EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000033980 (Gene tree)
Gene ID: 103037120
Gene Symbol: -
Alias: -
Full Name: probable ATP-dependent RNA helicase ddx6
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 4063 bases
Position: chrAPWO02000060.1:112554-116616
Accession: 103037120
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000035097	DEAD	PF00270.29	2.6e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000045184	-	2291	XM_007258279	ENSAMXP00000035097	493 (aa)	XP_007258341	W5KQI9

Gene Model

Click here to download ENSAMXG00000033980's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000033980's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000033980	-	80	36.090	ENSAMXG00000018631	DDX39A	93	36.090
ENSAMXG00000033980	-	80	30.047	ENSAMXG00000002956	DDX41	68	30.047
ENSAMXG00000033980	-	76	30.233	ENSAMXG00000024377	ddx52	62	30.233
ENSAMXG00000033980	-	70	31.421	ENSAMXG00000010288	ddx4	55	31.421
ENSAMXG00000033980	-	69	31.909	ENSAMXG00000004466	ddx5	56	31.909
ENSAMXG00000033980	-	55	32.374	ENSAMXG00000042015	-	87	32.374
ENSAMXG00000033980	-	96	86.105	ENSAMXG00000032542	ddx61	98	85.685
ENSAMXG00000033980	-	72	30.685	ENSAMXG00000015550	DDX5	68	30.201
ENSAMXG00000033980	-	71	31.564	ENSAMXG00000016919	ddx49	75	31.564
ENSAMXG00000033980	-	72	31.129	ENSAMXG00000042612	-	80	31.129
ENSAMXG00000033980	-	72	34.492	ENSAMXG00000015325	zgc:193690	81	34.492
ENSAMXG00000033980	-	75	38.978	ENSAMXG00000019126	eif4a2	90	38.978
ENSAMXG00000033980	-	73	30.352	ENSAMXG00000000911	ddx27	50	30.352
ENSAMXG00000033980	-	76	37.037	ENSAMXG00000020882	eif4a3	94	37.027
ENSAMXG00000033980	-	76	36.579	ENSAMXG00000017837	ddx39b	87	36.579
ENSAMXG00000033980	-	75	30.425	ENSAMXG00000017597	ddx23	51	30.445
ENSAMXG00000033980	-	71	36.438	ENSAMXG00000043100	ddx19	73	36.438
ENSAMXG00000033980	-	68	31.988	ENSAMXG00000004457	ddx43	51	31.098
ENSAMXG00000033980	-	80	35.013	ENSAMXG00000015256	-	89	35.263
ENSAMXG00000033980	-	66	45.098	ENSAMXG00000002100	ddx1	52	45.098
ENSAMXG00000033980	-	75	38.710	ENSAMXG00000030251	eif4a1a	91	38.710
ENSAMXG00000033980	-	78	31.552	ENSAMXG00000010727	ddx47	83	31.552
ENSAMXG00000033980	-	74	30.928	ENSAMXG00000013396	ddx3xb	63	30.928
ENSAMXG00000033980	-	73	30.513	ENSAMXG00000032415	ddx3xa	55	30.348
ENSAMXG00000033980	-	75	36.658	ENSAMXG00000040730	eif4a1b	90	36.658
ENSAMXG00000033980	-	95	81.002	ENSAMXG00000019553	ddx6	98	81.420

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000033980	-	97	83.784	ENSAPOG00000014829	ddx61	98	83.784	Acanthochromis_polyacanthus
ENSAMXG00000033980	-	76	92.021	ENSAPOG00000023627	-	95	92.021	Acanthochromis_polyacanthus
ENSAMXG00000033980	-	98	81.443	ENSACIG00000018355	-	99	81.443	Amphilophus_citrinellus
ENSAMXG00000033980	-	97	85.000	ENSAOCG00000007627	ddx61	98	85.000	Amphiprion_ocellaris
ENSAMXG00000033980	-	100	87.424	ENSAOCG00000006269	-	99	87.424	Amphiprion_ocellaris
ENSAMXG00000033980	-	97	85.000	ENSAPEG00000007293	ddx61	98	85.000	Amphiprion_percula
ENSAMXG00000033980	-	100	87.424	ENSAPEG00000020642	-	99	87.424	Amphiprion_percula
ENSAMXG00000033980	-	100	87.424	ENSAPEG00000021368	-	99	87.424	Amphiprion_percula
ENSAMXG00000033980	-	100	86.437	ENSATEG00000005424	-	99	86.437	Anabas_testudineus
ENSAMXG00000033980	-	97	85.185	ENSATEG00000011302	ddx61	99	85.185	Anabas_testudineus
ENSAMXG00000033980	-	95	86.200	ENSACLG00000027620	ddx61	98	86.200	Astatotilapia_calliptera
ENSAMXG00000033980	-	98	88.454	ENSACLG00000003260	-	99	88.454	Astatotilapia_calliptera
ENSAMXG00000033980	-	100	88.057	ENSCSEG00000009893	-	99	88.057	Cynoglossus_semilaevis
ENSAMXG00000033980	-	99	87.780	ENSCVAG00000011006	-	99	87.780	Cyprinodon_variegatus
ENSAMXG00000033980	-	99	85.010	ENSDARG00000018425	ddx61	99	85.010	Danio_rerio
ENSAMXG00000033980	-	98	86.680	ENSELUG00000020545	ddx61	99	86.680	Esox_lucius
ENSAMXG00000033980	-	98	89.485	ENSELUG00000022538	-	98	89.485	Esox_lucius
ENSAMXG00000033980	-	100	88.462	ENSFHEG00000015487	-	99	88.462	Fundulus_heteroclitus
ENSAMXG00000033980	-	66	84.451	ENSGMOG00000003561	-	100	84.451	Gadus_morhua
ENSAMXG00000033980	-	96	86.345	ENSGMOG00000013762	ddx61	99	85.447	Gadus_morhua
ENSAMXG00000033980	-	98	89.072	ENSGAFG00000015865	-	98	89.072	Gambusia_affinis
ENSAMXG00000033980	-	98	83.030	ENSGACG00000003401	ddx61	100	83.030	Gasterosteus_aculeatus
ENSAMXG00000033980	-	98	87.243	ENSGACG00000002413	-	99	87.243	Gasterosteus_aculeatus
ENSAMXG00000033980	-	95	86.412	ENSHBUG00000017832	ddx61	98	86.412	Haplochromis_burtoni
ENSAMXG00000033980	-	98	88.454	ENSHBUG00000017033	-	99	88.454	Haplochromis_burtoni
ENSAMXG00000033980	-	99	85.801	ENSHCOG00000012238	-	99	85.801	Hippocampus_comes
ENSAMXG00000033980	-	97	80.738	ENSHCOG00000008184	ddx61	99	80.738	Hippocampus_comes
ENSAMXG00000033980	-	95	84.255	ENSIPUG00000012823	DDX6	100	82.245	Ictalurus_punctatus
ENSAMXG00000033980	-	96	90.275	ENSIPUG00000008367	-	99	89.419	Ictalurus_punctatus
ENSAMXG00000033980	-	98	88.660	ENSKMAG00000007213	-	99	88.660	Kryptolebias_marmoratus
ENSAMXG00000033980	-	97	84.583	ENSLBEG00000001740	ddx61	99	84.583	Labrus_bergylta
ENSAMXG00000033980	-	100	86.028	ENSLBEG00000016890	-	99	86.028	Labrus_bergylta
ENSAMXG00000033980	-	97	83.539	ENSLACG00000015214	ddx61	100	83.539	Latimeria_chalumnae
ENSAMXG00000033980	-	99	48.073	ENSLOCG00000004352	ddx61	99	48.479	Lepisosteus_oculatus
ENSAMXG00000033980	-	100	87.500	ENSMAMG00000005559	-	99	87.500	Mastacembelus_armatus
ENSAMXG00000033980	-	97	85.000	ENSMAMG00000005321	ddx61	97	85.000	Mastacembelus_armatus
ENSAMXG00000033980	-	95	86.412	ENSMZEG00005003556	ddx61	98	86.412	Maylandia_zebra
ENSAMXG00000033980	-	98	88.454	ENSMZEG00005026268	-	99	88.454	Maylandia_zebra
ENSAMXG00000033980	-	97	84.728	ENSMMOG00000007415	ddx61	98	84.728	Mola_mola
ENSAMXG00000033980	-	72	75.071	ENSMMOG00000008825	-	92	75.071	Mola_mola
ENSAMXG00000033980	-	100	77.823	ENSMMOG00000013694	-	99	77.823	Mola_mola
ENSAMXG00000033980	-	98	88.430	ENSMALG00000013817	-	98	88.430	Monopterus_albus
ENSAMXG00000033980	-	98	72.597	ENSMALG00000013776	ddx61	98	72.597	Monopterus_albus
ENSAMXG00000033980	-	95	78.981	ENSNBRG00000015800	ddx61	97	78.981	Neolamprologus_brichardi
ENSAMXG00000033980	-	98	81.443	ENSNBRG00000015075	-	99	81.443	Neolamprologus_brichardi
ENSAMXG00000033980	-	98	88.660	ENSONIG00000013748	-	99	88.660	Oreochromis_niloticus
ENSAMXG00000033980	-	98	84.504	ENSONIG00000011418	ddx61	99	84.504	Oreochromis_niloticus
ENSAMXG00000033980	-	97	88.750	ENSORLG00000009178	-	98	88.750	Oryzias_latipes
ENSAMXG00000033980	-	97	88.150	ENSORLG00020015515	-	98	88.150	Oryzias_latipes_hni
ENSAMXG00000033980	-	98	87.269	ENSORLG00015006764	-	99	87.269	Oryzias_latipes_hsok
ENSAMXG00000033980	-	95	80.932	ENSOMEG00000022326	-	98	80.932	Oryzias_melastigma
ENSAMXG00000033980	-	96	89.286	ENSPKIG00000024264	ddx61	98	88.958	Paramormyrops_kingsleyae
ENSAMXG00000033980	-	98	80.538	ENSPMGG00000013355	-	99	80.538	Periophthalmus_magnuspinnatus
ENSAMXG00000033980	-	98	89.441	ENSPFOG00000005750	-	98	89.441	Poecilia_formosa
ENSAMXG00000033980	-	98	89.441	ENSPLAG00000000403	-	98	89.441	Poecilia_latipinna
ENSAMXG00000033980	-	97	89.770	ENSPMEG00000023737	-	98	89.770	Poecilia_mexicana
ENSAMXG00000033980	-	95	80.118	ENSPNYG00000015045	ddx61	98	80.118	Pundamilia_nyererei
ENSAMXG00000033980	-	98	88.454	ENSPNYG00000003986	-	99	88.454	Pundamilia_nyererei
ENSAMXG00000033980	-	100	94.118	ENSPNAG00000008742	-	100	94.118	Pygocentrus_nattereri
ENSAMXG00000033980	-	98	85.477	ENSPNAG00000024072	ddx61	99	85.477	Pygocentrus_nattereri
ENSAMXG00000033980	-	96	89.030	ENSSFOG00015021404	ddx61	98	87.835	Scleropages_formosus
ENSAMXG00000033980	-	95	84.926	ENSSMAG00000006591	ddx61	97	83.891	Scophthalmus_maximus
ENSAMXG00000033980	-	99	87.398	ENSSMAG00000001793	-	99	87.398	Scophthalmus_maximus
ENSAMXG00000033980	-	100	87.273	ENSSDUG00000007530	-	99	87.273	Seriola_dumerili
ENSAMXG00000033980	-	95	86.200	ENSSDUG00000009713	ddx61	99	84.016	Seriola_dumerili
ENSAMXG00000033980	-	95	85.987	ENSSLDG00000000132	ddx61	99	83.811	Seriola_lalandi_dorsalis
ENSAMXG00000033980	-	100	87.273	ENSSLDG00000007608	-	99	87.273	Seriola_lalandi_dorsalis
ENSAMXG00000033980	-	100	88.032	ENSSPAG00000013878	-	99	88.032	Stegastes_partitus
ENSAMXG00000033980	-	95	86.412	ENSSPAG00000001578	ddx61	98	85.000	Stegastes_partitus
ENSAMXG00000033980	-	98	85.950	ENSTRUG00000012432	-	98	85.950	Takifugu_rubripes
ENSAMXG00000033980	-	98	87.010	ENSTNIG00000003560	-	99	87.010	Tetraodon_nigroviridis
ENSAMXG00000033980	-	100	78.296	ENSXCOG00000001406	-	99	78.296	Xiphophorus_couchianus
ENSAMXG00000033980	-	98	89.072	ENSXMAG00000016090	-	98	89.072	Xiphophorus_maculatus