EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000035203 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 4958 bases
Position: chr1:16555187-16560144
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000040292	RVT_1	PF00078.27	2.6e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000055550	-	4958	-	ENSAMXP00000040292	1120 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000035203's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000035203's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000035203	-	89	43.238	ENSAMXG00000030324	-	93	43.238
ENSAMXG00000035203	-	98	54.955	ENSAMXG00000034228	-	94	54.955
ENSAMXG00000035203	-	99	44.464	ENSAMXG00000039541	-	98	44.493

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000035203	-	67	43.289	ENSACLG00000020851	-	100	43.289	Astatotilapia_calliptera
ENSAMXG00000035203	-	98	41.501	ENSMZEG00005018493	-	98	41.501	Maylandia_zebra
ENSAMXG00000035203	-	68	66.230	ENSORLG00015002388	-	96	66.230	Oryzias_latipes_hsok
ENSAMXG00000035203	-	81	61.936	ENSOMEG00000023989	-	99	61.936	Oryzias_melastigma
ENSAMXG00000035203	-	81	55.055	ENSSFOG00015018491	-	99	55.055	Scleropages_formosus
ENSAMXG00000035203	-	83	54.642	ENSSFOG00015000041	-	96	54.642	Scleropages_formosus
ENSAMXG00000035203	-	89	53.247	ENSSFOG00015009840	-	96	53.247	Scleropages_formosus
ENSAMXG00000035203	-	90	45.229	ENSSLDG00000012549	-	96	45.229	Seriola_lalandi_dorsalis
ENSAMXG00000035203	-	98	41.599	ENSTNIG00000000569	-	98	41.689	Tetraodon_nigroviridis