EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000033372 (Gene tree)
Gene ID: 103039358
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 39085 bases
Position: chrAPWO02000070.1:1191922-1231006
Accession: 103039358
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000053617	RRM_1	PF00076.22	6.2e-14	1	2
ENSAMXP00000053617	RRM_1	PF00076.22	6.2e-14	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000038381	-	4309	XM_022666620	ENSAMXP00000053617	508 (aa)	XP_022522341	UPI000BBD91C3

Gene Model

Click here to download ENSAMXG00000033372's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000033372's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000033372	rnpc3	96	58.032	ENSG00000185946	RNPC3	100	57.554	Homo_sapiens
ENSAMXG00000033372	rnpc3	99	67.451	ENSAPOG00000017371	rnpc3	99	67.451	Acanthochromis_polyacanthus
ENSAMXG00000033372	rnpc3	96	57.841	ENSAMEG00000001694	RNPC3	94	57.841	Ailuropoda_melanoleuca
ENSAMXG00000033372	rnpc3	99	63.372	ENSACIG00000021043	rnpc3	99	63.372	Amphilophus_citrinellus
ENSAMXG00000033372	rnpc3	99	66.667	ENSAOCG00000014052	rnpc3	98	66.667	Amphiprion_ocellaris
ENSAMXG00000033372	rnpc3	99	66.667	ENSAPEG00000008739	rnpc3	98	66.667	Amphiprion_percula
ENSAMXG00000033372	rnpc3	99	66.151	ENSATEG00000021263	rnpc3	99	66.151	Anabas_testudineus
ENSAMXG00000033372	rnpc3	89	55.629	ENSAPLG00000015605	RNPC3	99	55.629	Anas_platyrhynchos
ENSAMXG00000033372	rnpc3	96	54.806	ENSACAG00000002029	RNPC3	96	54.509	Anolis_carolinensis
ENSAMXG00000033372	rnpc3	96	57.631	ENSANAG00000019950	RNPC3	94	57.631	Aotus_nancymaae
ENSAMXG00000033372	rnpc3	99	65.166	ENSACLG00000014702	rnpc3	99	64.971	Astatotilapia_calliptera
ENSAMXG00000033372	rnpc3	96	58.032	ENSBTAG00000019091	RNPC3	94	58.032	Bos_taurus
ENSAMXG00000033372	rnpc3	96	55.306	ENSCJAG00000035686	RNPC3	94	56.735	Callithrix_jacchus
ENSAMXG00000033372	rnpc3	96	57.551	ENSCAFG00000019972	RNPC3	94	57.551	Canis_familiaris
ENSAMXG00000033372	rnpc3	96	57.551	ENSCAFG00020011300	RNPC3	94	57.551	Canis_lupus_dingo
ENSAMXG00000033372	rnpc3	96	58.000	ENSCHIG00000020361	RNPC3	94	58.032	Capra_hircus
ENSAMXG00000033372	rnpc3	96	57.374	ENSTSYG00000030256	RNPC3	94	56.627	Carlito_syrichta
ENSAMXG00000033372	rnpc3	86	48.190	ENSCAPG00000013600	RNPC3	97	48.753	Cavia_aperea
ENSAMXG00000033372	rnpc3	96	57.347	ENSCPOG00000031638	RNPC3	94	57.831	Cavia_porcellus
ENSAMXG00000033372	rnpc3	96	57.831	ENSCCAG00000024301	RNPC3	94	57.831	Cebus_capucinus
ENSAMXG00000033372	rnpc3	96	58.032	ENSCATG00000002086	RNPC3	94	58.032	Cercocebus_atys
ENSAMXG00000033372	rnpc3	96	43.089	ENSCATG00000035930	-	52	52.137	Cercocebus_atys
ENSAMXG00000033372	rnpc3	96	55.804	ENSCLAG00000005169	RNPC3	94	56.122	Chinchilla_lanigera
ENSAMXG00000033372	rnpc3	96	57.831	ENSCSAG00000001519	RNPC3	94	57.831	Chlorocebus_sabaeus
ENSAMXG00000033372	rnpc3	97	56.827	ENSCPBG00000028311	RNPC3	96	55.823	Chrysemys_picta_bellii
ENSAMXG00000033372	rnpc3	94	36.420	ENSCSAVG00000002800	-	80	50.336	Ciona_savignyi
ENSAMXG00000033372	rnpc3	96	57.631	ENSCANG00000031444	RNPC3	94	57.631	Colobus_angolensis_palliatus
ENSAMXG00000033372	rnpc3	96	56.735	ENSCGRG00001019276	Rnpc3	95	56.735	Cricetulus_griseus_chok1gshd
ENSAMXG00000033372	rnpc3	89	54.867	ENSCGRG00000000053	Rnpc3	99	54.867	Cricetulus_griseus_crigri
ENSAMXG00000033372	rnpc3	52	68.165	ENSCSEG00000013475	rnpc3	99	63.636	Cynoglossus_semilaevis
ENSAMXG00000033372	rnpc3	99	64.147	ENSCVAG00000002645	rnpc3	99	64.147	Cyprinodon_variegatus
ENSAMXG00000033372	rnpc3	99	72.603	ENSDARG00000011247	rnpc3	99	71.820	Danio_rerio
ENSAMXG00000033372	rnpc3	96	56.531	ENSDNOG00000047498	-	94	54.767	Dasypus_novemcinctus
ENSAMXG00000033372	rnpc3	96	56.122	ENSDNOG00000044555	-	94	54.361	Dasypus_novemcinctus
ENSAMXG00000033372	rnpc3	97	57.661	ENSDORG00000027343	Rnpc3	95	57.258	Dipodomys_ordii
ENSAMXG00000033372	rnpc3	97	50.688	ENSEBUG00000002068	rnpc3	97	49.902	Eptatretus_burgeri
ENSAMXG00000033372	rnpc3	96	58.078	ENSEASG00005015957	RNPC3	94	58.078	Equus_asinus_asinus
ENSAMXG00000033372	rnpc3	96	58.149	ENSECAG00000021148	RNPC3	94	58.149	Equus_caballus
ENSAMXG00000033372	rnpc3	99	67.362	ENSELUG00000002264	rnpc3	99	66.667	Esox_lucius
ENSAMXG00000033372	rnpc3	96	57.551	ENSFCAG00000024312	RNPC3	94	57.551	Felis_catus
ENSAMXG00000033372	rnpc3	89	55.604	ENSFALG00000002580	RNPC3	99	59.223	Ficedula_albicollis
ENSAMXG00000033372	rnpc3	96	57.229	ENSFDAG00000019948	RNPC3	95	57.229	Fukomys_damarensis
ENSAMXG00000033372	rnpc3	99	61.341	ENSFHEG00000020647	rnpc3	99	61.067	Fundulus_heteroclitus
ENSAMXG00000033372	rnpc3	99	64.118	ENSGMOG00000019213	rnpc3	99	63.458	Gadus_morhua
ENSAMXG00000033372	rnpc3	97	55.870	ENSGALG00000005162	RNPC3	89	55.734	Gallus_gallus
ENSAMXG00000033372	rnpc3	99	62.768	ENSGAFG00000017236	rnpc3	99	62.768	Gambusia_affinis
ENSAMXG00000033372	rnpc3	99	64.370	ENSGACG00000002048	rnpc3	99	64.479	Gasterosteus_aculeatus
ENSAMXG00000033372	rnpc3	97	57.287	ENSGAGG00000008438	RNPC3	95	56.137	Gopherus_agassizii
ENSAMXG00000033372	rnpc3	96	50.820	ENSGGOG00000026201	-	94	50.820	Gorilla_gorilla
ENSAMXG00000033372	rnpc3	82	66.125	ENSHBUG00000015966	rnpc3	85	66.667	Haplochromis_burtoni
ENSAMXG00000033372	rnpc3	96	57.631	ENSHGLG00000001708	RNPC3	94	57.631	Heterocephalus_glaber_female
ENSAMXG00000033372	rnpc3	96	57.631	ENSHGLG00100003005	RNPC3	94	57.631	Heterocephalus_glaber_male
ENSAMXG00000033372	rnpc3	97	65.996	ENSHCOG00000017135	rnpc3	98	65.996	Hippocampus_comes
ENSAMXG00000033372	rnpc3	99	76.331	ENSIPUG00000002916	rnpc3	99	75.000	Ictalurus_punctatus
ENSAMXG00000033372	rnpc3	96	57.347	ENSSTOG00000025020	RNPC3	94	57.347	Ictidomys_tridecemlineatus
ENSAMXG00000033372	rnpc3	96	57.347	ENSJJAG00000010203	Rnpc3	95	57.347	Jaculus_jaculus
ENSAMXG00000033372	rnpc3	99	63.495	ENSKMAG00000017358	rnpc3	99	64.833	Kryptolebias_marmoratus
ENSAMXG00000033372	rnpc3	52	69.403	ENSLBEG00000024901	rnpc3	98	64.706	Labrus_bergylta
ENSAMXG00000033372	rnpc3	99	57.647	ENSLACG00000005720	RNPC3	93	57.760	Latimeria_chalumnae
ENSAMXG00000033372	rnpc3	99	62.897	ENSLOCG00000007986	rnpc3	99	62.823	Lepisosteus_oculatus
ENSAMXG00000033372	rnpc3	96	57.490	ENSLAFG00000032342	RNPC3	95	57.229	Loxodonta_africana
ENSAMXG00000033372	rnpc3	96	44.196	ENSMFAG00000002917	-	87	45.368	Macaca_fascicularis
ENSAMXG00000033372	rnpc3	96	58.032	ENSMFAG00000002004	RNPC3	94	58.032	Macaca_fascicularis
ENSAMXG00000033372	rnpc3	79	54.762	ENSMMUG00000002098	-	84	54.762	Macaca_mulatta
ENSAMXG00000033372	rnpc3	96	57.831	ENSMMUG00000018039	RNPC3	94	57.831	Macaca_mulatta
ENSAMXG00000033372	rnpc3	96	54.819	ENSMNEG00000033950	RNPC3	94	54.819	Macaca_nemestrina
ENSAMXG00000033372	rnpc3	96	58.032	ENSMLEG00000033628	RNPC3	94	58.032	Mandrillus_leucophaeus
ENSAMXG00000033372	rnpc3	96	42.972	ENSMLEG00000034644	-	94	42.400	Mandrillus_leucophaeus
ENSAMXG00000033372	rnpc3	99	57.476	ENSMAMG00000007496	rnpc3	99	57.864	Mastacembelus_armatus
ENSAMXG00000033372	rnpc3	99	64.162	ENSMZEG00005020233	rnpc3	99	63.969	Maylandia_zebra
ENSAMXG00000033372	rnpc3	89	55.188	ENSMGAG00000006381	RNPC3	99	56.044	Meleagris_gallopavo
ENSAMXG00000033372	rnpc3	96	58.012	ENSMAUG00000001358	Rnpc3	95	58.012	Mesocricetus_auratus
ENSAMXG00000033372	rnpc3	96	57.576	ENSMICG00000029591	RNPC3	94	55.823	Microcebus_murinus
ENSAMXG00000033372	rnpc3	96	57.755	ENSMOCG00000013423	Rnpc3	94	57.755	Microtus_ochrogaster
ENSAMXG00000033372	rnpc3	99	61.811	ENSMMOG00000005309	rnpc3	99	62.205	Mola_mola
ENSAMXG00000033372	rnpc3	97	55.804	ENSMODG00000002946	RNPC3	95	53.768	Monodelphis_domestica
ENSAMXG00000033372	rnpc3	98	62.109	ENSMALG00000015471	rnpc3	99	62.157	Monopterus_albus
ENSAMXG00000033372	rnpc3	96	58.248	MGP_CAROLIEiJ_G0025555	Rnpc3	96	58.248	Mus_caroli
ENSAMXG00000033372	rnpc3	96	57.260	ENSMUSG00000027981	Rnpc3	99	55.844	Mus_musculus
ENSAMXG00000033372	rnpc3	96	57.260	MGP_PahariEiJ_G0027001	Rnpc3	96	57.260	Mus_pahari
ENSAMXG00000033372	rnpc3	96	55.556	MGP_SPRETEiJ_G0026505	Rnpc3	96	56.851	Mus_spretus
ENSAMXG00000033372	rnpc3	96	57.551	ENSMPUG00000007349	RNPC3	94	57.551	Mustela_putorius_furo
ENSAMXG00000033372	rnpc3	96	57.515	ENSMLUG00000028743	RNPC3	95	57.515	Myotis_lucifugus
ENSAMXG00000033372	rnpc3	96	57.551	ENSNGAG00000010939	Rnpc3	95	57.551	Nannospalax_galili
ENSAMXG00000033372	rnpc3	99	65.558	ENSNBRG00000012196	rnpc3	97	65.362	Neolamprologus_brichardi
ENSAMXG00000033372	rnpc3	96	58.032	ENSNLEG00000012013	RNPC3	94	58.032	Nomascus_leucogenys
ENSAMXG00000033372	rnpc3	96	57.831	ENSODEG00000007612	RNPC3	94	57.831	Octodon_degus
ENSAMXG00000033372	rnpc3	99	65.759	ENSONIG00000004770	rnpc3	100	66.802	Oreochromis_niloticus
ENSAMXG00000033372	rnpc3	92	56.476	ENSOANG00000008220	RNPC3	100	56.476	Ornithorhynchus_anatinus
ENSAMXG00000033372	rnpc3	96	54.949	ENSOCUG00000004016	RNPC3	95	57.347	Oryctolagus_cuniculus
ENSAMXG00000033372	rnpc3	100	63.867	ENSORLG00000005694	rnpc3	100	64.062	Oryzias_latipes
ENSAMXG00000033372	rnpc3	100	64.453	ENSORLG00020005513	rnpc3	100	64.648	Oryzias_latipes_hni
ENSAMXG00000033372	rnpc3	100	63.867	ENSORLG00015002179	rnpc3	100	64.062	Oryzias_latipes_hsok
ENSAMXG00000033372	rnpc3	52	68.284	ENSOMEG00000017737	rnpc3	99	64.484	Oryzias_melastigma
ENSAMXG00000033372	rnpc3	96	57.661	ENSOGAG00000026182	RNPC3	94	55.912	Otolemur_garnettii
ENSAMXG00000033372	rnpc3	96	58.000	ENSOARG00000018719	RNPC3	94	58.032	Ovis_aries
ENSAMXG00000033372	rnpc3	96	58.116	ENSPPAG00000037459	RNPC3	94	58.116	Pan_paniscus
ENSAMXG00000033372	rnpc3	97	50.507	ENSPPAG00000030278	-	97	51.116	Pan_paniscus
ENSAMXG00000033372	rnpc3	96	57.959	ENSPPRG00000020246	RNPC3	94	57.959	Panthera_pardus
ENSAMXG00000033372	rnpc3	96	57.959	ENSPTIG00000009887	RNPC3	96	57.959	Panthera_tigris_altaica
ENSAMXG00000033372	rnpc3	97	50.710	ENSPTRG00000044227	-	97	50.304	Pan_troglodytes
ENSAMXG00000033372	rnpc3	96	58.032	ENSPTRG00000033902	RNPC3	94	58.032	Pan_troglodytes
ENSAMXG00000033372	rnpc3	96	58.032	ENSPANG00000012137	RNPC3	94	58.032	Papio_anubis
ENSAMXG00000033372	rnpc3	99	63.953	ENSPKIG00000008828	rnpc3	99	63.938	Paramormyrops_kingsleyae
ENSAMXG00000033372	rnpc3	64	53.354	ENSPSIG00000007396	RNPC3	99	52.252	Pelodiscus_sinensis
ENSAMXG00000033372	rnpc3	99	60.269	ENSPMGG00000011742	rnpc3	99	60.232	Periophthalmus_magnuspinnatus
ENSAMXG00000033372	rnpc3	89	55.088	ENSPEMG00000020112	Rnpc3	99	55.088	Peromyscus_maniculatus_bairdii
ENSAMXG00000033372	rnpc3	97	56.415	ENSPCIG00000004415	-	95	54.379	Phascolarctos_cinereus
ENSAMXG00000033372	rnpc3	100	62.963	ENSPFOG00000009895	rnpc3	100	62.963	Poecilia_formosa
ENSAMXG00000033372	rnpc3	100	63.158	ENSPLAG00000012023	rnpc3	100	63.158	Poecilia_latipinna
ENSAMXG00000033372	rnpc3	100	63.158	ENSPMEG00000003663	rnpc3	100	63.158	Poecilia_mexicana
ENSAMXG00000033372	rnpc3	99	62.818	ENSPREG00000010206	rnpc3	99	62.840	Poecilia_reticulata
ENSAMXG00000033372	rnpc3	80	54.306	ENSPPYG00000001102	RNPC3	93	54.306	Pongo_abelii
ENSAMXG00000033372	rnpc3	99	65.166	ENSPNYG00000020603	rnpc3	99	64.971	Pundamilia_nyererei
ENSAMXG00000033372	rnpc3	100	74.615	ENSPNAG00000000524	rnpc3	92	74.615	Pygocentrus_nattereri
ENSAMXG00000033372	rnpc3	96	58.097	ENSRNOG00000017310	Rnpc3	95	58.097	Rattus_norvegicus
ENSAMXG00000033372	rnpc3	96	53.908	ENSRBIG00000043897	RNPC3	94	53.908	Rhinopithecus_bieti
ENSAMXG00000033372	rnpc3	96	58.032	ENSRROG00000032334	RNPC3	94	58.032	Rhinopithecus_roxellana
ENSAMXG00000033372	rnpc3	96	57.831	ENSSBOG00000024473	RNPC3	95	57.831	Saimiri_boliviensis_boliviensis
ENSAMXG00000033372	rnpc3	96	56.033	ENSSHAG00000011859	RNPC3	95	54.397	Sarcophilus_harrisii
ENSAMXG00000033372	rnpc3	98	68.600	ENSSFOG00015013055	rnpc3	99	67.200	Scleropages_formosus
ENSAMXG00000033372	rnpc3	99	64.023	ENSSMAG00000020346	rnpc3	99	64.023	Scophthalmus_maximus
ENSAMXG00000033372	rnpc3	99	67.054	ENSSDUG00000006600	rnpc3	99	67.054	Seriola_dumerili
ENSAMXG00000033372	rnpc3	99	66.860	ENSSLDG00000007979	rnpc3	99	67.054	Seriola_lalandi_dorsalis
ENSAMXG00000033372	rnpc3	95	56.122	ENSSPUG00000008539	-	92	54.694	Sphenodon_punctatus
ENSAMXG00000033372	rnpc3	97	66.467	ENSSPAG00000005633	rnpc3	99	64.892	Stegastes_partitus
ENSAMXG00000033372	rnpc3	96	57.143	ENSSSCG00000037254	RNPC3	94	56.735	Sus_scrofa
ENSAMXG00000033372	rnpc3	89	55.973	ENSTGUG00000004795	-	99	55.973	Taeniopygia_guttata
ENSAMXG00000033372	rnpc3	99	63.708	ENSTNIG00000018963	rnpc3	99	63.708	Tetraodon_nigroviridis
ENSAMXG00000033372	rnpc3	96	57.551	ENSUMAG00000007775	RNPC3	96	57.551	Ursus_maritimus
ENSAMXG00000033372	rnpc3	96	57.551	ENSVVUG00000000331	RNPC3	94	57.551	Vulpes_vulpes
ENSAMXG00000033372	rnpc3	97	44.922	ENSXETG00000025027	rnpc3	97	43.301	Xenopus_tropicalis
ENSAMXG00000033372	rnpc3	53	67.870	ENSXCOG00000005013	rnpc3	99	62.405	Xiphophorus_couchianus
ENSAMXG00000033372	rnpc3	99	61.404	ENSXMAG00000006495	rnpc3	99	61.404	Xiphophorus_maculatus