EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000034915 (Gene tree)
Gene ID: 103038689
Gene Symbol: zgc:55733
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 16773 bases
Position: chr21:20690922-20707694
Accession: 103038689
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000032403	RRM_1	PF00076.22	3.6e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000052265	-	2782	XM_022682108	ENSAMXP00000032403	274 (aa)	XP_022537829	-

Gene Model

Click here to download ENSAMXG00000034915's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000034915's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000034915	zgc:55733	70	78.238	ENSAMXG00000042946	hnrnpc	97	76.316
ENSAMXG00000034915	zgc:55733	92	49.627	ENSAMXG00000032617	-	85	48.425
ENSAMXG00000034915	zgc:55733	92	47.751	ENSAMXG00000019031	-	82	51.852

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000034915	zgc:55733	96	50.545	ENSG00000184672	RALYL	99	73.810	Homo_sapiens
ENSAMXG00000034915	zgc:55733	86	80.242	ENSAPOG00000006963	hnrnpc	85	80.695	Acanthochromis_polyacanthus
ENSAMXG00000034915	zgc:55733	87	77.953	ENSACIG00000000270	-	83	87.963	Amphilophus_citrinellus
ENSAMXG00000034915	zgc:55733	87	75.984	ENSACIG00000016568	-	91	77.733	Amphilophus_citrinellus
ENSAMXG00000034915	zgc:55733	86	76.800	ENSAOCG00000021616	-	82	79.167	Amphiprion_ocellaris
ENSAMXG00000034915	zgc:55733	86	79.839	ENSAOCG00000003896	-	85	80.309	Amphiprion_ocellaris
ENSAMXG00000034915	zgc:55733	86	77.200	ENSAPEG00000019962	-	85	79.167	Amphiprion_percula
ENSAMXG00000034915	zgc:55733	86	79.839	ENSAPEG00000001489	-	85	80.309	Amphiprion_percula
ENSAMXG00000034915	zgc:55733	91	77.068	ENSATEG00000018006	-	89	79.424	Anabas_testudineus
ENSAMXG00000034915	zgc:55733	87	77.381	ENSATEG00000011734	-	85	76.984	Anabas_testudineus
ENSAMXG00000034915	zgc:55733	79	51.899	ENSAPLG00000015574	RALYL	80	53.165	Anas_platyrhynchos
ENSAMXG00000034915	zgc:55733	96	47.203	ENSACAG00000028464	RALYL	79	52.321	Anolis_carolinensis
ENSAMXG00000034915	zgc:55733	96	49.818	ENSANAG00000023383	RALYL	78	56.444	Aotus_nancymaae
ENSAMXG00000034915	zgc:55733	91	75.564	ENSACLG00000005707	-	89	78.571	Astatotilapia_calliptera
ENSAMXG00000034915	zgc:55733	86	77.108	ENSACLG00000013636	-	87	79.231	Astatotilapia_calliptera
ENSAMXG00000034915	zgc:55733	86	77.510	ENSACLG00000000995	-	85	79.615	Astatotilapia_calliptera
ENSAMXG00000034915	zgc:55733	96	50.182	ENSCJAG00000000402	RALYL	78	54.113	Callithrix_jacchus
ENSAMXG00000034915	zgc:55733	96	47.535	ENSCPOG00000012314	RALYL	79	52.282	Cavia_porcellus
ENSAMXG00000034915	zgc:55733	96	50.182	ENSCCAG00000025003	RALYL	82	73.810	Cebus_capucinus
ENSAMXG00000034915	zgc:55733	96	50.545	ENSCATG00000042145	RALYL	86	51.362	Cercocebus_atys
ENSAMXG00000034915	zgc:55733	79	52.119	ENSCLAG00000005228	RALYL	79	52.282	Chinchilla_lanigera
ENSAMXG00000034915	zgc:55733	77	51.739	ENSCHOG00000013228	RALYL	77	49.793	Choloepus_hoffmanni
ENSAMXG00000034915	zgc:55733	96	50.545	ENSCANG00000039144	RALYL	86	51.362	Colobus_angolensis_palliatus
ENSAMXG00000034915	zgc:55733	79	52.321	ENSCGRG00001009241	Ralyl	79	52.282	Cricetulus_griseus_chok1gshd
ENSAMXG00000034915	zgc:55733	90	71.765	ENSCSEG00000021349	-	81	75.000	Cynoglossus_semilaevis
ENSAMXG00000034915	zgc:55733	77	76.389	ENSCSEG00000019769	-	74	78.241	Cynoglossus_semilaevis
ENSAMXG00000034915	zgc:55733	92	62.593	ENSCVAG00000002797	-	82	63.786	Cyprinodon_variegatus
ENSAMXG00000034915	zgc:55733	86	76.494	ENSCVAG00000016981	-	83	76.103	Cyprinodon_variegatus
ENSAMXG00000034915	zgc:55733	86	75.918	ENSDARG00000053810	hnrnpc	82	75.969	Danio_rerio
ENSAMXG00000034915	zgc:55733	91	89.960	ENSDARG00000103845	zgc:55733	94	90.283	Danio_rerio
ENSAMXG00000034915	zgc:55733	96	47.917	ENSDORG00000003721	Ralyl	82	51.613	Dipodomys_ordii
ENSAMXG00000034915	zgc:55733	61	57.222	ENSETEG00000014028	RALYL	85	59.880	Echinops_telfairi
ENSAMXG00000034915	zgc:55733	89	44.231	ENSEBUG00000012363	hnrnpc	67	48.899	Eptatretus_burgeri
ENSAMXG00000034915	zgc:55733	76	49.065	ENSEBUG00000006049	RALYL	75	48.598	Eptatretus_burgeri
ENSAMXG00000034915	zgc:55733	96	47.569	ENSEEUG00000007202	RALYL	83	51.417	Erinaceus_europaeus
ENSAMXG00000034915	zgc:55733	88	76.336	ENSELUG00000007714	-	90	76.718	Esox_lucius
ENSAMXG00000034915	zgc:55733	91	77.985	ENSELUG00000004132	-	91	79.478	Esox_lucius
ENSAMXG00000034915	zgc:55733	96	46.479	ENSFALG00000008647	RALYL	99	56.621	Ficedula_albicollis
ENSAMXG00000034915	zgc:55733	91	75.094	ENSFHEG00000003605	-	86	76.154	Fundulus_heteroclitus
ENSAMXG00000034915	zgc:55733	90	69.065	ENSFHEG00000007278	-	84	70.652	Fundulus_heteroclitus
ENSAMXG00000034915	zgc:55733	79	54.425	ENSGALG00000036938	RALYL	79	53.165	Gallus_gallus
ENSAMXG00000034915	zgc:55733	91	73.962	ENSGAFG00000020486	-	81	83.333	Gambusia_affinis
ENSAMXG00000034915	zgc:55733	89	74.615	ENSGAFG00000020992	-	78	84.722	Gambusia_affinis
ENSAMXG00000034915	zgc:55733	78	72.350	ENSGACG00000018932	-	88	69.585	Gasterosteus_aculeatus
ENSAMXG00000034915	zgc:55733	91	74.231	ENSGACG00000017772	-	93	77.593	Gasterosteus_aculeatus
ENSAMXG00000034915	zgc:55733	96	50.545	ENSGGOG00000000841	RALYL	86	51.362	Gorilla_gorilla
ENSAMXG00000034915	zgc:55733	86	77.912	ENSHBUG00000018342	-	85	80.000	Haplochromis_burtoni
ENSAMXG00000034915	zgc:55733	91	75.188	ENSHBUG00000010527	-	83	78.195	Haplochromis_burtoni
ENSAMXG00000034915	zgc:55733	79	51.695	ENSHGLG00000004866	RALYL	79	51.867	Heterocephalus_glaber_female
ENSAMXG00000034915	zgc:55733	79	51.695	ENSHGLG00100017480	RALYL	79	51.867	Heterocephalus_glaber_male
ENSAMXG00000034915	zgc:55733	88	72.901	ENSHCOG00000012333	hnrnpc	92	72.085	Hippocampus_comes
ENSAMXG00000034915	zgc:55733	91	91.566	ENSIPUG00000008666	zgc:55733	94	92.958	Ictalurus_punctatus
ENSAMXG00000034915	zgc:55733	88	77.200	ENSIPUG00000011271	hnrnpc	98	81.333	Ictalurus_punctatus
ENSAMXG00000034915	zgc:55733	82	51.230	ENSSTOG00000012583	RALYL	83	51.210	Ictidomys_tridecemlineatus
ENSAMXG00000034915	zgc:55733	92	76.316	ENSKMAG00000011170	-	84	78.125	Kryptolebias_marmoratus
ENSAMXG00000034915	zgc:55733	86	76.494	ENSKMAG00000018265	-	83	78.491	Kryptolebias_marmoratus
ENSAMXG00000034915	zgc:55733	93	72.302	ENSLBEG00000024418	-	86	72.973	Labrus_bergylta
ENSAMXG00000034915	zgc:55733	91	76.806	ENSLBEG00000006979	-	85	77.642	Labrus_bergylta
ENSAMXG00000034915	zgc:55733	90	76.806	ENSLBEG00000006193	-	83	78.788	Labrus_bergylta
ENSAMXG00000034915	zgc:55733	89	67.424	ENSLOCG00000002560	hnrnpc	91	70.229	Lepisosteus_oculatus
ENSAMXG00000034915	zgc:55733	96	50.545	ENSMNEG00000033288	RALYL	86	51.362	Macaca_nemestrina
ENSAMXG00000034915	zgc:55733	96	50.545	ENSMLEG00000038284	RALYL	86	51.362	Mandrillus_leucophaeus
ENSAMXG00000034915	zgc:55733	91	75.940	ENSMAMG00000008033	-	89	78.947	Mastacembelus_armatus
ENSAMXG00000034915	zgc:55733	86	81.048	ENSMAMG00000012236	-	84	81.081	Mastacembelus_armatus
ENSAMXG00000034915	zgc:55733	87	77.510	ENSMZEG00005020460	-	88	77.510	Maylandia_zebra
ENSAMXG00000034915	zgc:55733	91	75.564	ENSMZEG00005024249	-	83	78.571	Maylandia_zebra
ENSAMXG00000034915	zgc:55733	79	52.321	ENSMAUG00000015149	Ralyl	79	52.282	Mesocricetus_auratus
ENSAMXG00000034915	zgc:55733	79	54.222	ENSMICG00000005558	RALYL	85	73.810	Microcebus_murinus
ENSAMXG00000034915	zgc:55733	79	52.321	ENSMOCG00000017371	Ralyl	79	52.282	Microtus_ochrogaster
ENSAMXG00000034915	zgc:55733	90	77.011	ENSMMOG00000021465	-	92	78.927	Mola_mola
ENSAMXG00000034915	zgc:55733	85	76.518	ENSMMOG00000019520	-	83	85.981	Mola_mola
ENSAMXG00000034915	zgc:55733	91	77.099	ENSMALG00000014623	-	83	79.389	Monopterus_albus
ENSAMXG00000034915	zgc:55733	87	75.207	ENSMALG00000007520	-	84	75.620	Monopterus_albus
ENSAMXG00000034915	zgc:55733	79	51.899	ENSMUSG00000039717	Ralyl	99	72.619	Mus_musculus
ENSAMXG00000034915	zgc:55733	79	52.743	ENSMPUG00000010724	RALYL	79	51.867	Mustela_putorius_furo
ENSAMXG00000034915	zgc:55733	82	51.230	ENSNGAG00000013375	Ralyl	82	51.210	Nannospalax_galili
ENSAMXG00000034915	zgc:55733	91	75.188	ENSNBRG00000015676	-	77	85.000	Neolamprologus_brichardi
ENSAMXG00000034915	zgc:55733	87	77.953	ENSNBRG00000004912	-	93	80.717	Neolamprologus_brichardi
ENSAMXG00000034915	zgc:55733	96	50.545	ENSNLEG00000002702	RALYL	82	51.362	Nomascus_leucogenys
ENSAMXG00000034915	zgc:55733	63	49.479	ENSOPRG00000013650	-	98	46.734	Ochotona_princeps
ENSAMXG00000034915	zgc:55733	80	52.301	ENSODEG00000001012	RALYL	80	52.049	Octodon_degus
ENSAMXG00000034915	zgc:55733	86	78.715	ENSONIG00000007859	-	93	77.407	Oreochromis_niloticus
ENSAMXG00000034915	zgc:55733	91	75.564	ENSONIG00000018350	-	83	78.571	Oreochromis_niloticus
ENSAMXG00000034915	zgc:55733	86	70.000	ENSORLG00000009999	-	85	69.732	Oryzias_latipes
ENSAMXG00000034915	zgc:55733	86	74.031	ENSORLG00000003144	-	82	76.103	Oryzias_latipes
ENSAMXG00000034915	zgc:55733	86	69.600	ENSORLG00020018228	hnrnpc	85	69.349	Oryzias_latipes_hni
ENSAMXG00000034915	zgc:55733	86	74.031	ENSORLG00015009460	-	82	76.103	Oryzias_latipes_hsok
ENSAMXG00000034915	zgc:55733	86	70.000	ENSORLG00015019755	-	85	69.732	Oryzias_latipes_hsok
ENSAMXG00000034915	zgc:55733	86	71.200	ENSOMEG00000020488	-	85	70.881	Oryzias_melastigma
ENSAMXG00000034915	zgc:55733	86	76.494	ENSOMEG00000022665	-	83	78.491	Oryzias_melastigma
ENSAMXG00000034915	zgc:55733	96	50.545	ENSPPAG00000038705	RALYL	86	51.362	Pan_paniscus
ENSAMXG00000034915	zgc:55733	79	56.388	ENSPPRG00000018612	RALYL	78	55.947	Panthera_pardus
ENSAMXG00000034915	zgc:55733	79	56.388	ENSPTIG00000020331	RALYL	78	55.947	Panthera_tigris_altaica
ENSAMXG00000034915	zgc:55733	96	50.545	ENSPTRG00000020381	RALYL	86	51.362	Pan_troglodytes
ENSAMXG00000034915	zgc:55733	96	50.545	ENSPANG00000029305	RALYL	86	51.362	Papio_anubis
ENSAMXG00000034915	zgc:55733	91	76.296	ENSPKIG00000008592	-	85	79.630	Paramormyrops_kingsleyae
ENSAMXG00000034915	zgc:55733	89	75.000	ENSPKIG00000022837	-	83	76.894	Paramormyrops_kingsleyae
ENSAMXG00000034915	zgc:55733	79	51.477	ENSPSIG00000011135	RALYL	79	52.743	Pelodiscus_sinensis
ENSAMXG00000034915	zgc:55733	73	78.922	ENSPMGG00000017774	-	90	65.566	Periophthalmus_magnuspinnatus
ENSAMXG00000034915	zgc:55733	77	85.981	ENSPMGG00000013144	-	82	84.579	Periophthalmus_magnuspinnatus
ENSAMXG00000034915	zgc:55733	79	52.321	ENSPEMG00000016447	Ralyl	79	52.282	Peromyscus_maniculatus_bairdii
ENSAMXG00000034915	zgc:55733	77	54.310	ENSPMAG00000002407	RALYL	99	54.310	Petromyzon_marinus
ENSAMXG00000034915	zgc:55733	86	75.600	ENSPFOG00000002643	-	84	77.239	Poecilia_formosa
ENSAMXG00000034915	zgc:55733	91	74.436	ENSPFOG00000001583	-	85	75.862	Poecilia_formosa
ENSAMXG00000034915	zgc:55733	91	74.340	ENSPLAG00000015305	-	85	74.615	Poecilia_latipinna
ENSAMXG00000034915	zgc:55733	86	75.600	ENSPLAG00000000061	-	84	77.122	Poecilia_latipinna
ENSAMXG00000034915	zgc:55733	91	74.717	ENSPMEG00000004802	-	85	76.154	Poecilia_mexicana
ENSAMXG00000034915	zgc:55733	86	75.200	ENSPMEG00000016524	-	84	74.908	Poecilia_mexicana
ENSAMXG00000034915	zgc:55733	86	74.000	ENSPREG00000007928	-	81	76.613	Poecilia_reticulata
ENSAMXG00000034915	zgc:55733	86	74.800	ENSPREG00000001852	-	91	76.384	Poecilia_reticulata
ENSAMXG00000034915	zgc:55733	96	42.751	ENSPPYG00000018710	-	83	43.033	Pongo_abelii
ENSAMXG00000034915	zgc:55733	79	51.271	ENSPVAG00000010821	RALYL	87	49.237	Pteropus_vampyrus
ENSAMXG00000034915	zgc:55733	87	76.772	ENSPNYG00000020293	-	87	79.921	Pundamilia_nyererei
ENSAMXG00000034915	zgc:55733	91	75.188	ENSPNYG00000003747	-	89	78.195	Pundamilia_nyererei
ENSAMXG00000034915	zgc:55733	86	77.869	ENSPNAG00000015686	hnrnpc	89	80.620	Pygocentrus_nattereri
ENSAMXG00000034915	zgc:55733	91	85.714	ENSPNAG00000019200	zgc:55733	86	85.714	Pygocentrus_nattereri
ENSAMXG00000034915	zgc:55733	96	50.545	ENSRROG00000023925	RALYL	87	72.093	Rhinopithecus_roxellana
ENSAMXG00000034915	zgc:55733	87	76.628	ENSSFOG00015012924	-	81	97.500	Scleropages_formosus
ENSAMXG00000034915	zgc:55733	91	72.119	ENSSFOG00015012015	-	82	86.047	Scleropages_formosus
ENSAMXG00000034915	zgc:55733	87	77.291	ENSSMAG00000011147	-	79	85.648	Scophthalmus_maximus
ENSAMXG00000034915	zgc:55733	86	77.551	ENSSMAG00000013592	-	84	76.154	Scophthalmus_maximus
ENSAMXG00000034915	zgc:55733	91	80.534	ENSSDUG00000001723	-	85	80.309	Seriola_dumerili
ENSAMXG00000034915	zgc:55733	91	76.806	ENSSDUG00000006730	-	84	79.468	Seriola_dumerili
ENSAMXG00000034915	zgc:55733	91	80.916	ENSSLDG00000007454	-	85	80.695	Seriola_lalandi_dorsalis
ENSAMXG00000034915	zgc:55733	91	76.806	ENSSLDG00000007474	-	91	79.087	Seriola_lalandi_dorsalis
ENSAMXG00000034915	zgc:55733	91	76.515	ENSSPAG00000013996	-	83	79.545	Stegastes_partitus
ENSAMXG00000034915	zgc:55733	91	80.608	ENSSPAG00000023204	-	85	81.853	Stegastes_partitus
ENSAMXG00000034915	zgc:55733	96	46.127	ENSTGUG00000011689	RALYL	81	53.586	Taeniopygia_guttata
ENSAMXG00000034915	zgc:55733	89	70.588	ENSTRUG00000020158	-	83	75.697	Takifugu_rubripes
ENSAMXG00000034915	zgc:55733	87	72.691	ENSTNIG00000000334	-	94	71.373	Tetraodon_nigroviridis
ENSAMXG00000034915	zgc:55733	87	70.817	ENSTNIG00000007427	-	84	73.541	Tetraodon_nigroviridis
ENSAMXG00000034915	zgc:55733	79	46.383	ENSTBEG00000005551	RALYL	91	46.341	Tupaia_belangeri
ENSAMXG00000034915	zgc:55733	82	48.963	ENSTTRG00000015762	RALYL	81	49.791	Tursiops_truncatus
ENSAMXG00000034915	zgc:55733	79	50.667	ENSVPAG00000008501	RALYL	79	50.870	Vicugna_pacos
ENSAMXG00000034915	zgc:55733	56	86.503	ENSXCOG00000019434	-	95	68.996	Xiphophorus_couchianus
ENSAMXG00000034915	zgc:55733	91	67.925	ENSXCOG00000006552	-	81	69.721	Xiphophorus_couchianus
ENSAMXG00000034915	zgc:55733	86	75.200	ENSXMAG00000022849	-	86	78.030	Xiphophorus_maculatus
ENSAMXG00000034915	zgc:55733	91	73.962	ENSXMAG00000009333	-	85	75.769	Xiphophorus_maculatus