EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000034699 (Gene tree)
Gene ID: 103034265
Gene Symbol: apex1
Alias: hm:zehn1532|wu:fc13d11|zap1|zgc:66204
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 8398 bases
Position: chr7:24518401-24526798
Accession: 103034265
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000052378	Exo_endo_phos	PF03372.23	1.9e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000050246	-	3224	XM_007229738	ENSAMXP00000052378	312 (aa)	XP_007229800	W5LK54

Gene Model

Click here to download ENSAMXG00000034699's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000034699's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000034699	apex1	100	65.625	ENSG00000100823	APEX1	100	65.625	Homo_sapiens
ENSAMXG00000034699	apex1	90	87.143	ENSAPOG00000017002	apex1	99	83.388	Acanthochromis_polyacanthus
ENSAMXG00000034699	apex1	100	64.062	ENSAMEG00000005418	APEX1	100	65.000	Ailuropoda_melanoleuca
ENSAMXG00000034699	apex1	89	88.448	ENSACIG00000010653	apex1	98	88.014	Amphilophus_citrinellus
ENSAMXG00000034699	apex1	99	83.226	ENSAOCG00000009649	apex1	99	83.548	Amphiprion_ocellaris
ENSAMXG00000034699	apex1	99	83.548	ENSAPEG00000021453	apex1	99	83.871	Amphiprion_percula
ENSAMXG00000034699	apex1	99	82.201	ENSATEG00000002883	apex1	97	85.113	Anabas_testudineus
ENSAMXG00000034699	apex1	100	69.085	ENSACAG00000008099	APEX1	100	70.032	Anolis_carolinensis
ENSAMXG00000034699	apex1	80	30.263	ENSACAG00000011201	APEX2	59	30.233	Anolis_carolinensis
ENSAMXG00000034699	apex1	100	65.938	ENSANAG00000030117	APEX1	100	66.250	Aotus_nancymaae
ENSAMXG00000034699	apex1	88	90.909	ENSACLG00000018441	apex1	99	87.419	Astatotilapia_calliptera
ENSAMXG00000034699	apex1	100	64.062	ENSBTAG00000002745	APEX1	100	65.000	Bos_taurus
ENSAMXG00000034699	apex1	90	43.509	WBGene00001372	exo-3	98	43.509	Caenorhabditis_elegans
ENSAMXG00000034699	apex1	100	65.938	ENSCJAG00000009726	APEX1	100	65.938	Callithrix_jacchus
ENSAMXG00000034699	apex1	100	65.625	ENSCAFG00000032033	APEX1	100	65.625	Canis_familiaris
ENSAMXG00000034699	apex1	100	65.625	ENSCAFG00020014377	-	100	65.625	Canis_lupus_dingo
ENSAMXG00000034699	apex1	54	59.195	ENSCAFG00020023002	-	96	59.195	Canis_lupus_dingo
ENSAMXG00000034699	apex1	88	54.909	ENSCHIG00000014537	-	98	52.303	Capra_hircus
ENSAMXG00000034699	apex1	100	64.062	ENSCHIG00000007298	-	100	65.000	Capra_hircus
ENSAMXG00000034699	apex1	100	64.062	ENSTSYG00000034813	APEX1	100	64.062	Carlito_syrichta
ENSAMXG00000034699	apex1	86	63.636	ENSCAPG00000016235	APEX1	91	70.339	Cavia_aperea
ENSAMXG00000034699	apex1	100	65.625	ENSCPOG00000030909	APEX1	100	65.625	Cavia_porcellus
ENSAMXG00000034699	apex1	100	57.188	ENSCCAG00000031931	-	100	57.188	Cebus_capucinus
ENSAMXG00000034699	apex1	100	65.938	ENSCCAG00000033056	-	100	65.938	Cebus_capucinus
ENSAMXG00000034699	apex1	100	65.312	ENSCATG00000015580	APEX1	100	65.312	Cercocebus_atys
ENSAMXG00000034699	apex1	100	65.625	ENSCLAG00000001002	APEX1	100	65.625	Chinchilla_lanigera
ENSAMXG00000034699	apex1	100	65.625	ENSCSAG00000016670	-	100	65.625	Chlorocebus_sabaeus
ENSAMXG00000034699	apex1	100	65.625	ENSCSAG00000016685	-	100	65.625	Chlorocebus_sabaeus
ENSAMXG00000034699	apex1	100	71.562	ENSCPBG00000009567	APEX1	100	71.562	Chrysemys_picta_bellii
ENSAMXG00000034699	apex1	97	56.250	ENSCING00000008137	-	94	56.250	Ciona_intestinalis
ENSAMXG00000034699	apex1	86	51.866	ENSCSAVG00000007144	-	100	53.101	Ciona_savignyi
ENSAMXG00000034699	apex1	100	65.312	ENSCANG00000030726	APEX1	100	65.312	Colobus_angolensis_palliatus
ENSAMXG00000034699	apex1	98	65.079	ENSCGRG00001017046	Apex1	99	65.079	Cricetulus_griseus_chok1gshd
ENSAMXG00000034699	apex1	98	65.079	ENSCGRG00000008984	Apex1	99	65.079	Cricetulus_griseus_crigri
ENSAMXG00000034699	apex1	99	84.194	ENSCSEG00000017499	apex1	99	84.194	Cynoglossus_semilaevis
ENSAMXG00000034699	apex1	99	86.129	ENSCVAG00000022075	apex1	99	86.129	Cyprinodon_variegatus
ENSAMXG00000034699	apex1	100	87.179	ENSDARG00000045843	apex1	100	88.782	Danio_rerio
ENSAMXG00000034699	apex1	100	61.562	ENSDNOG00000042234	APEX1	95	62.813	Dasypus_novemcinctus
ENSAMXG00000034699	apex1	100	64.688	ENSDORG00000001616	Apex1	100	64.688	Dipodomys_ordii
ENSAMXG00000034699	apex1	100	65.312	ENSETEG00000004855	-	100	66.250	Echinops_telfairi
ENSAMXG00000034699	apex1	76	58.824	ENSEBUG00000000622	-	92	58.824	Eptatretus_burgeri
ENSAMXG00000034699	apex1	100	65.312	ENSEASG00005017489	APEX1	74	65.312	Equus_asinus_asinus
ENSAMXG00000034699	apex1	100	65.312	ENSECAG00000022325	APEX1	82	65.312	Equus_caballus
ENSAMXG00000034699	apex1	86	69.517	ENSEEUG00000012569	APEX1	97	68.214	Erinaceus_europaeus
ENSAMXG00000034699	apex1	100	87.821	ENSELUG00000021706	apex1	100	87.821	Esox_lucius
ENSAMXG00000034699	apex1	100	66.250	ENSFCAG00000030869	APEX1	100	66.250	Felis_catus
ENSAMXG00000034699	apex1	100	65.938	ENSFDAG00000006120	APEX1	100	65.938	Fukomys_damarensis
ENSAMXG00000034699	apex1	99	85.161	ENSFHEG00000009031	apex1	83	85.484	Fundulus_heteroclitus
ENSAMXG00000034699	apex1	99	78.065	ENSGMOG00000007943	apex1	98	78.065	Gadus_morhua
ENSAMXG00000034699	apex1	99	85.161	ENSGAFG00000005311	apex1	99	85.484	Gambusia_affinis
ENSAMXG00000034699	apex1	99	84.839	ENSGACG00000019497	apex1	99	87.594	Gasterosteus_aculeatus
ENSAMXG00000034699	apex1	100	70.938	ENSGAGG00000014999	APEX1	100	71.875	Gopherus_agassizii
ENSAMXG00000034699	apex1	100	65.312	ENSGGOG00000002128	APEX1	100	65.312	Gorilla_gorilla
ENSAMXG00000034699	apex1	99	86.452	ENSHBUG00000005894	apex1	99	87.419	Haplochromis_burtoni
ENSAMXG00000034699	apex1	100	65.625	ENSHGLG00000002848	APEX1	100	65.625	Heterocephalus_glaber_female
ENSAMXG00000034699	apex1	100	65.625	ENSHGLG00100017878	APEX1	100	65.625	Heterocephalus_glaber_male
ENSAMXG00000034699	apex1	99	83.871	ENSHCOG00000009961	apex1	99	83.871	Hippocampus_comes
ENSAMXG00000034699	apex1	100	91.346	ENSIPUG00000005799	apex1	100	91.346	Ictalurus_punctatus
ENSAMXG00000034699	apex1	100	65.938	ENSSTOG00000010096	APEX1	100	66.875	Ictidomys_tridecemlineatus
ENSAMXG00000034699	apex1	89	60.573	ENSJJAG00000020465	-	94	58.703	Jaculus_jaculus
ENSAMXG00000034699	apex1	100	64.375	ENSJJAG00000012067	-	100	64.375	Jaculus_jaculus
ENSAMXG00000034699	apex1	100	56.173	ENSJJAG00000003660	-	100	57.500	Jaculus_jaculus
ENSAMXG00000034699	apex1	99	84.839	ENSKMAG00000021171	apex1	99	84.839	Kryptolebias_marmoratus
ENSAMXG00000034699	apex1	99	84.516	ENSLBEG00000010248	apex1	99	84.839	Labrus_bergylta
ENSAMXG00000034699	apex1	100	72.293	ENSLACG00000008617	APEX1	100	72.293	Latimeria_chalumnae
ENSAMXG00000034699	apex1	100	80.952	ENSLOCG00000015516	apex1	99	80.952	Lepisosteus_oculatus
ENSAMXG00000034699	apex1	89	70.251	ENSLAFG00000021872	APEX1	100	65.094	Loxodonta_africana
ENSAMXG00000034699	apex1	100	65.312	ENSMFAG00000002565	APEX1	100	65.312	Macaca_fascicularis
ENSAMXG00000034699	apex1	100	65.312	ENSMMUG00000048039	APEX1	100	65.312	Macaca_mulatta
ENSAMXG00000034699	apex1	100	65.312	ENSMNEG00000036944	APEX1	100	65.312	Macaca_nemestrina
ENSAMXG00000034699	apex1	100	65.312	ENSMLEG00000042125	APEX1	100	65.312	Mandrillus_leucophaeus
ENSAMXG00000034699	apex1	99	85.806	ENSMAMG00000023526	apex1	99	86.129	Mastacembelus_armatus
ENSAMXG00000034699	apex1	88	90.909	ENSMZEG00005014187	apex1	99	87.419	Maylandia_zebra
ENSAMXG00000034699	apex1	100	64.890	ENSMAUG00000013994	Apex1	100	64.890	Mesocricetus_auratus
ENSAMXG00000034699	apex1	100	65.625	ENSMICG00000043554	APEX1	100	65.625	Microcebus_murinus
ENSAMXG00000034699	apex1	98	65.397	ENSMOCG00000013721	Apex1	99	65.397	Microtus_ochrogaster
ENSAMXG00000034699	apex1	99	85.209	ENSMMOG00000010031	apex1	97	85.209	Mola_mola
ENSAMXG00000034699	apex1	90	68.198	ENSMODG00000007125	APEX1	100	64.688	Monodelphis_domestica
ENSAMXG00000034699	apex1	90	82.143	ENSMALG00000011699	apex1	78	81.315	Monopterus_albus
ENSAMXG00000034699	apex1	99	66.458	MGP_CAROLIEiJ_G0019209	Apex1	99	66.458	Mus_caroli
ENSAMXG00000034699	apex1	100	66.562	ENSMUSG00000035960	Apex1	100	66.562	Mus_musculus
ENSAMXG00000034699	apex1	100	66.250	MGP_PahariEiJ_G0030232	Apex1	100	66.562	Mus_pahari
ENSAMXG00000034699	apex1	100	66.562	MGP_SPRETEiJ_G0020101	Apex1	100	66.562	Mus_spretus
ENSAMXG00000034699	apex1	100	64.596	ENSMLUG00000028957	APEX1	100	64.596	Myotis_lucifugus
ENSAMXG00000034699	apex1	88	53.381	ENSNGAG00000021748	-	86	53.381	Nannospalax_galili
ENSAMXG00000034699	apex1	100	65.938	ENSNGAG00000002725	-	100	65.938	Nannospalax_galili
ENSAMXG00000034699	apex1	88	90.909	ENSNBRG00000005334	apex1	91	87.419	Neolamprologus_brichardi
ENSAMXG00000034699	apex1	100	65.312	ENSNLEG00000010839	APEX1	100	65.625	Nomascus_leucogenys
ENSAMXG00000034699	apex1	100	65.397	ENSMEUG00000014519	APEX1	100	65.397	Notamacropus_eugenii
ENSAMXG00000034699	apex1	100	65.517	ENSOPRG00000014029	APEX1	100	65.517	Ochotona_princeps
ENSAMXG00000034699	apex1	100	65.625	ENSODEG00000001703	-	100	65.625	Octodon_degus
ENSAMXG00000034699	apex1	94	53.061	ENSODEG00000004777	-	96	53.061	Octodon_degus
ENSAMXG00000034699	apex1	93	54.730	ENSODEG00000006583	-	91	54.730	Octodon_degus
ENSAMXG00000034699	apex1	89	90.975	ENSONIG00000012089	apex1	99	87.419	Oreochromis_niloticus
ENSAMXG00000034699	apex1	91	68.421	ENSOANG00000008836	APEX1	80	65.644	Ornithorhynchus_anatinus
ENSAMXG00000034699	apex1	100	66.250	ENSOCUG00000005022	APEX1	100	66.562	Oryctolagus_cuniculus
ENSAMXG00000034699	apex1	99	85.209	ENSORLG00000012378	apex1	99	86.817	Oryzias_latipes
ENSAMXG00000034699	apex1	99	85.209	ENSORLG00020021371	apex1	99	86.817	Oryzias_latipes_hni
ENSAMXG00000034699	apex1	99	85.209	ENSORLG00015020089	apex1	99	86.817	Oryzias_latipes_hsok
ENSAMXG00000034699	apex1	99	87.138	ENSOMEG00000018876	apex1	99	87.460	Oryzias_melastigma
ENSAMXG00000034699	apex1	100	65.938	ENSOGAG00000013335	-	100	65.938	Otolemur_garnettii
ENSAMXG00000034699	apex1	97	58.065	ENSOGAG00000029355	-	99	59.355	Otolemur_garnettii
ENSAMXG00000034699	apex1	97	60.968	ENSOARG00000001876	-	100	61.935	Ovis_aries
ENSAMXG00000034699	apex1	100	64.062	ENSOARG00000019740	-	100	65.000	Ovis_aries
ENSAMXG00000034699	apex1	97	54.723	ENSOARG00000014424	-	98	54.723	Ovis_aries
ENSAMXG00000034699	apex1	100	65.625	ENSPPAG00000038760	APEX1	100	65.625	Pan_paniscus
ENSAMXG00000034699	apex1	100	65.625	ENSPPRG00000011794	APEX1	100	65.625	Panthera_pardus
ENSAMXG00000034699	apex1	100	66.250	ENSPTIG00000014829	APEX1	100	66.250	Panthera_tigris_altaica
ENSAMXG00000034699	apex1	100	65.625	ENSPTRG00000006093	APEX1	100	65.625	Pan_troglodytes
ENSAMXG00000034699	apex1	100	65.312	ENSPANG00000022757	APEX1	100	65.312	Papio_anubis
ENSAMXG00000034699	apex1	88	87.681	ENSPKIG00000003504	apex1	100	85.032	Paramormyrops_kingsleyae
ENSAMXG00000034699	apex1	86	76.580	ENSPMGG00000016596	apex1	79	76.580	Periophthalmus_magnuspinnatus
ENSAMXG00000034699	apex1	98	65.079	ENSPEMG00000019097	Apex1	99	65.079	Peromyscus_maniculatus_bairdii
ENSAMXG00000034699	apex1	93	71.769	ENSPMAG00000007275	-	99	71.769	Petromyzon_marinus
ENSAMXG00000034699	apex1	89	67.742	ENSPCIG00000023274	APEX1	100	63.636	Phascolarctos_cinereus
ENSAMXG00000034699	apex1	99	84.839	ENSPFOG00000004178	apex1	99	85.161	Poecilia_formosa
ENSAMXG00000034699	apex1	99	85.484	ENSPLAG00000012779	apex1	99	85.806	Poecilia_latipinna
ENSAMXG00000034699	apex1	99	84.839	ENSPMEG00000019623	apex1	99	85.161	Poecilia_mexicana
ENSAMXG00000034699	apex1	99	84.194	ENSPREG00000014298	apex1	99	84.516	Poecilia_reticulata
ENSAMXG00000034699	apex1	100	65.000	ENSPPYG00000005565	APEX1	100	65.312	Pongo_abelii
ENSAMXG00000034699	apex1	100	64.375	ENSPCAG00000010376	APEX1	100	64.375	Procavia_capensis
ENSAMXG00000034699	apex1	100	65.938	ENSPCOG00000021564	APEX1	100	65.938	Propithecus_coquereli
ENSAMXG00000034699	apex1	100	65.217	ENSPVAG00000010736	APEX1	100	65.217	Pteropus_vampyrus
ENSAMXG00000034699	apex1	88	91.273	ENSPNYG00000023940	apex1	99	87.742	Pundamilia_nyererei
ENSAMXG00000034699	apex1	96	90.333	ENSPNAG00000020897	apex1	96	93.056	Pygocentrus_nattereri
ENSAMXG00000034699	apex1	98	65.714	ENSRNOG00000009663	Apex1	99	65.714	Rattus_norvegicus
ENSAMXG00000034699	apex1	100	65.625	ENSRBIG00000038325	APEX1	99	65.625	Rhinopithecus_bieti
ENSAMXG00000034699	apex1	100	65.938	ENSSBOG00000018921	-	100	65.938	Saimiri_boliviensis_boliviensis
ENSAMXG00000034699	apex1	100	57.508	ENSSBOG00000031372	-	100	57.508	Saimiri_boliviensis_boliviensis
ENSAMXG00000034699	apex1	100	62.346	ENSSHAG00000013524	APEX1	100	63.272	Sarcophilus_harrisii
ENSAMXG00000034699	apex1	100	83.654	ENSSFOG00015001948	apex1	100	83.654	Scleropages_formosus
ENSAMXG00000034699	apex1	89	87.726	ENSSMAG00000013348	apex1	99	84.076	Scophthalmus_maximus
ENSAMXG00000034699	apex1	99	87.097	ENSSDUG00000016377	apex1	99	87.097	Seriola_dumerili
ENSAMXG00000034699	apex1	99	87.097	ENSSLDG00000023005	apex1	99	87.097	Seriola_lalandi_dorsalis
ENSAMXG00000034699	apex1	91	73.239	ENSSPUG00000000531	APEX1	96	73.239	Sphenodon_punctatus
ENSAMXG00000034699	apex1	99	83.871	ENSSPAG00000000458	apex1	99	83.871	Stegastes_partitus
ENSAMXG00000034699	apex1	87	41.155	ENSSSCG00000039705	-	89	41.155	Sus_scrofa
ENSAMXG00000034699	apex1	100	64.062	ENSSSCG00000040060	-	100	65.312	Sus_scrofa
ENSAMXG00000034699	apex1	75	57.872	ENSTGUG00000014378	APEX1	100	57.872	Taeniopygia_guttata
ENSAMXG00000034699	apex1	89	88.087	ENSTRUG00000004268	apex1	94	83.871	Takifugu_rubripes
ENSAMXG00000034699	apex1	99	83.226	ENSTNIG00000005778	apex1	99	83.226	Tetraodon_nigroviridis
ENSAMXG00000034699	apex1	100	62.500	ENSTBEG00000006405	APEX1	100	63.438	Tupaia_belangeri
ENSAMXG00000034699	apex1	75	68.085	ENSTTRG00000007860	APEX1	100	68.085	Tursiops_truncatus
ENSAMXG00000034699	apex1	100	64.375	ENSUAMG00000010457	APEX1	100	64.375	Ursus_americanus
ENSAMXG00000034699	apex1	100	64.375	ENSUMAG00000009178	APEX1	100	64.375	Ursus_maritimus
ENSAMXG00000034699	apex1	75	64.681	ENSVPAG00000005083	APEX1	100	64.681	Vicugna_pacos
ENSAMXG00000034699	apex1	100	65.312	ENSVVUG00000009010	APEX1	100	65.625	Vulpes_vulpes
ENSAMXG00000034699	apex1	100	69.716	ENSXETG00000024773	apex1	100	70.347	Xenopus_tropicalis
ENSAMXG00000034699	apex1	99	85.484	ENSXCOG00000015233	apex1	99	85.806	Xiphophorus_couchianus
ENSAMXG00000034699	apex1	99	85.484	ENSXMAG00000006195	apex1	99	85.806	Xiphophorus_maculatus