EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000032952 (Gene tree)
Gene ID: 103024508
Gene Symbol: lsm12b
Alias: lsm12|wu:fe01f11|zgc:66039
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 7469 bases
Position: chr4:17510595-17518063
Accession: 103024508
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000042920	AD	PF09793.9	1.4e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000030277	-	1048	XM_007239748	ENSAMXP00000042920	196 (aa)	XP_007239810	UPI000BBD4EDE

Gene Model

Click here to download ENSAMXG00000032952's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000032952's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000032952	lsm12b	100	84.694	ENSAMXG00000036117	lsm12a	91	84.694

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000032952	lsm12b	100	84.694	ENSG00000161654	LSM12	100	84.694	Homo_sapiens
ENSAMXG00000032952	lsm12b	100	94.898	ENSAPOG00000007907	lsm12b	100	94.898	Acanthochromis_polyacanthus
ENSAMXG00000032952	lsm12b	100	82.915	ENSAMEG00000018321	LSM12	100	82.915	Ailuropoda_melanoleuca
ENSAMXG00000032952	lsm12b	100	92.347	ENSACIG00000008538	lsm12b	100	92.347	Amphilophus_citrinellus
ENSAMXG00000032952	lsm12b	100	94.388	ENSAOCG00000021847	lsm12b	88	94.388	Amphiprion_ocellaris
ENSAMXG00000032952	lsm12b	100	94.388	ENSAPEG00000002252	lsm12b	100	94.388	Amphiprion_percula
ENSAMXG00000032952	lsm12b	100	92.857	ENSATEG00000005705	lsm12b	100	92.857	Anabas_testudineus
ENSAMXG00000032952	lsm12b	100	82.653	ENSACAG00000004618	LSM12	100	82.653	Anolis_carolinensis
ENSAMXG00000032952	lsm12b	100	84.694	ENSANAG00000029011	LSM12	100	84.694	Aotus_nancymaae
ENSAMXG00000032952	lsm12b	100	92.857	ENSACLG00000026332	lsm12b	100	92.857	Astatotilapia_calliptera
ENSAMXG00000032952	lsm12b	100	84.694	ENSBTAG00000016252	LSM12	100	84.694	Bos_taurus
ENSAMXG00000032952	lsm12b	100	84.694	ENSCJAG00000048480	LSM12	100	84.694	Callithrix_jacchus
ENSAMXG00000032952	lsm12b	100	84.694	ENSCAFG00000014379	LSM12	92	84.694	Canis_familiaris
ENSAMXG00000032952	lsm12b	100	84.694	ENSCAFG00020012173	LSM12	100	84.694	Canis_lupus_dingo
ENSAMXG00000032952	lsm12b	100	84.694	ENSCHIG00000018175	LSM12	100	84.694	Capra_hircus
ENSAMXG00000032952	lsm12b	100	84.694	ENSTSYG00000036361	LSM12	100	84.694	Carlito_syrichta
ENSAMXG00000032952	lsm12b	83	80.864	ENSCAPG00000009647	LSM12	89	80.864	Cavia_aperea
ENSAMXG00000032952	lsm12b	100	83.673	ENSCPOG00000012860	LSM12	100	83.673	Cavia_porcellus
ENSAMXG00000032952	lsm12b	100	84.694	ENSCCAG00000032905	LSM12	100	84.694	Cebus_capucinus
ENSAMXG00000032952	lsm12b	100	84.694	ENSCATG00000030577	-	100	84.694	Cercocebus_atys
ENSAMXG00000032952	lsm12b	100	84.184	ENSCLAG00000015759	LSM12	100	84.184	Chinchilla_lanigera
ENSAMXG00000032952	lsm12b	100	84.694	ENSCSAG00000003486	LSM12	100	84.694	Chlorocebus_sabaeus
ENSAMXG00000032952	lsm12b	56	85.321	ENSCHOG00000001198	LSM12	100	85.321	Choloepus_hoffmanni
ENSAMXG00000032952	lsm12b	100	84.694	ENSCPBG00000027105	LSM12	100	84.694	Chrysemys_picta_bellii
ENSAMXG00000032952	lsm12b	100	84.694	ENSCANG00000043328	LSM12	100	84.694	Colobus_angolensis_palliatus
ENSAMXG00000032952	lsm12b	100	84.694	ENSCGRG00001002094	Lsm12	100	84.694	Cricetulus_griseus_chok1gshd
ENSAMXG00000032952	lsm12b	89	77.011	ENSCGRG00000004316	Lsm12	98	77.011	Cricetulus_griseus_crigri
ENSAMXG00000032952	lsm12b	100	92.857	ENSCSEG00000008434	lsm12b	100	92.857	Cynoglossus_semilaevis
ENSAMXG00000032952	lsm12b	100	93.367	ENSCVAG00000008755	lsm12b	100	93.367	Cyprinodon_variegatus
ENSAMXG00000032952	lsm12b	100	93.878	ENSDARG00000109510	lsm12b	100	93.878	Danio_rerio
ENSAMXG00000032952	lsm12b	100	85.714	ENSDARG00000028848	lsm12a	100	85.714	Danio_rerio
ENSAMXG00000032952	lsm12b	100	84.694	ENSDNOG00000002418	LSM12	91	84.694	Dasypus_novemcinctus
ENSAMXG00000032952	lsm12b	100	84.694	ENSDORG00000016381	Lsm12	100	84.694	Dipodomys_ordii
ENSAMXG00000032952	lsm12b	83	35.542	FBgn0030364	Lsm12	76	35.329	Drosophila_melanogaster
ENSAMXG00000032952	lsm12b	73	33.544	FBgn0036057	CG14164	83	33.544	Drosophila_melanogaster
ENSAMXG00000032952	lsm12b	88	75.723	ENSETEG00000011012	-	99	75.723	Echinops_telfairi
ENSAMXG00000032952	lsm12b	100	84.184	ENSETEG00000008374	LSM12	100	84.184	Echinops_telfairi
ENSAMXG00000032952	lsm12b	85	68.263	ENSEBUG00000016299	lsm12a	92	68.263	Eptatretus_burgeri
ENSAMXG00000032952	lsm12b	100	84.694	ENSEASG00005010155	LSM12	100	84.694	Equus_asinus_asinus
ENSAMXG00000032952	lsm12b	100	84.694	ENSECAG00000009071	LSM12	100	84.694	Equus_caballus
ENSAMXG00000032952	lsm12b	78	84.967	ENSEEUG00000002419	-	100	84.967	Erinaceus_europaeus
ENSAMXG00000032952	lsm12b	100	90.816	ENSELUG00000015538	lsm12b	100	86.224	Esox_lucius
ENSAMXG00000032952	lsm12b	100	89.286	ENSELUG00000000256	-	100	89.286	Esox_lucius
ENSAMXG00000032952	lsm12b	100	84.694	ENSFCAG00000037021	LSM12	100	84.694	Felis_catus
ENSAMXG00000032952	lsm12b	80	81.410	ENSFDAG00000008954	LSM12	91	81.410	Fukomys_damarensis
ENSAMXG00000032952	lsm12b	100	92.347	ENSFHEG00000019913	lsm12b	100	92.347	Fundulus_heteroclitus
ENSAMXG00000032952	lsm12b	81	93.038	ENSGMOG00000015449	lsm12b	100	93.038	Gadus_morhua
ENSAMXG00000032952	lsm12b	78	85.621	ENSGALG00000039803	LSM12	100	85.621	Gallus_gallus
ENSAMXG00000032952	lsm12b	100	92.857	ENSGAFG00000011829	lsm12b	100	92.857	Gambusia_affinis
ENSAMXG00000032952	lsm12b	81	93.671	ENSGACG00000003428	lsm12b	100	93.671	Gasterosteus_aculeatus
ENSAMXG00000032952	lsm12b	100	84.184	ENSGAGG00000021965	LSM12	100	84.184	Gopherus_agassizii
ENSAMXG00000032952	lsm12b	100	84.694	ENSGGOG00000010589	-	100	84.694	Gorilla_gorilla
ENSAMXG00000032952	lsm12b	85	92.814	ENSHBUG00000007667	lsm12b	74	92.814	Haplochromis_burtoni
ENSAMXG00000032952	lsm12b	100	84.694	ENSHGLG00000011411	LSM12	100	84.694	Heterocephalus_glaber_female
ENSAMXG00000032952	lsm12b	79	84.416	ENSHGLG00100000241	LSM12	82	84.416	Heterocephalus_glaber_male
ENSAMXG00000032952	lsm12b	100	92.347	ENSHCOG00000002094	lsm12b	100	92.347	Hippocampus_comes
ENSAMXG00000032952	lsm12b	100	94.388	ENSIPUG00000014800	lsm12	100	94.388	Ictalurus_punctatus
ENSAMXG00000032952	lsm12b	99	82.474	ENSIPUG00000008936	lsm12a	99	82.474	Ictalurus_punctatus
ENSAMXG00000032952	lsm12b	100	84.694	ENSSTOG00000007403	LSM12	100	84.694	Ictidomys_tridecemlineatus
ENSAMXG00000032952	lsm12b	96	75.263	ENSJJAG00000011793	-	100	75.263	Jaculus_jaculus
ENSAMXG00000032952	lsm12b	100	83.673	ENSJJAG00000004364	-	100	84.685	Jaculus_jaculus
ENSAMXG00000032952	lsm12b	80	72.956	ENSJJAG00000014652	-	95	72.956	Jaculus_jaculus
ENSAMXG00000032952	lsm12b	85	94.611	ENSKMAG00000007704	lsm12b	56	94.611	Kryptolebias_marmoratus
ENSAMXG00000032952	lsm12b	100	94.898	ENSLBEG00000027999	lsm12b	100	94.898	Labrus_bergylta
ENSAMXG00000032952	lsm12b	100	86.735	ENSLACG00000015981	LSM12	100	86.735	Latimeria_chalumnae
ENSAMXG00000032952	lsm12b	100	91.327	ENSLOCG00000013079	lsm12b	99	91.327	Lepisosteus_oculatus
ENSAMXG00000032952	lsm12b	100	84.694	ENSLAFG00000005202	LSM12	100	84.694	Loxodonta_africana
ENSAMXG00000032952	lsm12b	100	84.694	ENSMFAG00000031376	LSM12	100	84.694	Macaca_fascicularis
ENSAMXG00000032952	lsm12b	100	84.694	ENSMMUG00000006804	LSM12	100	84.694	Macaca_mulatta
ENSAMXG00000032952	lsm12b	65	72.414	ENSMMUG00000042106	-	100	72.414	Macaca_mulatta
ENSAMXG00000032952	lsm12b	100	84.694	ENSMNEG00000030594	-	100	84.694	Macaca_nemestrina
ENSAMXG00000032952	lsm12b	100	84.694	ENSMLEG00000039934	LSM12	100	84.694	Mandrillus_leucophaeus
ENSAMXG00000032952	lsm12b	100	94.388	ENSMAMG00000004279	lsm12b	100	94.388	Mastacembelus_armatus
ENSAMXG00000032952	lsm12b	100	92.857	ENSMZEG00005005754	lsm12b	100	92.857	Maylandia_zebra
ENSAMXG00000032952	lsm12b	100	84.694	ENSMICG00000037219	LSM12	100	84.694	Microcebus_murinus
ENSAMXG00000032952	lsm12b	100	72.959	ENSMOCG00000017015	-	86	72.959	Microtus_ochrogaster
ENSAMXG00000032952	lsm12b	100	84.694	ENSMOCG00000019878	-	100	84.694	Microtus_ochrogaster
ENSAMXG00000032952	lsm12b	100	93.878	ENSMMOG00000020848	lsm12b	100	93.878	Mola_mola
ENSAMXG00000032952	lsm12b	100	93.878	ENSMALG00000007578	lsm12b	100	93.878	Monopterus_albus
ENSAMXG00000032952	lsm12b	100	84.184	MGP_CAROLIEiJ_G0017241	Lsm12	100	84.184	Mus_caroli
ENSAMXG00000032952	lsm12b	100	84.694	ENSMUSG00000020922	Lsm12	100	84.694	Mus_musculus
ENSAMXG00000032952	lsm12b	100	77.934	MGP_PahariEiJ_G0018371	Lsm12	100	77.934	Mus_pahari
ENSAMXG00000032952	lsm12b	100	84.184	MGP_SPRETEiJ_G0018084	Lsm12	100	84.685	Mus_spretus
ENSAMXG00000032952	lsm12b	100	85.204	ENSMLUG00000006391	LSM12	100	85.204	Myotis_lucifugus
ENSAMXG00000032952	lsm12b	100	57.635	ENSNGAG00000015429	-	100	57.635	Nannospalax_galili
ENSAMXG00000032952	lsm12b	100	84.694	ENSNGAG00000001870	Lsm12	100	84.694	Nannospalax_galili
ENSAMXG00000032952	lsm12b	100	92.857	ENSNBRG00000006266	lsm12b	100	92.857	Neolamprologus_brichardi
ENSAMXG00000032952	lsm12b	100	84.694	ENSNLEG00000005580	-	100	84.694	Nomascus_leucogenys
ENSAMXG00000032952	lsm12b	85	84.940	ENSMEUG00000007501	-	100	84.940	Notamacropus_eugenii
ENSAMXG00000032952	lsm12b	100	84.694	ENSOPRG00000008552	LSM12	100	84.694	Ochotona_princeps
ENSAMXG00000032952	lsm12b	99	84.536	ENSODEG00000017998	-	99	84.536	Octodon_degus
ENSAMXG00000032952	lsm12b	100	77.041	ENSODEG00000007886	-	74	77.041	Octodon_degus
ENSAMXG00000032952	lsm12b	100	92.857	ENSONIG00000007933	lsm12b	100	92.857	Oreochromis_niloticus
ENSAMXG00000032952	lsm12b	100	82.915	ENSOCUG00000008566	-	100	82.915	Oryctolagus_cuniculus
ENSAMXG00000032952	lsm12b	99	78.462	ENSOCUG00000024823	-	100	78.462	Oryctolagus_cuniculus
ENSAMXG00000032952	lsm12b	99	79.487	ENSOCUG00000021254	-	100	79.487	Oryctolagus_cuniculus
ENSAMXG00000032952	lsm12b	99	78.974	ENSOCUG00000027889	-	100	78.974	Oryctolagus_cuniculus
ENSAMXG00000032952	lsm12b	100	93.878	ENSORLG00000011310	lsm12b	100	93.878	Oryzias_latipes
ENSAMXG00000032952	lsm12b	100	93.878	ENSORLG00020002060	lsm12b	92	93.878	Oryzias_latipes_hni
ENSAMXG00000032952	lsm12b	100	93.878	ENSORLG00015001647	lsm12b	92	93.878	Oryzias_latipes_hsok
ENSAMXG00000032952	lsm12b	100	93.878	ENSOMEG00000006184	lsm12b	92	93.878	Oryzias_melastigma
ENSAMXG00000032952	lsm12b	100	84.694	ENSOGAG00000010489	LSM12	100	84.694	Otolemur_garnettii
ENSAMXG00000032952	lsm12b	100	81.683	ENSOARG00000006589	LSM12	100	81.683	Ovis_aries
ENSAMXG00000032952	lsm12b	100	75.510	ENSPPAG00000034974	-	100	75.510	Pan_paniscus
ENSAMXG00000032952	lsm12b	100	84.694	ENSPPRG00000023420	LSM12	100	84.694	Panthera_pardus
ENSAMXG00000032952	lsm12b	78	84.967	ENSPTIG00000012704	-	82	84.967	Panthera_tigris_altaica
ENSAMXG00000032952	lsm12b	73	84.685	ENSPTIG00000014850	-	100	84.685	Panthera_tigris_altaica
ENSAMXG00000032952	lsm12b	100	84.694	ENSPTRG00000009261	LSM12	100	84.694	Pan_troglodytes
ENSAMXG00000032952	lsm12b	100	84.694	ENSPANG00000021315	-	100	84.694	Papio_anubis
ENSAMXG00000032952	lsm12b	100	92.857	ENSPKIG00000021058	lsm12b	100	92.857	Paramormyrops_kingsleyae
ENSAMXG00000032952	lsm12b	100	83.673	ENSPKIG00000017932	-	100	83.673	Paramormyrops_kingsleyae
ENSAMXG00000032952	lsm12b	100	92.857	ENSPMGG00000021344	lsm12b	100	92.857	Periophthalmus_magnuspinnatus
ENSAMXG00000032952	lsm12b	100	84.694	ENSPEMG00000012199	Lsm12	100	84.694	Peromyscus_maniculatus_bairdii
ENSAMXG00000032952	lsm12b	89	68.000	ENSPMAG00000005461	lsm12a	99	68.000	Petromyzon_marinus
ENSAMXG00000032952	lsm12b	100	84.694	ENSPCIG00000020244	LSM12	100	84.694	Phascolarctos_cinereus
ENSAMXG00000032952	lsm12b	100	92.857	ENSPFOG00000015930	lsm12b	100	92.857	Poecilia_formosa
ENSAMXG00000032952	lsm12b	100	92.857	ENSPLAG00000021089	lsm12b	100	92.857	Poecilia_latipinna
ENSAMXG00000032952	lsm12b	100	92.857	ENSPMEG00000012961	lsm12b	100	92.857	Poecilia_mexicana
ENSAMXG00000032952	lsm12b	87	92.982	ENSPREG00000010236	lsm12b	95	92.982	Poecilia_reticulata
ENSAMXG00000032952	lsm12b	100	84.694	ENSPPYG00000008344	LSM12	100	84.694	Pongo_abelii
ENSAMXG00000032952	lsm12b	81	85.535	ENSPCAG00000008790	LSM12	100	85.535	Procavia_capensis
ENSAMXG00000032952	lsm12b	100	84.694	ENSPCOG00000027951	LSM12	100	84.694	Propithecus_coquereli
ENSAMXG00000032952	lsm12b	100	84.184	ENSPVAG00000013706	LSM12	100	84.184	Pteropus_vampyrus
ENSAMXG00000032952	lsm12b	100	92.857	ENSPNYG00000003386	lsm12b	100	92.857	Pundamilia_nyererei
ENSAMXG00000032952	lsm12b	100	95.408	ENSPNAG00000004186	lsm12b	100	95.408	Pygocentrus_nattereri
ENSAMXG00000032952	lsm12b	100	84.184	ENSPNAG00000018435	lsm12a	100	84.184	Pygocentrus_nattereri
ENSAMXG00000032952	lsm12b	100	84.694	ENSRNOG00000020894	Lsm12	100	84.694	Rattus_norvegicus
ENSAMXG00000032952	lsm12b	100	84.694	ENSRBIG00000027910	LSM12	100	84.694	Rhinopithecus_bieti
ENSAMXG00000032952	lsm12b	99	52.062	ENSRROG00000000537	-	99	52.062	Rhinopithecus_roxellana
ENSAMXG00000032952	lsm12b	100	84.694	ENSRROG00000045530	-	100	84.694	Rhinopithecus_roxellana
ENSAMXG00000032952	lsm12b	100	84.694	ENSSBOG00000025310	LSM12	100	84.694	Saimiri_boliviensis_boliviensis
ENSAMXG00000032952	lsm12b	81	83.544	ENSSHAG00000014914	LSM12	100	83.544	Sarcophilus_harrisii
ENSAMXG00000032952	lsm12b	100	92.347	ENSSFOG00015009612	lsm12	100	92.347	Scleropages_formosus
ENSAMXG00000032952	lsm12b	100	92.347	ENSSFOG00015020392	lsm12a	100	92.347	Scleropages_formosus
ENSAMXG00000032952	lsm12b	100	93.878	ENSSMAG00000008089	lsm12b	100	93.878	Scophthalmus_maximus
ENSAMXG00000032952	lsm12b	100	93.878	ENSSDUG00000012711	lsm12b	100	93.878	Seriola_dumerili
ENSAMXG00000032952	lsm12b	100	93.878	ENSSLDG00000007404	lsm12b	100	93.878	Seriola_lalandi_dorsalis
ENSAMXG00000032952	lsm12b	78	84.314	ENSSARG00000005537	LSM12	100	84.314	Sorex_araneus
ENSAMXG00000032952	lsm12b	100	84.694	ENSSPUG00000011984	LSM12	100	84.694	Sphenodon_punctatus
ENSAMXG00000032952	lsm12b	100	94.388	ENSSPAG00000017058	lsm12b	100	94.388	Stegastes_partitus
ENSAMXG00000032952	lsm12b	100	84.694	ENSSSCG00000032394	LSM12	100	84.694	Sus_scrofa
ENSAMXG00000032952	lsm12b	100	92.857	ENSTRUG00000007121	lsm12b	100	92.857	Takifugu_rubripes
ENSAMXG00000032952	lsm12b	100	92.857	ENSTNIG00000014436	lsm12b	100	92.857	Tetraodon_nigroviridis
ENSAMXG00000032952	lsm12b	100	82.653	ENSTBEG00000012392	-	100	82.653	Tupaia_belangeri
ENSAMXG00000032952	lsm12b	100	84.184	ENSTBEG00000012523	-	100	84.184	Tupaia_belangeri
ENSAMXG00000032952	lsm12b	100	84.694	ENSTTRG00000010433	LSM12	100	84.694	Tursiops_truncatus
ENSAMXG00000032952	lsm12b	100	84.694	ENSUAMG00000006313	LSM12	100	84.694	Ursus_americanus
ENSAMXG00000032952	lsm12b	81	82.278	ENSUMAG00000012987	LSM12	90	82.278	Ursus_maritimus
ENSAMXG00000032952	lsm12b	100	79.592	ENSVPAG00000011145	LSM12	100	79.592	Vicugna_pacos
ENSAMXG00000032952	lsm12b	100	84.694	ENSVVUG00000017581	LSM12	100	84.694	Vulpes_vulpes
ENSAMXG00000032952	lsm12b	82	61.250	ENSXETG00000003371	lsm12	77	61.250	Xenopus_tropicalis
ENSAMXG00000032952	lsm12b	100	92.857	ENSXCOG00000003994	lsm12b	100	92.857	Xiphophorus_couchianus
ENSAMXG00000032952	lsm12b	100	92.857	ENSXMAG00000020950	lsm12b	100	92.857	Xiphophorus_maculatus