glaber_female
ENSAMXG00000032641	snrpc	100	70.588	ENSHGLG00000017741	-	100	75.472	Heterocephalus_glaber_female
ENSAMXG00000032641	snrpc	71	65.116	ENSHGLG00000005871	-	100	63.522	Heterocephalus_glaber_female
ENSAMXG00000032641	snrpc	100	70.625	ENSHGLG00100017764	-	100	81.132	Heterocephalus_glaber_male
ENSAMXG00000032641	snrpc	100	72.956	ENSHGLG00100009478	SNRPC	100	84.906	Heterocephalus_glaber_male
ENSAMXG00000032641	snrpc	100	70.588	ENSHGLG00100010786	-	100	75.472	Heterocephalus_glaber_male
ENSAMXG00000032641	snrpc	87	96.855	ENSIPUG00000024851	snrpc	100	96.855	Ictalurus_punctatus
ENSAMXG00000032641	snrpc	100	72.956	ENSSTOG00000013786	SNRPC	100	84.906	Ictidomys_tridecemlineatus
ENSAMXG00000032641	snrpc	87	84.277	ENSJJAG00000021741	Snrpc	100	84.277	Jaculus_jaculus
ENSAMXG00000032641	snrpc	100	73.826	ENSKMAG00000016356	snrpc	100	81.875	Kryptolebias_marmoratus
ENSAMXG00000032641	snrpc	100	72.956	ENSLAFG00000013534	SNRPC	100	84.906	Loxodonta_africana
ENSAMXG00000032641	snrpc	100	72.327	ENSMFAG00000030525	-	100	84.277	Macaca_fascicularis
ENSAMXG00000032641	snrpc	100	72.956	ENSMFAG00000031764	-	100	84.906	Macaca_fascicularis
ENSAMXG00000032641	snrpc	100	71.698	ENSMMUG00000039415	-	100	83.648	Macaca_mulatta
ENSAMXG00000032641	snrpc	100	71.698	ENSMMUG00000000869	-	95	84.615	Macaca_mulatta
ENSAMXG00000032641	snrpc	100	64.780	ENSMMUG00000045425	-	100	74.843	Macaca_mulatta
ENSAMXG00000032641	snrpc	100	72.956	ENSMNEG00000032731	SNRPC	100	84.906	Macaca_nemestrina
ENSAMXG00000032641	snrpc	100	72.956	ENSMLEG00000033916	-	100	84.906	Mandrillus_leucophaeus
ENSAMXG00000032641	snrpc	97	67.308	ENSMLEG00000040224	-	89	77.419	Mandrillus_leucophaeus
ENSAMXG00000032641	snrpc	97	51.266	ENSMLEG00000039724	-	81	57.143	Mandrillus_leucophaeus
ENSAMXG00000032641	snrpc	100	72.785	ENSMGAG00000006054	SNRPC	100	83.648	Meleagris_gallopavo
ENSAMXG00000032641	snrpc	92	67.456	ENSMICG00000036552	-	94	66.864	Microcebus_murinus
ENSAMXG00000032641	snrpc	100	74.843	ENSMICG00000007339	-	100	84.906	Microcebus_murinus
ENSAMXG00000032641	snrpc	100	72.327	ENSMICG00000032183	-	100	84.277	Microcebus_murinus
ENSAMXG00000032641	snrpc	87	84.277	ENSMOCG00000017609	Snrpc	100	84.277	Microtus_ochrogaster
ENSAMXG00000032641	snrpc	60	70.455	ENSMODG00000025263	-	100	65.625	Monodelphis_domestica
ENSAMXG00000032641	snrpc	87	85.535	ENSMODG00000013904	-	100	85.535	Monodelphis_domestica
ENSAMXG00000032641	snrpc	100	62.838	ENSMALG00000001197	snrpc	100	79.375	Monopterus_albus
ENSAMXG00000032641	snrpc	87	84.277	MGP_CAROLIEiJ_G0021308	Snrpc	100	84.277	Mus_caroli
ENSAMXG00000032641	snrpc	87	84.277	ENSMUSG00000024217	Snrpc	100	84.277	Mus_musculus
ENSAMXG00000032641	snrpc	100	71.069	ENSMPUG00000003210	SNRPC	99	84.076	Mustela_putorius_furo
ENSAMXG00000032641	snrpc	100	71.069	ENSMLUG00000002488	SNRPC	99	84.076	Myotis_lucifugus
ENSAMXG00000032641	snrpc	87	84.277	ENSNGAG00000019686	Snrpc	100	84.277	Nannospalax_galili
ENSAMXG00000032641	snrpc	100	72.956	ENSNLEG00000034810	SNRPC	100	84.906	Nomascus_leucogenys
ENSAMXG00000032641	snrpc	78	83.099	ENSMEUG00000009300	SNRPC	100	83.099	Notamacropus_eugenii
ENSAMXG00000032641	snrpc	100	72.956	ENSODEG00000017080	-	100	84.906	Octodon_degus
ENSAMXG00000032641	snrpc	100	71.698	ENSODEG00000019633	-	100	83.648	Octodon_degus
ENSAMXG00000032641	snrpc	100	72.956	ENSODEG00000020370	-	100	84.906	Octodon_degus
ENSAMXG00000032641	snrpc	100	72.956	ENSODEG00000018985	-	100	84.906	Octodon_degus
ENSAMXG00000032641	snrpc	68	80.488	ENSODEG00000006008	-	100	50.350	Octodon_degus
ENSAMXG00000032641	snrpc	100	72.500	ENSODEG00000020201	-	100	84.277	Octodon_degus
ENSAMXG00000032641	snrpc	78	80.822	ENSOANG00000003405	SNRPC	99	80.822	Ornithorhynchus_anatinus
ENSAMXG00000032641	snrpc	100	72.956	ENSOCUG00000026668	-	100	84.906	Oryctolagus_cuniculus
ENSAMXG00000032641	snrpc	100	69.753	ENSOCUG00000026430	-	99	83.125	Oryctolagus_cuniculus
ENSAMXG00000032641	snrpc	52	85.263	ENSOCUG00000023292	-	100	83.648	Oryctolagus_cuniculus
ENSAMXG00000032641	snrpc	64	77.083	ENSORLG00020012607	SNRPC	97	83.766	Oryzias_latipes_hni
ENSAMXG00000032641	snrpc	65	88.235	ENSOMEG00000012014	snrpc	86	83.125	Oryzias_melastigma
ENSAMXG00000032641	snrpc	85	62.338	ENSOGAG00000028405	-	99	66.234	Otolemur_garnettii
ENSAMXG00000032641	snrpc	85	84.516	ENSOGAG00000008755	-	88	84.076	Otolemur_garnettii
ENSAMXG00000032641	snrpc	100	72.327	ENSOGAG00000026269	-	100	83.648	Otolemur_garnettii
ENSAMXG00000032641	snrpc	100	72.956	ENSOARG00000010823	SNRPC	100	84.906	Ovis_aries
ENSAMXG00000032641	snrpc	100	72.956	ENSPPAG00000043871	SNRPC	100	84.906	Pan_paniscus
ENSAMXG00000032641	snrpc	95	46.405	ENSPPRG00000016017	-	85	50.345	Panthera_pardus
ENSAMXG00000032641	snrpc	100	58.784	ENSPPRG00000010967	-	91	53.086	Panthera_pardus
ENSAMXG00000032641	snrpc	100	72.956	ENSPPRG00000008647	-	100	84.906	Panthera_pardus
ENSAMXG00000032641	snrpc	100	55.782	ENSPTIG00000011880	-	88	51.020	Panthera_tigris_altaica
ENSAMXG00000032641	snrpc	95	50.000	ENSPTIG00000013329	-	60	70.652	Panthera_tigris_altaica
ENSAMXG00000032641	snrpc	100	72.956	ENSPTIG00000021867	-	100	84.906	Panthera_tigris_altaica
ENSAMXG00000032641	snrpc	100	72.956	ENSPTRG00000018070	SNRPC	100	84.906	Pan_troglodytes
ENSAMXG00000032641	snrpc	100	72.956	ENSPANG00000022802	-	100	84.906	Papio_anubis
ENSAMXG00000032641	snrpc	100	63.522	ENSPANG00000018228	-	100	70.588	Papio_anubis
ENSAMXG00000032641	snrpc	87	84.906	ENSPKIG00000001671	SNRPC	100	84.906	Paramormyrops_kingsleyae
ENSAMXG00000032641	snrpc	52	92.553	ENSPKIG00000003136	snrpc	100	87.742	Paramormyrops_kingsleyae
ENSAMXG00000032641	snrpc	99	71.519	ENSPSIG00000004876	SNRPC	81	79.518	Pelodiscus_sinensis
ENSAMXG00000032641	snrpc	99	77.241	ENSPMGG00000022162	snrpc	99	76.027	Periophthalmus_magnuspinnatus
ENSAMXG00000032641	snrpc	100	64.557	ENSPEMG00000002763	-	100	72.327	Peromyscus_maniculatus_bairdii
ENSAMXG00000032641	snrpc	87	84.277	ENSPEMG00000010773	Snrpc	100	84.277	Peromyscus_maniculatus_bairdii
ENSAMXG00000032641	snrpc	99	60.390	ENSPMAG00000000602	snrpc	98	61.783	Petromyzon_marinus
ENSAMXG00000032641	snrpc	100	63.265	ENSPFOG00000015174	snrpc	100	77.483	Poecilia_formosa
ENSAMXG00000032641	snrpc	100	63.265	ENSPLAG00000012311	snrpc	100	77.483	Poecilia_latipinna
ENSAMXG00000032641	snrpc	100	63.265	ENSPMEG00000010274	snrpc	100	77.483	Poecilia_mexicana
ENSAMXG00000032641	snrpc	99	75.342	ENSPREG00000013017	snrpc	79	77.551	Poecilia_reticulata
ENSAMXG00000032641	snrpc	87	83.019	ENSPCAG00000016885	SNRPC	90	84.076	Procavia_capensis
ENSAMXG00000032641	snrpc	100	72.956	ENSPCOG00000004904	SNRPC	100	84.906	Propithecus_coquereli
ENSAMXG00000032641	snrpc	87	82.390	ENSPVAG00000015597	SNRPC	87	83.439	Pteropus_vampyrus
ENSAMXG00000032641	snrpc	82	72.727	ENSPNYG00000004900	snrpc	100	71.724	Pundamilia_nyererei
ENSAMXG00000032641	snrpc	87	98.113	ENSPNAG00000012799	snrpc	100	98.113	Pygocentrus_nattereri
ENSAMXG00000032641	snrpc	87	84.277	ENSRNOG00000000493	Snrpc	100	84.277	Rattus_norvegicus
ENSAMXG00000032641	snrpc	100	62.577	ENSRBIG00000036353	-	83	74.375	Rhinopithecus_bieti
ENSAMXG00000032641	snrpc	100	72.956	ENSRBIG00000037567	-	100	84.906	Rhinopithecus_bieti
ENSAMXG00000032641	snrpc	100	72.327	ENSRBIG00000022998	-	100	84.277	Rhinopithecus_bieti
ENSAMXG00000032641	snrpc	100	72.956	ENSRBIG00000014819	-	100	84.906	Rhinopithecus_bieti
ENSAMXG00000032641	snrpc	100	72.956	ENSRROG00000041300	SNRPC	100	84.906	Rhinopithecus_roxellana
ENSAMXG00000032641	snrpc	100	72.956	ENSSBOG00000031528	-	100	84.906	Saimiri_boliviensis_boliviensis
ENSAMXG00000032641	snrpc	98	63.057	ENSSBOG00000023189	-	91	72.436	Saimiri_boliviensis_boliviensis
ENSAMXG00000032641	snrpc	95	62.937	ENSSBOG00000032361	-	99	66.667	Saimiri_boliviensis_boliviensis
ENSAMXG00000032641	snrpc	98	67.361	ENSSBOG00000032882	-	93	69.872	Saimiri_boliviensis_boliviensis
ENSAMXG00000032641	snrpc	99	72.785	ENSSHAG00000000945	-	87	84.076	Sarcophilus_harrisii
ENSAMXG00000032641	snrpc	60	70.455	ENSSHAG00000002972	-	100	65.625	Sarcophilus_harrisii
ENSAMXG00000032641	snrpc	100	75.000	ENSSFOG00015019150	snrpc	100	84.277	Scleropages_formosus
ENSAMXG00000032641	snrpc	51	95.652	ENSSFOG00015022422	snrpc	99	90.968	Scleropages_formosus
ENSAMXG00000032641	snrpc	87	65.409	ENSSARG00000008970	SNRPC	89	65.409	Sorex_araneus
ENSAMXG00000032641	snrpc	87	86.164	ENSSPUG00000002502	SNRPC	100	86.164	Sphenodon_punctatus
ENSAMXG00000032641	snrpc	100	72.956	ENSSSCG00000001531	SNRPC	100	84.906	Sus_scrofa
ENSAMXG00000032641	snrpc	87	83.648	ENSTGUG00000001773	SNRPC	99	84.177	Taeniopygia_guttata
ENSAMXG00000032641	snrpc	100	61.486	ENSTRUG00000021651	snrpc	100	75.000	Takifugu_rubripes
ENSAMXG00000032641	snrpc	100	66.049	ENSTNIG00000018307	snrpc	100	78.395	Tetraodon_nigroviridis
ENSAMXG00000032641	snrpc	86	78.205	ENSTBEG00000013022	-	100	78.205	Tupaia_belangeri
ENSAMXG00000032641	snrpc	88	64.789	ENSTBEG00000016759	-	79	64.789	Tupaia_belangeri
ENSAMXG00000032641	snrpc	52	80.000	ENSTBEG00000015356	-	100	66.026	Tupaia_belangeri
ENSAMXG00000032641	snrpc	87	83.019	ENSTTRG00000007827	SNRPC	86	84.076	Tursiops_truncatus
ENSAMXG00000032641	snrpc	78	62.676	ENSVPAG00000003106	SNRPC	79	62.676	Vicugna_pacos
ENSAMXG00000032641	snrpc	85	79.870	ENSVVUG00000010467	-	87	80.128	Vulpes_vulpes
ENSAMXG00000032641	snrpc	100	71.698	ENSVVUG00000021947	-	100	83.648	Vulpes_vulpes
ENSAMXG00000032641	snrpc	100	72.327	ENSXETG00000024721	snrpc	100	83.648	Xenopus_tropicalis
ENSAMXG00000032641	snrpc	100	63.265	ENSXMAG00000017935	snrpc	100	77.483	Xiphophorus_maculatus