EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000033394 (Gene tree)
Gene ID: 103037504
Gene Symbol: rcl1
Alias: zgc:109921
Full Name: RNA terminal phosphate cyclase like 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 26593 bases
Position: chrAPWO02000113.1:4328815-4355407
Accession: 103037504
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000028077	RTC	PF01137.21	2.6e-56	1	1
ENSAMXP00000028077	RTC_insert	PF05189.13	6e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000051567	-	4129	XM_007229655	ENSAMXP00000028077	370 (aa)	XP_007229717	UPI000BBDACA2

Gene Model

Click here to download ENSAMXG00000033394's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000033394's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000033394	rcl1	99	78.533	ENSG00000120158	RCL1	96	84.733	Homo_sapiens
ENSAMXG00000033394	rcl1	99	84.783	ENSAPOG00000015666	rcl1	99	84.783	Acanthochromis_polyacanthus
ENSAMXG00000033394	rcl1	99	79.891	ENSAMEG00000002631	RCL1	98	79.891	Ailuropoda_melanoleuca
ENSAMXG00000033394	rcl1	99	81.793	ENSACIG00000021195	rcl1	99	81.793	Amphilophus_citrinellus
ENSAMXG00000033394	rcl1	99	83.967	ENSAOCG00000002223	rcl1	99	83.967	Amphiprion_ocellaris
ENSAMXG00000033394	rcl1	99	84.239	ENSAPEG00000006905	rcl1	99	84.239	Amphiprion_percula
ENSAMXG00000033394	rcl1	99	79.620	ENSATEG00000020026	rcl1	99	79.620	Anabas_testudineus
ENSAMXG00000033394	rcl1	89	77.812	ENSAPLG00000006031	RCL1	100	77.812	Anas_platyrhynchos
ENSAMXG00000033394	rcl1	99	74.457	ENSACAG00000003640	RCL1	98	74.457	Anolis_carolinensis
ENSAMXG00000033394	rcl1	99	78.261	ENSANAG00000037372	RCL1	98	78.261	Aotus_nancymaae
ENSAMXG00000033394	rcl1	99	80.978	ENSACLG00000021724	rcl1	99	80.978	Astatotilapia_calliptera
ENSAMXG00000033394	rcl1	99	45.845	WBGene00022852	ZK1127.5	98	45.845	Caenorhabditis_elegans
ENSAMXG00000033394	rcl1	99	78.804	ENSCJAG00000011202	RCL1	98	78.804	Callithrix_jacchus
ENSAMXG00000033394	rcl1	99	79.891	ENSCAFG00000002091	RCL1	98	79.891	Canis_familiaris
ENSAMXG00000033394	rcl1	99	79.891	ENSCAFG00020000638	RCL1	77	79.891	Canis_lupus_dingo
ENSAMXG00000033394	rcl1	99	78.533	ENSCHIG00000012407	RCL1	98	78.533	Capra_hircus
ENSAMXG00000033394	rcl1	89	79.268	ENSTSYG00000009592	RCL1	97	80.769	Carlito_syrichta
ENSAMXG00000033394	rcl1	70	65.537	ENSCAPG00000013575	RCL1	100	65.537	Cavia_aperea
ENSAMXG00000033394	rcl1	99	78.533	ENSCPOG00000015354	RCL1	98	78.533	Cavia_porcellus
ENSAMXG00000033394	rcl1	99	78.533	ENSCCAG00000033505	RCL1	97	80.328	Cebus_capucinus
ENSAMXG00000033394	rcl1	99	78.533	ENSCATG00000034721	RCL1	97	80.220	Cercocebus_atys
ENSAMXG00000033394	rcl1	99	78.261	ENSCLAG00000007445	RCL1	98	78.261	Chinchilla_lanigera
ENSAMXG00000033394	rcl1	99	78.533	ENSCSAG00000008811	RCL1	98	78.533	Chlorocebus_sabaeus
ENSAMXG00000033394	rcl1	86	69.401	ENSCHOG00000007216	RCL1	98	69.401	Choloepus_hoffmanni
ENSAMXG00000033394	rcl1	99	77.989	ENSCPBG00000025481	RCL1	94	78.485	Chrysemys_picta_bellii
ENSAMXG00000033394	rcl1	100	58.177	ENSCING00000019565	-	99	58.177	Ciona_intestinalis
ENSAMXG00000033394	rcl1	99	78.533	ENSCANG00000027099	RCL1	98	78.533	Colobus_angolensis_palliatus
ENSAMXG00000033394	rcl1	99	78.261	ENSCGRG00001013748	Rcl1	98	78.261	Cricetulus_griseus_chok1gshd
ENSAMXG00000033394	rcl1	89	78.723	ENSCGRG00000005843	Rcl1	99	78.723	Cricetulus_griseus_crigri
ENSAMXG00000033394	rcl1	99	83.967	ENSCSEG00000000712	rcl1	97	83.967	Cynoglossus_semilaevis
ENSAMXG00000033394	rcl1	99	83.696	ENSCVAG00000011536	rcl1	99	83.696	Cyprinodon_variegatus
ENSAMXG00000033394	rcl1	99	83.924	ENSDARG00000038312	rcl1	100	83.924	Danio_rerio
ENSAMXG00000033394	rcl1	72	79.323	ENSDNOG00000019911	RCL1	100	81.019	Dasypus_novemcinctus
ENSAMXG00000033394	rcl1	99	78.804	ENSDORG00000015645	Rcl1	98	78.804	Dipodomys_ordii
ENSAMXG00000033394	rcl1	99	53.867	FBgn0020909	Rtc1	97	54.933	Drosophila_melanogaster
ENSAMXG00000033394	rcl1	89	55.183	ENSETEG00000014087	-	82	91.304	Echinops_telfairi
ENSAMXG00000033394	rcl1	99	54.620	ENSEBUG00000016621	-	98	54.620	Eptatretus_burgeri
ENSAMXG00000033394	rcl1	99	78.804	ENSEASG00005010653	RCL1	98	78.804	Equus_asinus_asinus
ENSAMXG00000033394	rcl1	99	78.804	ENSECAG00000015973	RCL1	98	78.804	Equus_caballus
ENSAMXG00000033394	rcl1	99	67.663	ENSEEUG00000009801	RCL1	98	67.663	Erinaceus_europaeus
ENSAMXG00000033394	rcl1	99	79.891	ENSELUG00000007353	rcl1	99	79.891	Esox_lucius
ENSAMXG00000033394	rcl1	99	78.804	ENSFCAG00000014557	RCL1	98	78.804	Felis_catus
ENSAMXG00000033394	rcl1	99	71.196	ENSFALG00000010553	RCL1	97	71.196	Ficedula_albicollis
ENSAMXG00000033394	rcl1	89	77.744	ENSFDAG00000004209	RCL1	100	77.744	Fukomys_damarensis
ENSAMXG00000033394	rcl1	99	81.793	ENSFHEG00000011228	rcl1	99	81.793	Fundulus_heteroclitus
ENSAMXG00000033394	rcl1	99	81.793	ENSGMOG00000004677	rcl1	99	81.793	Gadus_morhua
ENSAMXG00000033394	rcl1	99	76.087	ENSGALG00000015024	RCL1	98	76.087	Gallus_gallus
ENSAMXG00000033394	rcl1	99	83.696	ENSGAFG00000007257	rcl1	99	83.696	Gambusia_affinis
ENSAMXG00000033394	rcl1	99	81.250	ENSGACG00000017474	rcl1	99	81.250	Gasterosteus_aculeatus
ENSAMXG00000033394	rcl1	99	77.717	ENSGAGG00000003689	RCL1	98	77.717	Gopherus_agassizii
ENSAMXG00000033394	rcl1	99	77.989	ENSGGOG00000015041	RCL1	97	79.670	Gorilla_gorilla
ENSAMXG00000033394	rcl1	99	81.522	ENSHBUG00000001393	rcl1	99	81.522	Haplochromis_burtoni
ENSAMXG00000033394	rcl1	99	77.717	ENSHGLG00000016452	RCL1	98	77.717	Heterocephalus_glaber_female
ENSAMXG00000033394	rcl1	99	65.761	ENSHGLG00000005368	-	98	65.761	Heterocephalus_glaber_female
ENSAMXG00000033394	rcl1	99	66.304	ENSHGLG00100018010	-	98	66.304	Heterocephalus_glaber_male
ENSAMXG00000033394	rcl1	99	72.554	ENSHGLG00100008718	-	98	72.554	Heterocephalus_glaber_male
ENSAMXG00000033394	rcl1	99	80.978	ENSHCOG00000020170	rcl1	99	80.978	Hippocampus_comes
ENSAMXG00000033394	rcl1	100	88.108	ENSIPUG00000018054	RCL1	100	88.108	Ictalurus_punctatus
ENSAMXG00000033394	rcl1	99	78.533	ENSSTOG00000000023	RCL1	98	78.533	Ictidomys_tridecemlineatus
ENSAMXG00000033394	rcl1	99	69.837	ENSJJAG00000015632	-	98	69.837	Jaculus_jaculus
ENSAMXG00000033394	rcl1	55	61.386	ENSJJAG00000000764	-	98	61.386	Jaculus_jaculus
ENSAMXG00000033394	rcl1	99	78.804	ENSJJAG00000022803	-	98	78.804	Jaculus_jaculus
ENSAMXG00000033394	rcl1	99	81.030	ENSKMAG00000011946	rcl1	99	81.030	Kryptolebias_marmoratus
ENSAMXG00000033394	rcl1	99	78.804	ENSLBEG00000003957	rcl1	99	78.804	Labrus_bergylta
ENSAMXG00000033394	rcl1	92	73.314	ENSLACG00000004594	RCL1	99	77.743	Latimeria_chalumnae
ENSAMXG00000033394	rcl1	99	82.880	ENSLOCG00000010148	rcl1	97	82.880	Lepisosteus_oculatus
ENSAMXG00000033394	rcl1	99	76.630	ENSLAFG00000017495	RCL1	98	76.630	Loxodonta_africana
ENSAMXG00000033394	rcl1	99	78.533	ENSMFAG00000037906	RCL1	98	78.533	Macaca_fascicularis
ENSAMXG00000033394	rcl1	99	78.533	ENSMNEG00000012288	RCL1	97	80.220	Macaca_nemestrina
ENSAMXG00000033394	rcl1	99	78.533	ENSMLEG00000043088	RCL1	98	78.533	Mandrillus_leucophaeus
ENSAMXG00000033394	rcl1	99	82.609	ENSMAMG00000008311	rcl1	99	82.609	Mastacembelus_armatus
ENSAMXG00000033394	rcl1	99	80.978	ENSMZEG00005017292	rcl1	99	80.978	Maylandia_zebra
ENSAMXG00000033394	rcl1	58	75.000	ENSMGAG00000002245	RCL1	100	75.000	Meleagris_gallopavo
ENSAMXG00000033394	rcl1	58	80.093	ENSMAUG00000008922	Rcl1	100	80.093	Mesocricetus_auratus
ENSAMXG00000033394	rcl1	99	78.533	ENSMICG00000015562	RCL1	98	78.533	Microcebus_murinus
ENSAMXG00000033394	rcl1	99	78.533	ENSMOCG00000012145	Rcl1	98	78.533	Microtus_ochrogaster
ENSAMXG00000033394	rcl1	99	79.133	ENSMMOG00000021264	rcl1	99	79.133	Mola_mola
ENSAMXG00000033394	rcl1	95	77.143	ENSMODG00000015377	RCL1	93	77.143	Monodelphis_domestica
ENSAMXG00000033394	rcl1	99	81.250	ENSMALG00000018618	rcl1	99	81.250	Monopterus_albus
ENSAMXG00000033394	rcl1	99	78.533	MGP_CAROLIEiJ_G0022853	Rcl1	98	78.533	Mus_caroli
ENSAMXG00000033394	rcl1	99	78.533	ENSMUSG00000024785	Rcl1	98	78.533	Mus_musculus
ENSAMXG00000033394	rcl1	99	79.076	MGP_PahariEiJ_G0014346	Rcl1	100	80.702	Mus_pahari
ENSAMXG00000033394	rcl1	99	78.533	MGP_SPRETEiJ_G0023771	Rcl1	100	80.117	Mus_spretus
ENSAMXG00000033394	rcl1	99	79.076	ENSMPUG00000004998	RCL1	98	79.076	Mustela_putorius_furo
ENSAMXG00000033394	rcl1	99	78.261	ENSMLUG00000009654	RCL1	98	78.261	Myotis_lucifugus
ENSAMXG00000033394	rcl1	99	78.804	ENSNGAG00000015327	Rcl1	98	78.804	Nannospalax_galili
ENSAMXG00000033394	rcl1	91	79.525	ENSNBRG00000019854	rcl1	99	75.691	Neolamprologus_brichardi
ENSAMXG00000033394	rcl1	99	75.543	ENSNLEG00000008891	RCL1	98	75.543	Nomascus_leucogenys
ENSAMXG00000033394	rcl1	99	70.924	ENSMEUG00000007653	RCL1	98	70.924	Notamacropus_eugenii
ENSAMXG00000033394	rcl1	99	78.261	ENSOPRG00000010965	RCL1	98	78.261	Ochotona_princeps
ENSAMXG00000033394	rcl1	89	66.467	ENSODEG00000004151	RCL1	96	66.467	Octodon_degus
ENSAMXG00000033394	rcl1	99	81.522	ENSONIG00000003871	rcl1	99	81.522	Oreochromis_niloticus
ENSAMXG00000033394	rcl1	66	75.502	ENSOANG00000013193	-	98	75.502	Ornithorhynchus_anatinus
ENSAMXG00000033394	rcl1	99	77.989	ENSOCUG00000008161	RCL1	98	77.989	Oryctolagus_cuniculus
ENSAMXG00000033394	rcl1	99	79.891	ENSORLG00000010443	rcl1	99	79.891	Oryzias_latipes
ENSAMXG00000033394	rcl1	99	80.163	ENSORLG00020012211	rcl1	99	80.163	Oryzias_latipes_hni
ENSAMXG00000033394	rcl1	99	79.891	ENSORLG00015001122	rcl1	99	79.891	Oryzias_latipes_hsok
ENSAMXG00000033394	rcl1	99	81.250	ENSOMEG00000022976	rcl1	87	81.250	Oryzias_melastigma
ENSAMXG00000033394	rcl1	99	77.989	ENSOGAG00000007480	RCL1	98	77.989	Otolemur_garnettii
ENSAMXG00000033394	rcl1	99	78.533	ENSOARG00000013463	RCL1	98	78.533	Ovis_aries
ENSAMXG00000033394	rcl1	99	78.804	ENSPPAG00000037958	RCL1	98	78.804	Pan_paniscus
ENSAMXG00000033394	rcl1	99	77.989	ENSPPRG00000022645	RCL1	98	77.989	Panthera_pardus
ENSAMXG00000033394	rcl1	88	79.205	ENSPTIG00000019031	RCL1	100	80.093	Panthera_tigris_altaica
ENSAMXG00000033394	rcl1	99	78.533	ENSPTRG00000020743	RCL1	97	80.220	Pan_troglodytes
ENSAMXG00000033394	rcl1	99	78.533	ENSPANG00000025151	RCL1	98	78.533	Papio_anubis
ENSAMXG00000033394	rcl1	99	80.978	ENSPKIG00000021022	rcl1	99	80.978	Paramormyrops_kingsleyae
ENSAMXG00000033394	rcl1	89	77.812	ENSPSIG00000012302	RCL1	100	77.812	Pelodiscus_sinensis
ENSAMXG00000033394	rcl1	99	83.152	ENSPMGG00000024007	rcl1	99	83.152	Periophthalmus_magnuspinnatus
ENSAMXG00000033394	rcl1	99	78.804	ENSPEMG00000023275	Rcl1	98	78.804	Peromyscus_maniculatus_bairdii
ENSAMXG00000033394	rcl1	99	77.174	ENSPCIG00000000188	RCL1	98	77.174	Phascolarctos_cinereus
ENSAMXG00000033394	rcl1	99	82.609	ENSPFOG00000019682	rcl1	98	82.609	Poecilia_formosa
ENSAMXG00000033394	rcl1	99	82.880	ENSPLAG00000022354	rcl1	99	82.880	Poecilia_latipinna
ENSAMXG00000033394	rcl1	99	82.609	ENSPMEG00000008131	rcl1	99	82.609	Poecilia_mexicana
ENSAMXG00000033394	rcl1	99	82.337	ENSPREG00000008032	rcl1	99	82.337	Poecilia_reticulata
ENSAMXG00000033394	rcl1	99	78.261	ENSPPYG00000019244	RCL1	98	78.261	Pongo_abelii
ENSAMXG00000033394	rcl1	99	71.196	ENSPCAG00000001440	RCL1	98	71.196	Procavia_capensis
ENSAMXG00000033394	rcl1	99	78.804	ENSPCOG00000009611	RCL1	97	80.769	Propithecus_coquereli
ENSAMXG00000033394	rcl1	99	78.533	ENSPVAG00000015752	RCL1	98	78.533	Pteropus_vampyrus
ENSAMXG00000033394	rcl1	99	80.978	ENSPNYG00000012910	rcl1	99	80.978	Pundamilia_nyererei
ENSAMXG00000033394	rcl1	100	90.270	ENSPNAG00000028307	rcl1	91	90.270	Pygocentrus_nattereri
ENSAMXG00000033394	rcl1	99	77.717	ENSRNOG00000015491	Rcl1	98	77.717	Rattus_norvegicus
ENSAMXG00000033394	rcl1	99	78.261	ENSRBIG00000035818	RCL1	98	78.261	Rhinopithecus_bieti
ENSAMXG00000033394	rcl1	99	78.533	ENSRROG00000029781	RCL1	97	80.220	Rhinopithecus_roxellana
ENSAMXG00000033394	rcl1	99	37.534	YOL010W	-	97	37.534	Saccharomyces_cerevisiae
ENSAMXG00000033394	rcl1	99	78.533	ENSSBOG00000026369	RCL1	97	80.328	Saimiri_boliviensis_boliviensis
ENSAMXG00000033394	rcl1	89	77.644	ENSSHAG00000014086	RCL1	100	77.644	Sarcophilus_harrisii
ENSAMXG00000033394	rcl1	99	80.435	ENSSFOG00015023020	rcl1	99	80.435	Scleropages_formosus
ENSAMXG00000033394	rcl1	99	83.152	ENSSMAG00000019751	rcl1	85	83.152	Scophthalmus_maximus
ENSAMXG00000033394	rcl1	99	82.065	ENSSDUG00000006349	rcl1	99	82.065	Seriola_dumerili
ENSAMXG00000033394	rcl1	99	82.337	ENSSLDG00000022076	rcl1	99	82.337	Seriola_lalandi_dorsalis
ENSAMXG00000033394	rcl1	99	78.533	ENSSARG00000009260	RCL1	98	78.533	Sorex_araneus
ENSAMXG00000033394	rcl1	99	77.717	ENSSPUG00000016330	RCL1	98	77.717	Sphenodon_punctatus
ENSAMXG00000033394	rcl1	99	83.152	ENSSPAG00000018038	rcl1	99	83.152	Stegastes_partitus
ENSAMXG00000033394	rcl1	99	78.533	ENSSSCG00000005217	RCL1	82	78.533	Sus_scrofa
ENSAMXG00000033394	rcl1	99	76.216	ENSTGUG00000005138	RCL1	98	76.216	Taeniopygia_guttata
ENSAMXG00000033394	rcl1	99	79.891	ENSTRUG00000010493	rcl1	99	79.891	Takifugu_rubripes
ENSAMXG00000033394	rcl1	99	78.533	ENSTNIG00000013214	rcl1	98	78.533	Tetraodon_nigroviridis
ENSAMXG00000033394	rcl1	99	73.370	ENSTBEG00000016339	RCL1	98	73.370	Tupaia_belangeri
ENSAMXG00000033394	rcl1	99	78.261	ENSTTRG00000016525	RCL1	98	78.261	Tursiops_truncatus
ENSAMXG00000033394	rcl1	99	79.891	ENSUAMG00000005598	RCL1	98	81.761	Ursus_americanus
ENSAMXG00000033394	rcl1	89	79.878	ENSUMAG00000017890	RCL1	97	79.878	Ursus_maritimus
ENSAMXG00000033394	rcl1	89	79.878	ENSVPAG00000009188	RCL1	100	79.878	Vicugna_pacos
ENSAMXG00000033394	rcl1	89	80.851	ENSVVUG00000007304	RCL1	89	80.851	Vulpes_vulpes
ENSAMXG00000033394	rcl1	99	68.564	ENSXETG00000000592	rcl1	98	68.564	Xenopus_tropicalis
ENSAMXG00000033394	rcl1	99	83.152	ENSXCOG00000004922	rcl1	99	83.152	Xiphophorus_couchianus
ENSAMXG00000033394	rcl1	99	83.152	ENSXMAG00000022366	RCL1	99	83.152	Xiphophorus_maculatus