EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000034811 (Gene tree)
Gene ID: -
Gene Symbol: srsf4
Alias: sfrs4|wu:fb37e02|wu:fj35e06|zgc:152957|zgc:55809
Full Name: serine/arginine-rich splicing factor 4
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 7705 bases
Position: chr23:6786448-6794152
Accession: 103046588
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000037531	RRM_1	PF00076.22	3.3e-31	1	2
ENSAMXP00000037531	RRM_1	PF00076.22	3.3e-31	2	2
ENSAMXP00000039911	RRM_1	PF00076.22	4.9e-31	1	2
ENSAMXP00000039911	RRM_1	PF00076.22	4.9e-31	2	2
ENSAMXP00000029431	RRM_1	PF00076.22	5.8e-22	1	1
ENSAMXP00000039445	RRM_1	PF00076.22	3.5e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000033504	-	309	-	ENSAMXP00000039445	102 (aa)	-	-
ENSAMXT00000057499	-	855	-	ENSAMXP00000039911	284 (aa)	-	-
ENSAMXT00000030866	-	762	XM_007253056	ENSAMXP00000037531	253 (aa)	XP_007253118	-
ENSAMXT00000034574	-	834	-	ENSAMXP00000029431	277 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000034811's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000034811's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000034811	srsf4	73	41.558	ENSAMXG00000033364	srsf3a	84	34.058
ENSAMXG00000034811	srsf4	72	76.712	ENSAMXG00000042692	-	96	66.912
ENSAMXG00000034811	srsf4	84	37.759	ENSAMXG00000032281	srsf9	74	44.565
ENSAMXG00000034811	srsf4	74	43.038	ENSAMXG00000007005	srsf7b	91	31.373
ENSAMXG00000034811	srsf4	73	44.156	ENSAMXG00000008840	srsf3b	61	41.346
ENSAMXG00000034811	srsf4	77	39.381	ENSAMXG00000035996	srsf1a	67	46.784
ENSAMXG00000034811	srsf4	68	68.116	ENSAMXG00000011932	srsf5b	81	62.295
ENSAMXG00000034811	srsf4	98	46.875	ENSAMXG00000030476	srsf5a	95	47.126
ENSAMXG00000034811	srsf4	67	34.211	ENSAMXG00000002894	cirbpa	63	34.951

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000034811	srsf4	100	66.535	ENSG00000116350	SRSF4	76	67.647	Homo_sapiens
ENSAMXG00000034811	srsf4	81	73.494	ENSAPOG00000023399	-	86	58.268	Acanthochromis_polyacanthus
ENSAMXG00000034811	srsf4	75	89.474	ENSACIG00000018649	srsf4	90	86.777	Amphilophus_citrinellus
ENSAMXG00000034811	srsf4	70	91.549	ENSAOCG00000005997	srsf4	92	90.062	Amphiprion_ocellaris
ENSAMXG00000034811	srsf4	70	91.549	ENSAPEG00000020870	-	67	87.209	Amphiprion_percula
ENSAMXG00000034811	srsf4	67	91.176	ENSATEG00000005680	srsf4	71	81.860	Anabas_testudineus
ENSAMXG00000034811	srsf4	75	90.789	ENSACLG00000003395	srsf4	91	71.631	Astatotilapia_calliptera
ENSAMXG00000034811	srsf4	75	76.316	ENSACLG00000021269	-	72	57.576	Astatotilapia_calliptera
ENSAMXG00000034811	srsf4	70	66.197	WBGene00004698	rsp-1	97	53.103	Caenorhabditis_elegans
ENSAMXG00000034811	srsf4	81	80.723	ENSCHIG00000022096	SRSF4	68	63.669	Capra_hircus
ENSAMXG00000034811	srsf4	74	62.667	ENSCING00000024718	-	57	56.410	Ciona_intestinalis
ENSAMXG00000034811	srsf4	75	66.234	ENSCING00000011362	-	65	56.989	Ciona_intestinalis
ENSAMXG00000034811	srsf4	79	64.198	ENSCING00000020631	-	80	59.487	Ciona_intestinalis
ENSAMXG00000034811	srsf4	75	67.949	ENSCING00000012370	-	68	62.121	Ciona_intestinalis
ENSAMXG00000034811	srsf4	80	64.634	ENSCSAVG00000002581	-	70	63.536	Ciona_savignyi
ENSAMXG00000034811	srsf4	75	92.105	ENSCSEG00000010058	srsf4	75	86.066	Cynoglossus_semilaevis
ENSAMXG00000034811	srsf4	98	83.099	ENSDARG00000105293	srsf4	82	86.207	Danio_rerio
ENSAMXG00000034811	srsf4	81	80.723	ENSDORG00000002459	Srsf4	52	70.588	Dipodomys_ordii
ENSAMXG00000034811	srsf4	73	64.865	FBgn0004587	B52	95	58.462	Drosophila_melanogaster
ENSAMXG00000034811	srsf4	61	60.625	ENSEBUG00000003129	srsf4	69	60.625	Eptatretus_burgeri
ENSAMXG00000034811	srsf4	81	63.529	ENSEBUG00000001681	srsf4	67	59.218	Eptatretus_burgeri
ENSAMXG00000034811	srsf4	77	57.653	ENSEBUG00000005588	srsf4	67	50.787	Eptatretus_burgeri
ENSAMXG00000034811	srsf4	99	59.932	ENSELUG00000017551	srsf4	93	72.308	Esox_lucius
ENSAMXG00000034811	srsf4	81	80.723	ENSFCAG00000027821	SRSF4	61	62.752	Felis_catus
ENSAMXG00000034811	srsf4	100	79.710	ENSFALG00000001346	SRSF4	55	64.751	Ficedula_albicollis
ENSAMXG00000034811	srsf4	81	89.157	ENSFHEG00000007472	srsf4	98	82.418	Fundulus_heteroclitus
ENSAMXG00000034811	srsf4	76	89.744	ENSGMOG00000012906	srsf4	57	88.827	Gadus_morhua
ENSAMXG00000034811	srsf4	87	88.235	ENSGAFG00000018496	srsf4	98	62.687	Gambusia_affinis
ENSAMXG00000034811	srsf4	76	92.308	ENSGACG00000002389	srsf4	56	89.944	Gasterosteus_aculeatus
ENSAMXG00000034811	srsf4	81	80.723	ENSGGOG00000002444	SRSF4	60	59.060	Gorilla_gorilla
ENSAMXG00000034811	srsf4	75	90.789	ENSHBUG00000016897	-	83	82.418	Haplochromis_burtoni
ENSAMXG00000034811	srsf4	75	76.316	ENSHBUG00000011326	-	68	62.097	Haplochromis_burtoni
ENSAMXG00000034811	srsf4	96	85.294	ENSHCOG00000012540	srsf4	72	85.507	Hippocampus_comes
ENSAMXG00000034811	srsf4	81	89.157	ENSKMAG00000013631	srsf4	82	77.885	Kryptolebias_marmoratus
ENSAMXG00000034811	srsf4	72	91.781	ENSLBEG00000017163	-	76	89.024	Labrus_bergylta
ENSAMXG00000034811	srsf4	72	76.712	ENSLOCG00000001442	-	66	65.164	Lepisosteus_oculatus
ENSAMXG00000034811	srsf4	99	71.146	ENSMMUG00000007110	SRSF4	54	77.941	Macaca_mulatta
ENSAMXG00000034811	srsf4	91	83.871	ENSMAMG00000004888	srsf4	69	91.573	Mastacembelus_armatus
ENSAMXG00000034811	srsf4	75	90.789	ENSMZEG00005025078	-	82	82.418	Maylandia_zebra
ENSAMXG00000034811	srsf4	75	90.789	ENSMZEG00005026275	srsf4	91	71.631	Maylandia_zebra
ENSAMXG00000034811	srsf4	81	79.518	ENSMGAG00000002400	SRSF4	55	64.751	Meleagris_gallopavo
ENSAMXG00000034811	srsf4	97	70.000	ENSMMOG00000013653	srsf4	98	71.538	Mola_mola
ENSAMXG00000034811	srsf4	81	80.723	ENSMODG00000011052	SRSF4	63	78.431	Monodelphis_domestica
ENSAMXG00000034811	srsf4	98	72.400	ENSMALG00000013392	srsf4	82	79.545	Monopterus_albus
ENSAMXG00000034811	srsf4	96	61.224	ENSMALG00000010062	-	94	66.292	Monopterus_albus
ENSAMXG00000034811	srsf4	75	90.789	ENSNBRG00000014840	-	85	82.418	Neolamprologus_brichardi
ENSAMXG00000034811	srsf4	92	56.897	ENSNLEG00000030787	-	95	45.149	Nomascus_leucogenys
ENSAMXG00000034811	srsf4	69	91.429	ENSONIG00000013730	srsf4	52	85.854	Oreochromis_niloticus
ENSAMXG00000034811	srsf4	70	91.549	ENSORLG00000028783	-	75	89.024	Oryzias_latipes
ENSAMXG00000034811	srsf4	70	91.549	ENSORLG00020016052	srsf4	96	75.581	Oryzias_latipes_hni
ENSAMXG00000034811	srsf4	98	71.223	ENSORLG00015007566	srsf4	71	90.503	Oryzias_latipes_hsok
ENSAMXG00000034811	srsf4	70	91.549	ENSOMEG00000005541	srsf4	51	90.503	Oryzias_melastigma
ENSAMXG00000034811	srsf4	90	66.316	ENSOARG00000017944	-	55	39.901	Ovis_aries
ENSAMXG00000034811	srsf4	55	83.688	ENSOARG00000002451	SRSF4	55	77.381	Ovis_aries
ENSAMXG00000034811	srsf4	81	80.723	ENSPPAG00000028357	SRSF4	60	59.060	Pan_paniscus
ENSAMXG00000034811	srsf4	81	80.723	ENSPPRG00000016248	SRSF4	61	62.752	Panthera_pardus
ENSAMXG00000034811	srsf4	81	80.723	ENSPTRG00000000445	SRSF4	60	59.060	Pan_troglodytes
ENSAMXG00000034811	srsf4	75	90.789	ENSPMGG00000013436	srsf4	95	83.465	Periophthalmus_magnuspinnatus
ENSAMXG00000034811	srsf4	75	68.421	ENSPMAG00000009397	srsf4	68	64.286	Petromyzon_marinus
ENSAMXG00000034811	srsf4	81	89.157	ENSPFOG00000001306	srsf4	78	68.641	Poecilia_formosa
ENSAMXG00000034811	srsf4	98	88.235	ENSPLAG00000008812	srsf4	96	63.670	Poecilia_latipinna
ENSAMXG00000034811	srsf4	98	88.235	ENSPMEG00000023638	srsf4	68	86.957	Poecilia_mexicana
ENSAMXG00000034811	srsf4	81	89.157	ENSPREG00000009639	srsf4	69	86.957	Poecilia_reticulata
ENSAMXG00000034811	srsf4	69	91.429	ENSPNYG00000003796	srsf4	56	88.462	Pundamilia_nyererei
ENSAMXG00000034811	srsf4	96	88.235	ENSPNAG00000023844	srsf4	91	69.697	Pygocentrus_nattereri
ENSAMXG00000034811	srsf4	57	82.877	ENSSHAG00000012407	SRSF4	60	76.879	Sarcophilus_harrisii
ENSAMXG00000034811	srsf4	81	87.952	ENSSFOG00015020292	srsf4	82	87.611	Scleropages_formosus
ENSAMXG00000034811	srsf4	70	91.549	ENSSMAG00000001707	srsf4	50	88.587	Scophthalmus_maximus
ENSAMXG00000034811	srsf4	70	91.549	ENSSDUG00000007387	srsf4	54	92.135	Seriola_dumerili
ENSAMXG00000034811	srsf4	70	77.095	ENSSLDG00000009745	srsf4	98	61.624	Seriola_lalandi_dorsalis
ENSAMXG00000034811	srsf4	75	78.947	ENSSPUG00000019124	-	97	68.085	Sphenodon_punctatus
ENSAMXG00000034811	srsf4	76	92.308	ENSSPAG00000014538	srsf4	83	89.167	Stegastes_partitus
ENSAMXG00000034811	srsf4	96	70.943	ENSTRUG00000011891	srsf4	63	83.420	Takifugu_rubripes
ENSAMXG00000034811	srsf4	94	81.250	ENSTNIG00000005573	srsf4	53	84.951	Tetraodon_nigroviridis
ENSAMXG00000034811	srsf4	100	86.765	ENSTNIG00000000115	-	50	85.507	Tetraodon_nigroviridis
ENSAMXG00000034811	srsf4	75	75.000	ENSXCOG00000003212	-	73	57.258	Xiphophorus_couchianus
ENSAMXG00000034811	srsf4	81	89.157	ENSXCOG00000018826	srsf4	89	85.593	Xiphophorus_couchianus
ENSAMXG00000034811	srsf4	81	89.157	ENSXMAG00000021549	-	70	89.157	Xiphophorus_maculatus