EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000032796 (Gene tree)
Gene ID: 103045937
Gene Symbol: msi2a
Alias: cb746|fi47b09|msi2|wu:fb02d08|wu:fi32d12|wu:fi47b09
Full Name: RNA-binding protein Musashi homolog 2-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 284101 bases
Position: chr20:7361696-7645796
Accession: 103045937
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000036429	RRM_1	PF00076.22	4.6e-34	1	2
ENSAMXP00000036429	RRM_1	PF00076.22	4.6e-34	2	2
ENSAMXP00000048182	RRM_1	PF00076.22	7.3e-34	1	2
ENSAMXP00000048182	RRM_1	PF00076.22	7.3e-34	2	2
ENSAMXP00000049152	RRM_1	PF00076.22	7.3e-34	1	2
ENSAMXP00000049152	RRM_1	PF00076.22	7.3e-34	2	2
ENSAMXP00000036710	RRM_1	PF00076.22	1.4e-29	1	2
ENSAMXP00000036710	RRM_1	PF00076.22	1.4e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000043472	-	5561	XM_022680980	ENSAMXP00000049152	389 (aa)	XP_022536701	UPI000BBD8BCF
ENSAMXT00000037427	-	1741	XM_022680981	ENSAMXP00000048182	389 (aa)	XP_022536702	-
ENSAMXT00000041773	-	933	-	ENSAMXP00000036710	310 (aa)	-	-
ENSAMXT00000040494	-	5381	XM_022680987	ENSAMXP00000036429	329 (aa)	XP_022536708	UPI000BBD628A

Gene Model

Click here to download ENSAMXG00000032796's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000032796's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000032796	msi2a	53	43.023	ENSAMXG00000007065	hnrnpa3	94	36.782
ENSAMXG00000032796	msi2a	52	41.860	ENSAMXG00000006296	hnrnpa1a	64	37.647
ENSAMXG00000032796	msi2a	56	36.905	ENSAMXG00000024951	-	89	33.750
ENSAMXG00000032796	msi2a	75	41.379	ENSAMXG00000019066	dazap1	60	41.379
ENSAMXG00000032796	msi2a	57	46.535	ENSAMXG00000002560	hnrnpaba	66	45.455
ENSAMXG00000032796	msi2a	100	94.344	ENSAMXG00000010474	msi2b	100	94.859
ENSAMXG00000032796	msi2a	53	50.857	ENSAMXG00000001495	hnrnpdl	86	38.246
ENSAMXG00000032796	msi2a	60	36.145	ENSAMXG00000037730	-	64	36.239
ENSAMXG00000032796	msi2a	62	43.602	ENSAMXG00000001477	hnrnpd	67	44.601
ENSAMXG00000032796	msi2a	50	35.294	ENSAMXG00000030795	tardbpl	56	35.294
ENSAMXG00000032796	msi2a	94	75.828	ENSAMXG00000038960	msi1	75	76.159
ENSAMXG00000032796	msi2a	57	48.947	ENSAMXG00000039814	hnrnpabb	65	46.919

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000032796	msi2a	100	91.793	ENSG00000153944	MSI2	100	93.617	Homo_sapiens
ENSAMXG00000032796	msi2a	97	96.414	ENSAPOG00000001658	msi2a	100	96.296	Acanthochromis_polyacanthus
ENSAMXG00000032796	msi2a	94	86.462	ENSAMEG00000002697	MSI2	99	89.877	Ailuropoda_melanoleuca
ENSAMXG00000032796	msi2a	100	90.000	ENSACIG00000009475	msi2a	100	89.059	Amphilophus_citrinellus
ENSAMXG00000032796	msi2a	58	78.667	ENSAOCG00000014822	msi2a	69	78.667	Amphiprion_ocellaris
ENSAMXG00000032796	msi2a	100	90.127	ENSAPEG00000007706	msi2a	100	89.809	Amphiprion_percula
ENSAMXG00000032796	msi2a	94	94.265	ENSATEG00000003301	-	100	94.624	Anabas_testudineus
ENSAMXG00000032796	msi2a	97	96.414	ENSATEG00000010498	msi2a	100	96.296	Anabas_testudineus
ENSAMXG00000032796	msi2a	89	96.739	ENSACAG00000005452	MSI2	88	83.662	Anolis_carolinensis
ENSAMXG00000032796	msi2a	100	91.793	ENSANAG00000037827	MSI2	100	93.617	Aotus_nancymaae
ENSAMXG00000032796	msi2a	97	96.016	ENSACLG00000007752	msi2a	100	95.885	Astatotilapia_calliptera
ENSAMXG00000032796	msi2a	94	92.857	ENSBTAG00000004406	MSI2	97	94.805	Bos_taurus
ENSAMXG00000032796	msi2a	71	59.127	WBGene00003423	msi-1	79	59.127	Caenorhabditis_elegans
ENSAMXG00000032796	msi2a	100	91.793	ENSCJAG00000013998	MSI2	100	93.617	Callithrix_jacchus
ENSAMXG00000032796	msi2a	94	85.761	ENSCAFG00020025620	MSI2	81	88.438	Canis_lupus_dingo
ENSAMXG00000032796	msi2a	100	90.881	ENSCHIG00000016580	MSI2	100	92.705	Capra_hircus
ENSAMXG00000032796	msi2a	94	87.986	ENSCPOG00000034042	MSI2	99	90.106	Cavia_porcellus
ENSAMXG00000032796	msi2a	100	91.793	ENSCCAG00000033927	MSI2	100	93.617	Cebus_capucinus
ENSAMXG00000032796	msi2a	99	92.478	ENSCATG00000040879	MSI2	100	93.617	Cercocebus_atys
ENSAMXG00000032796	msi2a	100	85.549	ENSCLAG00000014325	MSI2	100	88.761	Chinchilla_lanigera
ENSAMXG00000032796	msi2a	100	91.793	ENSCSAG00000005633	MSI2	100	93.617	Chlorocebus_sabaeus
ENSAMXG00000032796	msi2a	90	67.616	ENSCHOG00000008660	MSI2	83	90.196	Choloepus_hoffmanni
ENSAMXG00000032796	msi2a	94	96.569	ENSCPBG00000009942	MSI2	95	89.179	Chrysemys_picta_bellii
ENSAMXG00000032796	msi2a	87	52.683	ENSCING00000018579	-	97	53.604	Ciona_intestinalis
ENSAMXG00000032796	msi2a	61	68.224	ENSCSAVG00000010397	-	69	68.224	Ciona_savignyi
ENSAMXG00000032796	msi2a	99	92.478	ENSCANG00000036414	MSI2	100	89.846	Colobus_angolensis_palliatus
ENSAMXG00000032796	msi2a	100	91.212	ENSCGRG00001013330	Msi2	100	93.030	Cricetulus_griseus_chok1gshd
ENSAMXG00000032796	msi2a	94	86.196	ENSCGRG00000003141	Msi2	100	89.602	Cricetulus_griseus_crigri
ENSAMXG00000032796	msi2a	57	75.543	ENSCSEG00000013549	msi2a	100	75.543	Cynoglossus_semilaevis
ENSAMXG00000032796	msi2a	100	81.763	ENSCSEG00000003266	-	100	81.459	Cynoglossus_semilaevis
ENSAMXG00000032796	msi2a	78	74.872	ENSCSEG00000013557	msi2a	83	83.077	Cynoglossus_semilaevis
ENSAMXG00000032796	msi2a	100	94.087	ENSCVAG00000017075	msi2a	100	96.296	Cyprinodon_variegatus
ENSAMXG00000032796	msi2a	100	90.746	ENSDARG00000033901	msi2a	100	90.488	Danio_rerio
ENSAMXG00000032796	msi2a	100	99.203	ENSDARG00000032614	msi2b	100	100.000	Danio_rerio
ENSAMXG00000032796	msi2a	94	92.734	ENSDNOG00000014501	MSI2	100	94.810	Dasypus_novemcinctus
ENSAMXG00000032796	msi2a	51	98.230	ENSDORG00000028440	-	100	98.230	Dipodomys_ordii
ENSAMXG00000032796	msi2a	78	79.798	ENSDORG00000005394	Msi2	84	83.333	Dipodomys_ordii
ENSAMXG00000032796	msi2a	97	56.303	FBgn0260943	Rbp6	88	66.667	Drosophila_melanogaster
ENSAMXG00000032796	msi2a	67	74.342	ENSETEG00000012450	-	64	74.342	Echinops_telfairi
ENSAMXG00000032796	msi2a	93	59.425	ENSEBUG00000006732	msi2a	87	63.987	Eptatretus_burgeri
ENSAMXG00000032796	msi2a	94	89.967	ENSEASG00005002965	MSI2	97	83.191	Equus_asinus_asinus
ENSAMXG00000032796	msi2a	94	90.476	ENSECAG00000011435	MSI2	100	86.479	Equus_caballus
ENSAMXG00000032796	msi2a	82	76.772	ENSEEUG00000007810	MSI2	100	79.134	Erinaceus_europaeus
ENSAMXG00000032796	msi2a	100	92.677	ENSELUG00000001361	msi2b	100	92.424	Esox_lucius
ENSAMXG00000032796	msi2a	97	95.491	ENSELUG00000011747	msi2a	96	95.664	Esox_lucius
ENSAMXG00000032796	msi2a	100	91.793	ENSFCAG00000041686	MSI2	100	93.617	Felis_catus
ENSAMXG00000032796	msi2a	57	75.641	ENSFCAG00000033787	-	82	75.641	Felis_catus
ENSAMXG00000032796	msi2a	94	86.462	ENSFDAG00000016118	MSI2	100	89.877	Fukomys_damarensis
ENSAMXG00000032796	msi2a	97	96.414	ENSFHEG00000000084	msi2a	96	96.026	Fundulus_heteroclitus
ENSAMXG00000032796	msi2a	55	94.231	ENSGMOG00000007596	-	100	94.231	Gadus_morhua
ENSAMXG00000032796	msi2a	100	85.838	ENSGALG00000005567	MSI2	100	89.049	Gallus_gallus
ENSAMXG00000032796	msi2a	96	81.875	ENSGAFG00000006974	msi2a	90	96.026	Gambusia_affinis
ENSAMXG00000032796	msi2a	96	91.020	ENSGAGG00000016542	MSI2	100	86.557	Gopherus_agassizii
ENSAMXG00000032796	msi2a	94	92.478	ENSGGOG00000013182	MSI2	100	89.846	Gorilla_gorilla
ENSAMXG00000032796	msi2a	97	96.016	ENSHBUG00000020800	msi2a	100	95.885	Haplochromis_burtoni
ENSAMXG00000032796	msi2a	100	76.590	ENSHGLG00000012444	MSI2	100	79.827	Heterocephalus_glaber_female
ENSAMXG00000032796	msi2a	75	79.710	ENSHGLG00100003744	MSI2	100	85.096	Heterocephalus_glaber_male
ENSAMXG00000032796	msi2a	51	98.246	ENSHGLG00100004028	-	87	98.246	Heterocephalus_glaber_male
ENSAMXG00000032796	msi2a	97	96.016	ENSHCOG00000000266	msi2a	100	87.990	Hippocampus_comes
ENSAMXG00000032796	msi2a	95	82.642	ENSHCOG00000017241	-	98	71.642	Hippocampus_comes
ENSAMXG00000032796	msi2a	100	93.830	ENSIPUG00000003732	msi2b	100	94.087	Ictalurus_punctatus
ENSAMXG00000032796	msi2a	95	98.770	ENSIPUG00000021097	msi2a	100	98.765	Ictalurus_punctatus
ENSAMXG00000032796	msi2a	94	87.986	ENSSTOG00000007884	MSI2	99	90.106	Ictidomys_tridecemlineatus
ENSAMXG00000032796	msi2a	51	98.230	ENSJJAG00000009467	-	100	98.230	Jaculus_jaculus
ENSAMXG00000032796	msi2a	75	82.412	ENSJJAG00000006292	-	100	82.412	Jaculus_jaculus
ENSAMXG00000032796	msi2a	100	93.316	ENSKMAG00000009494	msi2a	100	93.059	Kryptolebias_marmoratus
ENSAMXG00000032796	msi2a	97	96.414	ENSLBEG00000007061	msi2a	100	89.809	Labrus_bergylta
ENSAMXG00000032796	msi2a	95	79.300	ENSLBEG00000026223	-	100	79.009	Labrus_bergylta
ENSAMXG00000032796	msi2a	51	95.294	ENSLACG00000016798	MSI2	98	93.407	Latimeria_chalumnae
ENSAMXG00000032796	msi2a	100	96.144	ENSLOCG00000004675	msi2b	100	96.144	Lepisosteus_oculatus
ENSAMXG00000032796	msi2a	99	92.478	ENSMFAG00000003775	MSI2	100	89.846	Macaca_fascicularis
ENSAMXG00000032796	msi2a	94	92.478	ENSMMUG00000002069	MSI2	100	89.846	Macaca_mulatta
ENSAMXG00000032796	msi2a	100	91.793	ENSMNEG00000045275	MSI2	100	93.617	Macaca_nemestrina
ENSAMXG00000032796	msi2a	99	92.478	ENSMLEG00000033888	MSI2	100	89.846	Mandrillus_leucophaeus
ENSAMXG00000032796	msi2a	97	96.813	ENSMAMG00000002488	-	99	96.026	Mastacembelus_armatus
ENSAMXG00000032796	msi2a	97	96.414	ENSMAMG00000010503	msi2a	100	96.296	Mastacembelus_armatus
ENSAMXG00000032796	msi2a	100	93.921	ENSMZEG00005007676	msi2a	100	95.885	Maylandia_zebra
ENSAMXG00000032796	msi2a	100	85.014	ENSMAUG00000003862	Msi2	100	88.218	Mesocricetus_auratus
ENSAMXG00000032796	msi2a	100	73.874	ENSMICG00000032913	-	100	75.976	Microcebus_murinus
ENSAMXG00000032796	msi2a	100	91.793	ENSMICG00000013598	-	100	93.617	Microcebus_murinus
ENSAMXG00000032796	msi2a	100	85.260	ENSMOCG00000005820	Msi2	100	88.473	Microtus_ochrogaster
ENSAMXG00000032796	msi2a	94	83.871	ENSMMOG00000008348	msi2a	89	91.139	Mola_mola
ENSAMXG00000032796	msi2a	75	80.676	ENSMODG00000014790	MSI2	100	86.058	Monodelphis_domestica
ENSAMXG00000032796	msi2a	100	95.425	ENSMALG00000000071	msi2a	100	96.296	Monopterus_albus
ENSAMXG00000032796	msi2a	100	91.489	MGP_CAROLIEiJ_G0016948	Msi2	100	98.230	Mus_caroli
ENSAMXG00000032796	msi2a	100	91.489	ENSMUSG00000069769	Msi2	100	98.230	Mus_musculus
ENSAMXG00000032796	msi2a	100	91.489	MGP_PahariEiJ_G0018079	Msi2	100	98.230	Mus_pahari
ENSAMXG00000032796	msi2a	100	91.489	MGP_SPRETEiJ_G0017795	Msi2	100	98.230	Mus_spretus
ENSAMXG00000032796	msi2a	94	93.182	ENSMPUG00000015377	MSI2	97	95.130	Mustela_putorius_furo
ENSAMXG00000032796	msi2a	94	92.857	ENSMLUG00000007865	MSI2	97	94.805	Myotis_lucifugus
ENSAMXG00000032796	msi2a	100	85.260	ENSNGAG00000017807	Msi2	100	88.473	Nannospalax_galili
ENSAMXG00000032796	msi2a	100	93.830	ENSNBRG00000014596	msi2a	100	93.573	Neolamprologus_brichardi
ENSAMXG00000032796	msi2a	94	92.035	ENSNLEG00000008059	MSI2	95	96.172	Nomascus_leucogenys
ENSAMXG00000032796	msi2a	67	86.184	ENSOPRG00000000872	-	64	86.184	Ochotona_princeps
ENSAMXG00000032796	msi2a	100	85.549	ENSODEG00000011974	MSI2	100	88.761	Octodon_degus
ENSAMXG00000032796	msi2a	58	96.026	ENSONIG00000001972	msi2a	84	96.026	Oreochromis_niloticus
ENSAMXG00000032796	msi2a	93	93.361	ENSOANG00000005667	MSI2	99	77.156	Ornithorhynchus_anatinus
ENSAMXG00000032796	msi2a	94	93.182	ENSOCUG00000010440	MSI2	97	95.130	Oryctolagus_cuniculus
ENSAMXG00000032796	msi2a	100	94.087	ENSORLG00000009671	msi2a	100	96.296	Oryzias_latipes
ENSAMXG00000032796	msi2a	97	96.414	ENSORLG00020021556	msi2a	100	96.296	Oryzias_latipes_hni
ENSAMXG00000032796	msi2a	100	94.087	ENSORLG00015004592	msi2a	100	96.296	Oryzias_latipes_hsok
ENSAMXG00000032796	msi2a	100	94.087	ENSOMEG00000000146	msi2a	100	96.296	Oryzias_melastigma
ENSAMXG00000032796	msi2a	94	88.636	ENSOGAG00000005621	MSI2	99	90.584	Otolemur_garnettii
ENSAMXG00000032796	msi2a	94	86.420	ENSPPAG00000037697	MSI2	100	89.846	Pan_paniscus
ENSAMXG00000032796	msi2a	94	93.182	ENSPPRG00000001848	MSI2	94	95.130	Panthera_pardus
ENSAMXG00000032796	msi2a	72	77.215	ENSPTIG00000021873	-	90	77.215	Panthera_tigris_altaica
ENSAMXG00000032796	msi2a	94	85.852	ENSPTIG00000021678	MSI2	96	89.423	Panthera_tigris_altaica
ENSAMXG00000032796	msi2a	94	92.478	ENSPTRG00000009437	MSI2	100	89.846	Pan_troglodytes
ENSAMXG00000032796	msi2a	100	91.793	ENSPANG00000022319	MSI2	100	93.617	Papio_anubis
ENSAMXG00000032796	msi2a	96	90.506	ENSPKIG00000007038	-	96	93.827	Paramormyrops_kingsleyae
ENSAMXG00000032796	msi2a	100	96.226	ENSPSIG00000008618	MSI2	100	87.961	Pelodiscus_sinensis
ENSAMXG00000032796	msi2a	100	89.490	ENSPMGG00000005888	msi2a	100	89.172	Periophthalmus_magnuspinnatus
ENSAMXG00000032796	msi2a	51	98.230	ENSPEMG00000021793	-	100	98.230	Peromyscus_maniculatus_bairdii
ENSAMXG00000032796	msi2a	100	85.311	ENSPCIG00000006063	MSI2	100	88.169	Phascolarctos_cinereus
ENSAMXG00000032796	msi2a	57	94.286	ENSPFOG00000019337	MSI2	92	94.286	Poecilia_formosa
ENSAMXG00000032796	msi2a	58	92.958	ENSPLAG00000000436	msi2a	76	92.958	Poecilia_latipinna
ENSAMXG00000032796	msi2a	58	81.818	ENSPMEG00000013247	msi2a	80	81.818	Poecilia_mexicana
ENSAMXG00000032796	msi2a	97	96.414	ENSPREG00000000881	msi2a	100	89.189	Poecilia_reticulata
ENSAMXG00000032796	msi2a	94	88.703	ENSPPYG00000008244	-	100	91.213	Pongo_abelii
ENSAMXG00000032796	msi2a	57	88.235	ENSPCAG00000010552	MSI2	100	65.690	Procavia_capensis
ENSAMXG00000032796	msi2a	52	97.710	ENSPCOG00000019195	-	93	97.710	Propithecus_coquereli
ENSAMXG00000032796	msi2a	94	85.034	ENSPVAG00000017053	MSI2	100	87.075	Pteropus_vampyrus
ENSAMXG00000032796	msi2a	100	93.921	ENSPNYG00000018393	msi2a	100	95.885	Pundamilia_nyererei
ENSAMXG00000032796	msi2a	100	95.116	ENSPNAG00000000844	msi2b	100	95.116	Pygocentrus_nattereri
ENSAMXG00000032796	msi2a	100	98.715	ENSPNAG00000014957	msi2a	100	98.715	Pygocentrus_nattereri
ENSAMXG00000032796	msi2a	94	92.473	ENSRNOG00000025338	Msi2	100	94.624	Rattus_norvegicus
ENSAMXG00000032796	msi2a	52	97.391	ENSRROG00000034421	-	92	98.246	Rhinopithecus_roxellana
ENSAMXG00000032796	msi2a	94	92.889	ENSSBOG00000026425	MSI2	100	89.846	Saimiri_boliviensis_boliviensis
ENSAMXG00000032796	msi2a	94	87.346	ENSSHAG00000008672	MSI2	100	90.769	Sarcophilus_harrisii
ENSAMXG00000032796	msi2a	94	90.584	ENSSFOG00015021687	-	97	94.595	Scleropages_formosus
ENSAMXG00000032796	msi2a	95	86.611	ENSSFOG00015012168	msi2b	100	73.594	Scleropages_formosus
ENSAMXG00000032796	msi2a	97	96.414	ENSSMAG00000018484	msi2a	100	96.296	Scophthalmus_maximus
ENSAMXG00000032796	msi2a	100	85.841	ENSSDUG00000021968	-	99	95.364	Seriola_dumerili
ENSAMXG00000032796	msi2a	97	96.414	ENSSDUG00000014507	msi2a	100	96.296	Seriola_dumerili
ENSAMXG00000032796	msi2a	97	96.414	ENSSLDG00000017172	msi2a	100	96.296	Seriola_lalandi_dorsalis
ENSAMXG00000032796	msi2a	58	94.304	ENSSPUG00000000913	-	94	94.304	Sphenodon_punctatus
ENSAMXG00000032796	msi2a	97	96.414	ENSSPAG00000017793	msi2a	100	96.296	Stegastes_partitus
ENSAMXG00000032796	msi2a	100	91.793	ENSSSCG00000038505	MSI2	100	95.062	Sus_scrofa
ENSAMXG00000032796	msi2a	75	79.710	ENSTGUG00000008452	MSI2	100	85.096	Taeniopygia_guttata
ENSAMXG00000032796	msi2a	93	96.414	ENSTRUG00000021248	msi2a	100	88.095	Takifugu_rubripes
ENSAMXG00000032796	msi2a	74	78.512	ENSTBEG00000001241	MSI2	73	78.512	Tupaia_belangeri
ENSAMXG00000032796	msi2a	94	86.611	ENSTTRG00000002189	MSI2	91	97.368	Tursiops_truncatus
ENSAMXG00000032796	msi2a	94	93.182	ENSUAMG00000000700	MSI2	96	97.297	Ursus_americanus
ENSAMXG00000032796	msi2a	90	87.594	ENSUMAG00000000505	MSI2	100	96.891	Ursus_maritimus
ENSAMXG00000032796	msi2a	55	83.516	ENSVPAG00000006837	-	62	83.516	Vicugna_pacos
ENSAMXG00000032796	msi2a	100	92.808	ENSVVUG00000011783	MSI2	100	93.709	Vulpes_vulpes
ENSAMXG00000032796	msi2a	100	91.774	ENSXCOG00000006113	msi2a	100	91.517	Xiphophorus_couchianus
ENSAMXG00000032796	msi2a	97	96.414	ENSXMAG00000000608	msi2a	100	96.296	Xiphophorus_maculatus