EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000032729 (Gene tree)
Gene ID: 103028730
Gene Symbol: rab42a
Alias: wu:fk59e12|zgc:73061
Full Name: ras-related protein Rab-39B-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 7727 bases
Position: chrAPWO02001043.1:13430-21156
Accession: 103028730
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000039461	MMR_HSR1	PF01926.23	0.00011	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000055621	-	5120	XM_007241230	ENSAMXP00000039461	213 (aa)	XP_007241292	UPI000440CD2B

Gene Model

Click here to download ENSAMXG00000032729's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000032729's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000032729	rab42a	100	36.620	ENSAMXG00000039486	zgc:171927	99	36.620
ENSAMXG00000032729	rab42a	71	34.437	ENSAMXG00000033907	hrasb	85	33.537
ENSAMXG00000032729	rab42a	76	30.864	ENSAMXG00000033390	rap1aa	82	30.864
ENSAMXG00000032729	rab42a	89	46.842	ENSAMXG00000036772	rab2a	89	46.842
ENSAMXG00000032729	rab42a	99	36.321	ENSAMXG00000029712	rab25b	97	36.321
ENSAMXG00000032729	rab42a	71	35.526	ENSAMXG00000033764	si:ch73-116o1.2	79	34.940
ENSAMXG00000032729	rab42a	74	45.860	ENSAMXG00000024632	rab11al	75	45.860
ENSAMXG00000032729	rab42a	77	30.723	ENSAMXG00000006018	rab34b	69	31.638
ENSAMXG00000032729	rab42a	98	39.535	ENSAMXG00000040126	-	76	39.535
ENSAMXG00000032729	rab42a	84	41.573	ENSAMXG00000034850	-	87	41.573
ENSAMXG00000032729	rab42a	77	35.976	ENSAMXG00000043717	rab5c	88	32.524
ENSAMXG00000032729	rab42a	100	59.624	ENSAMXG00000041657	rab39ba	100	59.624
ENSAMXG00000032729	rab42a	74	32.911	ENSAMXG00000040611	rabl2	69	32.911
ENSAMXG00000032729	rab42a	77	39.521	ENSAMXG00000026059	RAB9A	82	39.521
ENSAMXG00000032729	rab42a	79	42.012	ENSAMXG00000033470	RAB15	96	39.810
ENSAMXG00000032729	rab42a	74	40.764	ENSAMXG00000032547	rab6a	75	40.127
ENSAMXG00000032729	rab42a	69	44.595	ENSAMXG00000040286	rab33ba	62	44.595
ENSAMXG00000032729	rab42a	96	37.264	ENSAMXG00000043951	rab15	96	37.264
ENSAMXG00000032729	rab42a	76	34.940	ENSAMXG00000032027	rab7a	79	34.940
ENSAMXG00000032729	rab42a	99	38.208	ENSAMXG00000040879	rab25a	96	38.208
ENSAMXG00000032729	rab42a	75	46.875	ENSAMXG00000009935	rab30	64	46.875
ENSAMXG00000032729	rab42a	98	39.048	ENSAMXG00000009640	rab14	97	39.048
ENSAMXG00000032729	rab42a	81	36.313	ENSAMXG00000032663	si:dkey-13a21.4	82	36.313
ENSAMXG00000032729	rab42a	77	43.902	ENSAMXG00000040604	-	80	43.902
ENSAMXG00000032729	rab42a	98	38.278	ENSAMXG00000042655	rab11bb	95	38.278
ENSAMXG00000032729	rab42a	98	38.756	ENSAMXG00000042419	rab3c	93	38.756
ENSAMXG00000032729	rab42a	96	37.379	ENSAMXG00000040460	zgc:101559	80	37.379
ENSAMXG00000032729	rab42a	77	38.922	ENSAMXG00000026476	rab9b	74	38.922
ENSAMXG00000032729	rab42a	85	32.796	ENSAMXG00000031957	zgc:100918	89	32.796
ENSAMXG00000032729	rab42a	77	44.512	ENSAMXG00000039865	rab35b	80	44.512
ENSAMXG00000032729	rab42a	75	33.540	ENSAMXG00000017217	kras	98	30.890
ENSAMXG00000032729	rab42a	78	33.333	ENSAMXG00000036330	RAB38	79	33.333
ENSAMXG00000032729	rab42a	97	34.951	ENSAMXG00000004630	rab6ba	94	34.951
ENSAMXG00000032729	rab42a	77	37.725	ENSAMXG00000025889	RAB9A	82	37.725
ENSAMXG00000032729	rab42a	77	30.588	ENSAMXG00000033069	si:cabz01085950.1	82	30.588
ENSAMXG00000032729	rab42a	94	39.901	ENSAMXG00000003155	rab11a	93	39.901
ENSAMXG00000032729	rab42a	75	34.161	ENSAMXG00000012327	nras	96	33.333
ENSAMXG00000032729	rab42a	96	33.824	ENSAMXG00000013054	rab22a	97	33.824
ENSAMXG00000032729	rab42a	100	59.624	ENSAMXG00000003717	rab39bb	100	59.624
ENSAMXG00000032729	rab42a	87	40.323	ENSAMXG00000004882	rab12	82	38.835
ENSAMXG00000032729	rab42a	98	38.756	ENSAMXG00000037623	-	95	38.756
ENSAMXG00000032729	rab42a	76	34.940	ENSAMXG00000002254	-	79	34.940
ENSAMXG00000032729	rab42a	96	32.536	ENSAMXG00000043003	rab34a	79	32.536
ENSAMXG00000032729	rab42a	77	34.146	ENSAMXG00000035919	rab5ab	75	34.146
ENSAMXG00000032729	rab42a	71	33.553	ENSAMXG00000010919	mras	78	33.537
ENSAMXG00000032729	rab42a	100	34.234	ENSAMXG00000037428	-	99	34.091
ENSAMXG00000032729	rab42a	77	41.818	ENSAMXG00000042073	rab18b	80	41.818
ENSAMXG00000032729	rab42a	71	35.099	ENSAMXG00000010334	rras	80	34.146
ENSAMXG00000032729	rab42a	87	31.156	ENSAMXG00000035770	rasl11a	76	31.156
ENSAMXG00000032729	rab42a	98	38.756	ENSAMXG00000030712	rab13	97	38.756
ENSAMXG00000032729	rab42a	80	43.860	ENSAMXG00000039737	RAB19	78	43.860
ENSAMXG00000032729	rab42a	76	35.185	ENSAMXG00000036179	rab5aa	74	35.185
ENSAMXG00000032729	rab42a	71	34.437	ENSAMXG00000035885	hrasa	85	33.537
ENSAMXG00000032729	rab42a	69	34.459	ENSAMXG00000029130	-	79	34.459
ENSAMXG00000032729	rab42a	73	33.974	ENSAMXG00000014960	rab23	72	34.868
ENSAMXG00000032729	rab42a	73	34.395	ENSAMXG00000017266	rab36	60	34.395
ENSAMXG00000032729	rab42a	84	42.458	ENSAMXG00000003547	rab1ba	79	42.458
ENSAMXG00000032729	rab42a	82	43.429	ENSAMXG00000038243	si:dkey-16l2.16	83	50.000
ENSAMXG00000032729	rab42a	73	40.385	ENSAMXG00000033216	rab41	79	40.385
ENSAMXG00000032729	rab42a	77	35.976	ENSAMXG00000037267	-	93	32.843
ENSAMXG00000032729	rab42a	94	40.299	ENSAMXG00000032564	rab1ab	98	40.299

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000032729	rab42a	100	90.367	ENSAPOG00000009188	rab42a	100	92.202	Acanthochromis_polyacanthus
ENSAMXG00000032729	rab42a	100	90.367	ENSACIG00000003102	rab42a	100	91.284	Amphilophus_citrinellus
ENSAMXG00000032729	rab42a	100	89.450	ENSAOCG00000012921	rab42a	83	90.826	Amphiprion_ocellaris
ENSAMXG00000032729	rab42a	100	89.450	ENSAPEG00000007713	rab42a	83	90.826	Amphiprion_percula
ENSAMXG00000032729	rab42a	100	89.908	ENSATEG00000009052	rab42a	100	89.908	Anabas_testudineus
ENSAMXG00000032729	rab42a	100	91.705	ENSACLG00000007514	rab42a	100	91.705	Astatotilapia_calliptera
ENSAMXG00000032729	rab42a	100	88.991	ENSCSEG00000010582	rab42a	100	88.991	Cynoglossus_semilaevis
ENSAMXG00000032729	rab42a	100	95.305	ENSDARG00000034215	rab42a	100	95.305	Danio_rerio
ENSAMXG00000032729	rab42a	100	47.664	ENSDARG00000102580	CU571310.1	99	47.664	Danio_rerio
ENSAMXG00000032729	rab42a	100	89.352	ENSELUG00000010345	rab42a	100	89.352	Esox_lucius
ENSAMXG00000032729	rab42a	100	89.908	ENSFHEG00000013106	rab42a	100	89.908	Fundulus_heteroclitus
ENSAMXG00000032729	rab42a	100	88.532	ENSGAFG00000002141	rab42a	100	88.532	Gambusia_affinis
ENSAMXG00000032729	rab42a	100	91.705	ENSHBUG00000015126	rab42a	82	91.705	Haplochromis_burtoni
ENSAMXG00000032729	rab42a	100	95.305	ENSIPUG00000011376	rab42a	100	95.305	Ictalurus_punctatus
ENSAMXG00000032729	rab42a	100	88.991	ENSKMAG00000007267	rab42a	100	89.908	Kryptolebias_marmoratus
ENSAMXG00000032729	rab42a	100	89.862	ENSLBEG00000001193	rab42a	100	90.783	Labrus_bergylta
ENSAMXG00000032729	rab42a	100	65.728	ENSLACG00000012755	-	100	65.728	Latimeria_chalumnae
ENSAMXG00000032729	rab42a	100	51.402	ENSLOCG00000015825	-	99	51.402	Lepisosteus_oculatus
ENSAMXG00000032729	rab42a	100	87.793	ENSLOCG00000003453	rab42a	100	87.793	Lepisosteus_oculatus
ENSAMXG00000032729	rab42a	100	90.367	ENSMAMG00000002296	rab42a	100	91.743	Mastacembelus_armatus
ENSAMXG00000032729	rab42a	100	91.705	ENSMZEG00005012460	rab42a	82	91.705	Maylandia_zebra
ENSAMXG00000032729	rab42a	100	88.532	ENSMMOG00000014358	rab42a	100	88.532	Mola_mola
ENSAMXG00000032729	rab42a	100	91.743	ENSNBRG00000021487	rab42a	82	91.743	Neolamprologus_brichardi
ENSAMXG00000032729	rab42a	100	90.826	ENSORLG00000022335	rab42a	100	90.826	Oryzias_latipes
ENSAMXG00000032729	rab42a	100	90.826	ENSORLG00020013895	rab42a	100	90.826	Oryzias_latipes_hni
ENSAMXG00000032729	rab42a	100	90.826	ENSORLG00015004273	rab42a	100	90.826	Oryzias_latipes_hsok
ENSAMXG00000032729	rab42a	100	90.826	ENSOMEG00000020418	rab42a	100	90.826	Oryzias_melastigma
ENSAMXG00000032729	rab42a	99	49.057	ENSPKIG00000015234	-	99	49.057	Paramormyrops_kingsleyae
ENSAMXG00000032729	rab42a	100	79.812	ENSPKIG00000021215	-	100	79.812	Paramormyrops_kingsleyae
ENSAMXG00000032729	rab42a	92	94.924	ENSPMGG00000024112	rab42a	90	94.924	Periophthalmus_magnuspinnatus
ENSAMXG00000032729	rab42a	100	88.532	ENSPFOG00000004838	rab42a	82	88.532	Poecilia_formosa
ENSAMXG00000032729	rab42a	100	88.532	ENSPLAG00000005628	rab42a	100	88.532	Poecilia_latipinna
ENSAMXG00000032729	rab42a	100	88.532	ENSPMEG00000019497	rab42a	100	88.532	Poecilia_mexicana
ENSAMXG00000032729	rab42a	100	88.532	ENSPREG00000013962	rab42a	100	88.532	Poecilia_reticulata
ENSAMXG00000032729	rab42a	100	91.705	ENSPNYG00000010325	rab42a	82	91.705	Pundamilia_nyererei
ENSAMXG00000032729	rab42a	100	99.061	ENSPNAG00000016567	rab42a	100	99.061	Pygocentrus_nattereri
ENSAMXG00000032729	rab42a	100	89.202	ENSSFOG00015020732	rab42a	100	89.202	Scleropages_formosus
ENSAMXG00000032729	rab42a	100	47.664	ENSSFOG00015016000	-	97	47.664	Scleropages_formosus
ENSAMXG00000032729	rab42a	100	88.532	ENSSMAG00000020311	rab42a	100	88.532	Scophthalmus_maximus
ENSAMXG00000032729	rab42a	100	90.367	ENSSDUG00000011851	rab42a	100	90.367	Seriola_dumerili
ENSAMXG00000032729	rab42a	100	90.367	ENSSLDG00000020354	rab42a	100	90.367	Seriola_lalandi_dorsalis
ENSAMXG00000032729	rab42a	100	90.367	ENSSPAG00000016167	rab42a	100	91.743	Stegastes_partitus
ENSAMXG00000032729	rab42a	100	91.743	ENSTRUG00000010224	rab42a	100	91.743	Takifugu_rubripes
ENSAMXG00000032729	rab42a	100	88.991	ENSXCOG00000003428	rab42a	100	88.991	Xiphophorus_couchianus
ENSAMXG00000032729	rab42a	100	88.991	ENSXMAG00000028376	rab42a	100	88.991	Xiphophorus_maculatus