EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000032669 (Gene tree)
Gene ID: 103042553
Gene Symbol: SRP54
Alias: zgc:55842|zgc:85713
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 10555 bases
Position: chr9:23242265-23252819
Accession: 103042553
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000041826	SRP54	PF00448.22	1.8e-77	1	1
ENSAMXP00000041826	SRP54_N	PF02881.19	5.3e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000033153	-	6620	XM_007240478	ENSAMXP00000041826	504 (aa)	XP_007240540	W5K5T3

Gene Model

Click here to download ENSAMXG00000032669's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000032669's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000032669	SRP54	100	95.635	ENSG00000100883	SRP54	100	97.674	Homo_sapiens
ENSAMXG00000032669	SRP54	100	97.619	ENSAPOG00000011314	srp54	100	97.619	Acanthochromis_polyacanthus
ENSAMXG00000032669	SRP54	100	95.635	ENSAMEG00000015544	SRP54	100	95.635	Ailuropoda_melanoleuca
ENSAMXG00000032669	SRP54	89	96.659	ENSACIG00000022831	srp54	97	96.659	Amphilophus_citrinellus
ENSAMXG00000032669	SRP54	100	97.619	ENSAOCG00000019401	srp54	100	97.619	Amphiprion_ocellaris
ENSAMXG00000032669	SRP54	100	97.619	ENSAPEG00000001977	srp54	100	97.619	Amphiprion_percula
ENSAMXG00000032669	SRP54	100	98.016	ENSATEG00000013877	srp54	100	98.016	Anabas_testudineus
ENSAMXG00000032669	SRP54	94	95.359	ENSAPLG00000010125	SRP54	95	95.359	Anas_platyrhynchos
ENSAMXG00000032669	SRP54	100	95.437	ENSACAG00000002103	-	100	95.437	Anolis_carolinensis
ENSAMXG00000032669	SRP54	65	79.456	ENSACAG00000001124	-	100	79.456	Anolis_carolinensis
ENSAMXG00000032669	SRP54	86	92.627	ENSACAG00000010631	-	100	92.627	Anolis_carolinensis
ENSAMXG00000032669	SRP54	100	95.635	ENSANAG00000022133	SRP54	100	95.635	Aotus_nancymaae
ENSAMXG00000032669	SRP54	100	97.817	ENSACLG00000015866	srp54	100	97.817	Astatotilapia_calliptera
ENSAMXG00000032669	SRP54	100	95.635	ENSBTAG00000019085	SRP54	100	95.635	Bos_taurus
ENSAMXG00000032669	SRP54	98	73.092	WBGene00009012	F21D5.7	100	73.092	Caenorhabditis_elegans
ENSAMXG00000032669	SRP54	100	95.635	ENSCJAG00000006581	SRP54	100	95.635	Callithrix_jacchus
ENSAMXG00000032669	SRP54	100	95.635	ENSCAFG00000013331	SRP54	100	95.635	Canis_familiaris
ENSAMXG00000032669	SRP54	100	95.635	ENSCAFG00020023427	SRP54	100	95.635	Canis_lupus_dingo
ENSAMXG00000032669	SRP54	100	95.635	ENSCHIG00000026345	SRP54	100	95.635	Capra_hircus
ENSAMXG00000032669	SRP54	94	84.000	ENSTSYG00000035333	-	93	84.000	Carlito_syrichta
ENSAMXG00000032669	SRP54	100	95.437	ENSTSYG00000002680	-	100	95.437	Carlito_syrichta
ENSAMXG00000032669	SRP54	94	61.837	ENSCAPG00000008780	SRP54	100	61.837	Cavia_aperea
ENSAMXG00000032669	SRP54	100	95.238	ENSCPOG00000003691	SRP54	100	95.238	Cavia_porcellus
ENSAMXG00000032669	SRP54	90	95.238	ENSCCAG00000024179	SRP54	100	95.465	Cebus_capucinus
ENSAMXG00000032669	SRP54	100	95.635	ENSCATG00000034083	SRP54	100	95.635	Cercocebus_atys
ENSAMXG00000032669	SRP54	100	95.635	ENSCLAG00000015076	SRP54	100	95.635	Chinchilla_lanigera
ENSAMXG00000032669	SRP54	100	95.635	ENSCSAG00000015575	SRP54	100	95.635	Chlorocebus_sabaeus
ENSAMXG00000032669	SRP54	95	84.200	ENSCHOG00000008986	SRP54	100	84.200	Choloepus_hoffmanni
ENSAMXG00000032669	SRP54	100	96.032	ENSCPBG00000026195	SRP54	100	96.032	Chrysemys_picta_bellii
ENSAMXG00000032669	SRP54	100	82.341	ENSCING00000007380	-	100	82.341	Ciona_intestinalis
ENSAMXG00000032669	SRP54	100	95.635	ENSCANG00000028532	SRP54	100	95.635	Colobus_angolensis_palliatus
ENSAMXG00000032669	SRP54	100	96.032	ENSCGRG00001009525	-	100	96.032	Cricetulus_griseus_chok1gshd
ENSAMXG00000032669	SRP54	76	96.883	ENSCGRG00000009453	-	89	96.883	Cricetulus_griseus_crigri
ENSAMXG00000032669	SRP54	100	96.825	ENSCSEG00000012392	srp54	100	96.825	Cynoglossus_semilaevis
ENSAMXG00000032669	SRP54	100	97.619	ENSCVAG00000010395	srp54	100	97.619	Cyprinodon_variegatus
ENSAMXG00000032669	SRP54	100	98.810	ENSDARG00000098367	srp54	100	98.810	Danio_rerio
ENSAMXG00000032669	SRP54	100	95.635	ENSDNOG00000032525	SRP54	100	95.635	Dasypus_novemcinctus
ENSAMXG00000032669	SRP54	89	80.973	ENSDORG00000005159	-	98	80.973	Dipodomys_ordii
ENSAMXG00000032669	SRP54	96	79.794	FBgn0010747	Srp54k	98	79.317	Drosophila_melanogaster
ENSAMXG00000032669	SRP54	100	94.841	ENSETEG00000016307	-	100	94.841	Echinops_telfairi
ENSAMXG00000032669	SRP54	83	55.742	ENSETEG00000012102	-	99	55.742	Echinops_telfairi
ENSAMXG00000032669	SRP54	100	88.889	ENSEBUG00000009437	-	100	88.889	Eptatretus_burgeri
ENSAMXG00000032669	SRP54	100	95.635	ENSEASG00005002057	SRP54	100	95.635	Equus_asinus_asinus
ENSAMXG00000032669	SRP54	99	95.382	ENSECAG00000018042	SRP54	98	95.382	Equus_caballus
ENSAMXG00000032669	SRP54	100	79.762	ENSEEUG00000001511	SRP54	100	79.762	Erinaceus_europaeus
ENSAMXG00000032669	SRP54	100	97.421	ENSELUG00000003395	srp54	100	97.421	Esox_lucius
ENSAMXG00000032669	SRP54	100	95.833	ENSFCAG00000032033	SRP54	100	95.833	Felis_catus
ENSAMXG00000032669	SRP54	100	95.635	ENSFALG00000005995	SRP54	100	95.635	Ficedula_albicollis
ENSAMXG00000032669	SRP54	100	95.635	ENSFDAG00000016767	SRP54	100	95.635	Fukomys_damarensis
ENSAMXG00000032669	SRP54	100	97.619	ENSFHEG00000004263	srp54	100	97.619	Fundulus_heteroclitus
ENSAMXG00000032669	SRP54	95	92.259	ENSGMOG00000011391	srp54	100	92.259	Gadus_morhua
ENSAMXG00000032669	SRP54	100	95.635	ENSGALG00000023135	SRP54	100	95.635	Gallus_gallus
ENSAMXG00000032669	SRP54	100	97.817	ENSGAFG00000011586	srp54	100	97.817	Gambusia_affinis
ENSAMXG00000032669	SRP54	100	97.619	ENSGACG00000004181	srp54	100	97.619	Gasterosteus_aculeatus
ENSAMXG00000032669	SRP54	100	96.032	ENSGAGG00000014766	SRP54	100	96.032	Gopherus_agassizii
ENSAMXG00000032669	SRP54	100	95.635	ENSGGOG00000002926	SRP54	100	95.635	Gorilla_gorilla
ENSAMXG00000032669	SRP54	100	97.817	ENSHBUG00000005678	srp54	100	97.817	Haplochromis_burtoni
ENSAMXG00000032669	SRP54	100	95.635	ENSHGLG00000002850	SRP54	100	95.635	Heterocephalus_glaber_female
ENSAMXG00000032669	SRP54	100	66.535	ENSHGLG00100007281	-	100	66.535	Heterocephalus_glaber_male
ENSAMXG00000032669	SRP54	100	95.635	ENSHGLG00100005263	SRP54	100	95.635	Heterocephalus_glaber_male
ENSAMXG00000032669	SRP54	100	96.230	ENSHCOG00000021127	srp54	100	96.230	Hippocampus_comes
ENSAMXG00000032669	SRP54	100	98.810	ENSIPUG00000001420	srp54	100	98.810	Ictalurus_punctatus
ENSAMXG00000032669	SRP54	100	95.635	ENSSTOG00000016023	SRP54	100	95.635	Ictidomys_tridecemlineatus
ENSAMXG00000032669	SRP54	100	91.270	ENSJJAG00000013417	-	100	91.270	Jaculus_jaculus
ENSAMXG00000032669	SRP54	87	74.773	ENSJJAG00000016404	-	100	74.773	Jaculus_jaculus
ENSAMXG00000032669	SRP54	100	97.619	ENSKMAG00000007707	srp54	100	97.619	Kryptolebias_marmoratus
ENSAMXG00000032669	SRP54	100	97.619	ENSLBEG00000018690	srp54	100	97.619	Labrus_bergylta
ENSAMXG00000032669	SRP54	100	97.619	ENSLBEG00000021122	srp54	100	97.619	Labrus_bergylta
ENSAMXG00000032669	SRP54	100	95.635	ENSLACG00000017890	SRP54	100	95.635	Latimeria_chalumnae
ENSAMXG00000032669	SRP54	100	97.817	ENSLOCG00000009440	srp54	100	97.817	Lepisosteus_oculatus
ENSAMXG00000032669	SRP54	100	95.635	ENSLAFG00000012007	SRP54	100	95.635	Loxodonta_africana
ENSAMXG00000032669	SRP54	100	95.635	ENSMFAG00000044371	SRP54	100	95.635	Macaca_fascicularis
ENSAMXG00000032669	SRP54	100	95.635	ENSMMUG00000015073	FAM177A1	100	95.635	Macaca_mulatta
ENSAMXG00000032669	SRP54	100	95.635	ENSMNEG00000006947	SRP54	100	95.635	Macaca_nemestrina
ENSAMXG00000032669	SRP54	100	95.635	ENSMLEG00000042251	SRP54	100	95.635	Mandrillus_leucophaeus
ENSAMXG00000032669	SRP54	100	97.817	ENSMAMG00000004803	srp54	100	97.817	Mastacembelus_armatus
ENSAMXG00000032669	SRP54	100	97.817	ENSMZEG00005027528	srp54	100	97.817	Maylandia_zebra
ENSAMXG00000032669	SRP54	100	91.304	ENSMGAG00000012481	SRP54	100	91.304	Meleagris_gallopavo
ENSAMXG00000032669	SRP54	100	95.833	ENSMAUG00000014447	-	100	95.833	Mesocricetus_auratus
ENSAMXG00000032669	SRP54	100	95.635	ENSMICG00000010270	SRP54	100	95.635	Microcebus_murinus
ENSAMXG00000032669	SRP54	87	95.682	ENSMOCG00000000948	-	100	95.682	Microtus_ochrogaster
ENSAMXG00000032669	SRP54	90	94.934	ENSMMOG00000020303	srp54	99	94.934	Mola_mola
ENSAMXG00000032669	SRP54	100	95.635	ENSMODG00000012925	-	100	95.635	Monodelphis_domestica
ENSAMXG00000032669	SRP54	100	95.635	ENSMODG00000023150	-	100	95.635	Monodelphis_domestica
ENSAMXG00000032669	SRP54	89	96.205	ENSMALG00000009163	srp54	99	96.205	Monopterus_albus
ENSAMXG00000032669	SRP54	100	95.833	MGP_CAROLIEiJ_G0017754	-	100	95.833	Mus_caroli
ENSAMXG00000032669	SRP54	100	95.833	ENSMUSG00000112449	Srp54b	100	95.833	Mus_musculus
ENSAMXG00000032669	SRP54	100	95.040	ENSMUSG00000079108	Srp54c	100	95.040	Mus_musculus
ENSAMXG00000032669	SRP54	100	95.833	ENSMUSG00000073079	Srp54a	100	95.833	Mus_musculus
ENSAMXG00000032669	SRP54	100	95.833	MGP_PahariEiJ_G0029510	-	100	95.833	Mus_pahari
ENSAMXG00000032669	SRP54	100	95.635	ENSMPUG00000016302	SRP54	100	95.635	Mustela_putorius_furo
ENSAMXG00000032669	SRP54	100	95.040	ENSMLUG00000008958	SRP54	100	95.040	Myotis_lucifugus
ENSAMXG00000032669	SRP54	100	86.310	ENSNGAG00000019806	-	100	86.310	Nannospalax_galili
ENSAMXG00000032669	SRP54	87	97.727	ENSNBRG00000006000	srp54	100	97.727	Neolamprologus_brichardi
ENSAMXG00000032669	SRP54	100	95.635	ENSNLEG00000003496	SRP54	100	95.635	Nomascus_leucogenys
ENSAMXG00000032669	SRP54	67	98.214	ENSMEUG00000000138	-	76	98.214	Notamacropus_eugenii
ENSAMXG00000032669	SRP54	58	96.721	ENSOPRG00000014502	-	60	96.721	Ochotona_princeps
ENSAMXG00000032669	SRP54	100	95.635	ENSODEG00000004865	SRP54	100	95.635	Octodon_degus
ENSAMXG00000032669	SRP54	100	97.817	ENSONIG00000011768	srp54	100	97.817	Oreochromis_niloticus
ENSAMXG00000032669	SRP54	100	95.635	ENSOANG00000014051	SRP54	100	95.635	Ornithorhynchus_anatinus
ENSAMXG00000032669	SRP54	100	95.040	ENSOCUG00000007838	SRP54	100	95.040	Oryctolagus_cuniculus
ENSAMXG00000032669	SRP54	100	98.016	ENSORLG00000010027	srp54	100	98.016	Oryzias_latipes
ENSAMXG00000032669	SRP54	100	98.016	ENSORLG00020001878	srp54	100	98.016	Oryzias_latipes_hni
ENSAMXG00000032669	SRP54	100	98.016	ENSORLG00015021866	srp54	100	98.016	Oryzias_latipes_hsok
ENSAMXG00000032669	SRP54	100	98.214	ENSOMEG00000020952	srp54	100	98.214	Oryzias_melastigma
ENSAMXG00000032669	SRP54	100	95.635	ENSOGAG00000012188	SRP54	100	95.635	Otolemur_garnettii
ENSAMXG00000032669	SRP54	100	95.635	ENSOARG00000007160	SRP54	100	95.635	Ovis_aries
ENSAMXG00000032669	SRP54	100	95.635	ENSPPAG00000017434	SRP54	100	95.635	Pan_paniscus
ENSAMXG00000032669	SRP54	100	95.040	ENSPPRG00000014047	SRP54	100	95.040	Panthera_pardus
ENSAMXG00000032669	SRP54	100	95.833	ENSPTIG00000000744	SRP54	96	95.833	Panthera_tigris_altaica
ENSAMXG00000032669	SRP54	100	95.635	ENSPTRG00000006259	FAM177A1	100	95.635	Pan_troglodytes
ENSAMXG00000032669	SRP54	100	95.635	ENSPANG00000023853	SRP54	100	95.635	Papio_anubis
ENSAMXG00000032669	SRP54	100	98.016	ENSPKIG00000001953	srp54	100	98.016	Paramormyrops_kingsleyae
ENSAMXG00000032669	SRP54	100	95.833	ENSPSIG00000006476	SRP54	100	95.833	Pelodiscus_sinensis
ENSAMXG00000032669	SRP54	91	94.565	ENSPMGG00000004127	srp54	99	94.565	Periophthalmus_magnuspinnatus
ENSAMXG00000032669	SRP54	100	83.929	ENSPEMG00000019634	-	100	83.929	Peromyscus_maniculatus_bairdii
ENSAMXG00000032669	SRP54	100	90.476	ENSPMAG00000006078	-	100	90.476	Petromyzon_marinus
ENSAMXG00000032669	SRP54	100	95.635	ENSPCIG00000016175	SRP54	100	95.635	Phascolarctos_cinereus
ENSAMXG00000032669	SRP54	100	97.817	ENSPFOG00000008870	srp54	100	97.817	Poecilia_formosa
ENSAMXG00000032669	SRP54	100	97.817	ENSPLAG00000009889	srp54	100	97.817	Poecilia_latipinna
ENSAMXG00000032669	SRP54	100	97.817	ENSPMEG00000008601	srp54	100	97.817	Poecilia_mexicana
ENSAMXG00000032669	SRP54	100	97.817	ENSPREG00000004505	srp54	100	97.817	Poecilia_reticulata
ENSAMXG00000032669	SRP54	100	90.873	ENSPPYG00000005739	SRP54	100	90.873	Pongo_abelii
ENSAMXG00000032669	SRP54	100	91.865	ENSPCAG00000006268	SRP54	100	91.865	Procavia_capensis
ENSAMXG00000032669	SRP54	100	93.663	ENSPCOG00000022473	SRP54	100	93.663	Propithecus_coquereli
ENSAMXG00000032669	SRP54	63	96.809	ENSPVAG00000010056	SRP54	82	96.809	Pteropus_vampyrus
ENSAMXG00000032669	SRP54	100	97.817	ENSPNYG00000009717	srp54	100	97.817	Pundamilia_nyererei
ENSAMXG00000032669	SRP54	100	99.802	ENSPNAG00000008544	srp54	100	99.802	Pygocentrus_nattereri
ENSAMXG00000032669	SRP54	100	95.635	ENSRNOG00000032776	Srp54a	100	95.635	Rattus_norvegicus
ENSAMXG00000032669	SRP54	100	95.635	ENSRROG00000041292	SRP54	100	95.635	Rhinopithecus_roxellana
ENSAMXG00000032669	SRP54	86	51.474	YPR088C	SRP54	95	47.126	Saccharomyces_cerevisiae
ENSAMXG00000032669	SRP54	94	95.359	ENSSBOG00000035145	SRP54	100	95.359	Saimiri_boliviensis_boliviensis
ENSAMXG00000032669	SRP54	68	95.044	ENSSHAG00000000671	SRP54	100	95.044	Sarcophilus_harrisii
ENSAMXG00000032669	SRP54	100	97.619	ENSSFOG00015013920	srp54	100	97.619	Scleropages_formosus
ENSAMXG00000032669	SRP54	100	91.760	ENSSMAG00000002441	srp54	100	91.760	Scophthalmus_maximus
ENSAMXG00000032669	SRP54	100	97.817	ENSSDUG00000018586	srp54	100	97.817	Seriola_dumerili
ENSAMXG00000032669	SRP54	100	97.619	ENSSLDG00000010476	srp54	100	97.619	Seriola_lalandi_dorsalis
ENSAMXG00000032669	SRP54	100	95.635	ENSSARG00000002744	SRP54	100	95.635	Sorex_araneus
ENSAMXG00000032669	SRP54	100	96.032	ENSSPUG00000013101	SRP54	100	96.032	Sphenodon_punctatus
ENSAMXG00000032669	SRP54	100	97.619	ENSSPAG00000002354	srp54	100	97.619	Stegastes_partitus
ENSAMXG00000032669	SRP54	100	95.635	ENSSSCG00000001955	SRP54	100	95.635	Sus_scrofa
ENSAMXG00000032669	SRP54	94	95.359	ENSTGUG00000011945	-	95	95.359	Taeniopygia_guttata
ENSAMXG00000032669	SRP54	100	97.619	ENSTRUG00000007057	srp54	100	97.619	Takifugu_rubripes
ENSAMXG00000032669	SRP54	100	97.024	ENSTNIG00000002589	srp54	100	97.024	Tetraodon_nigroviridis
ENSAMXG00000032669	SRP54	89	86.801	ENSTBEG00000011409	SRP54	100	86.801	Tupaia_belangeri
ENSAMXG00000032669	SRP54	100	86.310	ENSTTRG00000000928	SRP54	100	86.310	Tursiops_truncatus
ENSAMXG00000032669	SRP54	52	96.183	ENSUAMG00000012385	SRP54	100	96.183	Ursus_americanus
ENSAMXG00000032669	SRP54	100	95.635	ENSUMAG00000011234	SRP54	100	95.635	Ursus_maritimus
ENSAMXG00000032669	SRP54	94	95.148	ENSVPAG00000005668	SRP54	100	95.148	Vicugna_pacos
ENSAMXG00000032669	SRP54	100	95.635	ENSVVUG00000019962	SRP54	100	95.635	Vulpes_vulpes
ENSAMXG00000032669	SRP54	100	81.262	ENSXETG00000012290	srp54	100	81.262	Xenopus_tropicalis
ENSAMXG00000032669	SRP54	88	97.517	ENSXCOG00000004658	srp54	96	97.517	Xiphophorus_couchianus
ENSAMXG00000032669	SRP54	100	97.817	ENSXMAG00000018315	srp54	100	97.817	Xiphophorus_maculatus