EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000034228 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 4652 bases
Position: chr3:16211297-16215948
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000049339	RVT_1	PF00078.27	5.5e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000034831	-	4652	-	ENSAMXP00000049339	1176 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000034228's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000034228's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000034228	-	94	54.955	ENSAMXG00000035203	-	98	54.955
ENSAMXG00000034228	-	98	43.223	ENSAMXG00000039541	-	99	43.223
ENSAMXG00000034228	-	91	40.938	ENSAMXG00000030324	-	99	40.938

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000034228	-	64	40.501	ENSACLG00000020851	-	100	40.501	Astatotilapia_calliptera
ENSAMXG00000034228	-	93	37.489	ENSMZEG00005018493	-	98	37.489	Maylandia_zebra
ENSAMXG00000034228	-	65	59.711	ENSORLG00015002388	-	96	59.711	Oryzias_latipes_hsok
ENSAMXG00000034228	-	77	56.670	ENSOMEG00000023989	-	99	56.670	Oryzias_melastigma
ENSAMXG00000034228	-	81	66.144	ENSSFOG00015000041	-	99	66.144	Scleropages_formosus
ENSAMXG00000034228	-	77	67.547	ENSSFOG00015018491	-	99	67.547	Scleropages_formosus
ENSAMXG00000034228	-	87	63.540	ENSSFOG00015009840	-	99	63.346	Scleropages_formosus
ENSAMXG00000034228	-	87	43.774	ENSSLDG00000012549	-	98	43.774	Seriola_lalandi_dorsalis
ENSAMXG00000034228	-	93	39.745	ENSTNIG00000000569	-	97	39.836	Tetraodon_nigroviridis