EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000032642 (Gene tree)
Gene ID: 103029472
Gene Symbol: znf408
Alias: zmp:0000000586
Full Name: zinc finger protein 408
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 10684 bases
Position: chrAPWO02000034.1:1374843-1385526
Accession: 103029472
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000030728	zf-C2H2	PF00096.26	1.2e-40	1	7
ENSAMXP00000030728	zf-C2H2	PF00096.26	1.2e-40	2	7
ENSAMXP00000030728	zf-C2H2	PF00096.26	1.2e-40	3	7
ENSAMXP00000030728	zf-C2H2	PF00096.26	1.2e-40	4	7
ENSAMXP00000030728	zf-C2H2	PF00096.26	1.2e-40	5	7
ENSAMXP00000030728	zf-C2H2	PF00096.26	1.2e-40	6	7
ENSAMXP00000030728	zf-C2H2	PF00096.26	1.2e-40	7	7
ENSAMXP00000047300	zf-C2H2	PF00096.26	3.7e-40	1	7
ENSAMXP00000047300	zf-C2H2	PF00096.26	3.7e-40	2	7
ENSAMXP00000047300	zf-C2H2	PF00096.26	3.7e-40	3	7
ENSAMXP00000047300	zf-C2H2	PF00096.26	3.7e-40	4	7
ENSAMXP00000047300	zf-C2H2	PF00096.26	3.7e-40	5	7
ENSAMXP00000047300	zf-C2H2	PF00096.26	3.7e-40	6	7
ENSAMXP00000047300	zf-C2H2	PF00096.26	3.7e-40	7	7
ENSAMXP00000030728	zf-met	PF12874.7	5.7e-07	1	1
ENSAMXP00000047300	zf-met	PF12874.7	1.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000040818	-	3663	-	ENSAMXP00000030728	709 (aa)	-	-
ENSAMXT00000034772	-	3574	XM_015604712	ENSAMXP00000047300	784 (aa)	XP_015460198	UPI000BBD80BD

Gene Model

Click here to download ENSAMXG00000032642's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000032642's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000032642	znf408	51	41.367	ENSAMXG00000036233	-	77	42.745
ENSAMXG00000032642	znf408	56	32.317	ENSAMXG00000001155	si:dkey-89b17.4	63	32.317
ENSAMXG00000032642	znf408	53	36.111	ENSAMXG00000034454	si:ch211-236k19.4	53	36.111
ENSAMXG00000032642	znf408	58	36.264	ENSAMXG00000038122	-	96	45.122
ENSAMXG00000032642	znf408	55	42.857	ENSAMXG00000036915	-	98	42.857
ENSAMXG00000032642	znf408	54	42.632	ENSAMXG00000039881	-	52	38.140

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000032642	znf408	67	53.301	ENSG00000175213	ZNF408	90	39.863	Homo_sapiens
ENSAMXG00000032642	znf408	84	44.062	ENSAMEG00000006904	ZNF408	93	38.520	Ailuropoda_melanoleuca
ENSAMXG00000032642	znf408	91	39.605	ENSANAG00000036294	ZNF408	90	38.102	Aotus_nancymaae
ENSAMXG00000032642	znf408	91	40.364	ENSCJAG00000019859	ZNF408	90	39.373	Callithrix_jacchus
ENSAMXG00000032642	znf408	97	39.455	ENSCAFG00000009143	ZNF408	90	39.119	Canis_familiaris
ENSAMXG00000032642	znf408	97	39.455	ENSCAFG00020019155	ZNF408	90	39.119	Canis_lupus_dingo
ENSAMXG00000032642	znf408	55	54.453	ENSCHIG00000025346	ZNF408	58	54.707	Capra_hircus
ENSAMXG00000032642	znf408	56	52.632	ENSTSYG00000025443	ZNF408	93	39.578	Carlito_syrichta
ENSAMXG00000032642	znf408	91	39.757	ENSCCAG00000029472	ZNF408	90	39.237	Cebus_capucinus
ENSAMXG00000032642	znf408	97	35.769	ENSCGRG00001023588	Zfp408	93	36.293	Cricetulus_griseus_chok1gshd
ENSAMXG00000032642	znf408	97	35.769	ENSCGRG00000017618	Zfp408	93	36.293	Cricetulus_griseus_crigri
ENSAMXG00000032642	znf408	91	40.212	ENSDNOG00000047669	ZNF408	90	39.563	Dasypus_novemcinctus
ENSAMXG00000032642	znf408	66	52.320	ENSDORG00000000387	Zfp408	73	52.699	Dipodomys_ordii
ENSAMXG00000032642	znf408	97	37.464	ENSEASG00005015461	ZNF408	93	37.388	Equus_asinus_asinus
ENSAMXG00000032642	znf408	97	37.624	ENSECAG00000010878	ZNF408	93	37.741	Equus_caballus
ENSAMXG00000032642	znf408	77	48.826	ENSEEUG00000010466	ZNF408	58	49.061	Erinaceus_europaeus
ENSAMXG00000032642	znf408	54	54.026	ENSFCAG00000029105	ZNF408	92	40.026	Felis_catus
ENSAMXG00000032642	znf408	95	38.167	ENSFHEG00000016754	-	99	36.766	Fundulus_heteroclitus
ENSAMXG00000032642	znf408	98	37.796	ENSGAFG00000018557	-	98	37.284	Gambusia_affinis
ENSAMXG00000032642	znf408	91	39.605	ENSGGOG00000010152	ZNF408	90	39.373	Gorilla_gorilla
ENSAMXG00000032642	znf408	54	53.141	ENSLAFG00000027848	ZNF408	57	53.927	Loxodonta_africana
ENSAMXG00000032642	znf408	97	37.644	ENSMICG00000045320	ZNF408	93	37.677	Microcebus_murinus
ENSAMXG00000032642	znf408	55	54.822	ENSMPUG00000005490	ZNF408	90	39.726	Mustela_putorius_furo
ENSAMXG00000032642	znf408	81	39.450	ENSNGAG00000000309	Zfp408	93	36.627	Nannospalax_galili
ENSAMXG00000032642	znf408	70	49.884	ENSNLEG00000014132	ZNF408	70	50.116	Nomascus_leucogenys
ENSAMXG00000032642	znf408	94	39.102	ENSOCUG00000010953	ZNF408	94	39.234	Oryctolagus_cuniculus
ENSAMXG00000032642	znf408	92	40.061	ENSOGAG00000034080	ZNF408	93	40.061	Otolemur_garnettii
ENSAMXG00000032642	znf408	97	37.661	ENSPPAG00000034993	ZNF408	93	38.243	Pan_paniscus
ENSAMXG00000032642	znf408	94	38.533	ENSPPRG00000016866	ZNF408	92	39.495	Panthera_pardus
ENSAMXG00000032642	znf408	54	54.026	ENSPTIG00000015467	ZNF408	93	40.293	Panthera_tigris_altaica
ENSAMXG00000032642	znf408	65	54.545	ENSPTRG00000003551	ZNF408	90	39.863	Pan_troglodytes
ENSAMXG00000032642	znf408	98	37.887	ENSPFOG00000001760	-	98	45.833	Poecilia_formosa
ENSAMXG00000032642	znf408	79	41.593	ENSPLAG00000019895	-	98	37.975	Poecilia_latipinna
ENSAMXG00000032642	znf408	72	43.186	ENSPMEG00000021147	-	81	43.186	Poecilia_mexicana
ENSAMXG00000032642	znf408	98	37.378	ENSPREG00000017068	-	98	37.313	Poecilia_reticulata
ENSAMXG00000032642	znf408	64	54.615	ENSPPYG00000003318	ZNF408	68	54.872	Pongo_abelii
ENSAMXG00000032642	znf408	66	52.525	ENSPCAG00000014001	ZNF408	51	53.283	Procavia_capensis
ENSAMXG00000032642	znf408	79	44.286	ENSPCOG00000028698	ZNF408	93	38.968	Propithecus_coquereli
ENSAMXG00000032642	znf408	94	37.885	ENSPVAG00000015791	ZNF408	92	37.816	Pteropus_vampyrus
ENSAMXG00000032642	znf408	91	39.091	ENSSBOG00000033023	ZNF408	90	38.723	Saimiri_boliviensis_boliviensis
ENSAMXG00000032642	znf408	91	40.639	ENSSSCG00000023097	ZNF408	87	39.891	Sus_scrofa
ENSAMXG00000032642	znf408	56	63.478	ENSTBEG00000004260	ZNF408	66	63.913	Tupaia_belangeri
ENSAMXG00000032642	znf408	74	47.732	ENSUAMG00000026154	ZNF408	93	38.107	Ursus_americanus
ENSAMXG00000032642	znf408	97	38.442	ENSUMAG00000014405	ZNF408	93	38.156	Ursus_maritimus
ENSAMXG00000032642	znf408	97	39.080	ENSVVUG00000026805	ZNF408	90	39.040	Vulpes_vulpes
ENSAMXG00000032642	znf408	60	47.430	ENSXETG00000001980	znf408	100	46.963	Xenopus_tropicalis
ENSAMXG00000032642	znf408	76	53.846	ENSXCOG00000002869	-	96	53.846	Xiphophorus_couchianus
ENSAMXG00000032642	znf408	76	53.846	ENSXMAG00000018347	-	96	53.846	Xiphophorus_maculatus