EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSAMXG00000035543 (Gene tree)
Gene ID
-
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Astyanax_mexicanus
Status
putative
Strand
Minus strand
Length
4024 bases
Position
chr4:13307293-13311316
Accession
103037564
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSAMXP00000037976LSMPF01423.222e-0911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSAMXT00000054856-285XM_022669133ENSAMXP0000003797694 (aa)XP_022524854-
Gene Model
Click here to download ENSAMXG00000035543's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000035543's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSAMXG00000035543lsm510081.915ENSG00000106355LSM510081.915Homo_sapiens
ENSAMXG00000035543lsm510082.979ENSAPOG00000020779LSM510082.979Acanthochromis_polyacanthus
ENSAMXG00000035543lsm59080.000ENSAPOG00000011743LSM510080.000Acanthochromis_polyacanthus
ENSAMXG00000035543lsm510081.915ENSAMEG00000006700LSM510081.915Ailuropoda_melanoleuca
ENSAMXG00000035543lsm55690.566ENSACIG00000019185lsm58890.566Amphilophus_citrinellus
ENSAMXG00000035543lsm510082.979ENSAOCG00000001636lsm510082.979Amphiprion_ocellaris
ENSAMXG00000035543lsm510082.979ENSAPEG00000008151lsm510082.979Amphiprion_percula
ENSAMXG00000035543lsm56980.000ENSAPEG00000008201lsm510080.000Amphiprion_percula
ENSAMXG00000035543lsm59081.176ENSATEG00000020470lsm510060.638Anabas_testudineus
ENSAMXG00000035543lsm58281.818ENSAPLG00000008171LSM510081.818Anas_platyrhynchos
ENSAMXG00000035543lsm56372.881ENSACAG00000009530LSM59372.881Anolis_carolinensis
ENSAMXG00000035543lsm510082.979ENSANAG00000034409-10082.979Aotus_nancymaae
ENSAMXG00000035543lsm59979.570ENSANAG00000024192-9479.570Aotus_nancymaae
ENSAMXG00000035543lsm510062.766ENSANAG00000037758-10061.702Aotus_nancymaae
ENSAMXG00000035543lsm59683.333ENSACLG00000012891lsm59983.333Astatotilapia_calliptera
ENSAMXG00000035543lsm510081.915ENSBTAG00000002332LSM510081.915Bos_taurus
ENSAMXG00000035543lsm510061.702WBGene00003079lsm-510061.702Caenorhabditis_elegans
ENSAMXG00000035543lsm510081.915ENSCJAG00000047379LSM55989.474Callithrix_jacchus
ENSAMXG00000035543lsm59973.118ENSCJAG00000005678-10073.118Callithrix_jacchus
ENSAMXG00000035543lsm510080.851ENSCAFG00000019261-10080.851Canis_familiaris
ENSAMXG00000035543lsm510081.915ENSCAFG00020004946LSM510081.915Canis_lupus_dingo
ENSAMXG00000035543lsm510081.915ENSCHIG00000024539LSM510081.915Capra_hircus
ENSAMXG00000035543lsm58263.636ENSCHIG00000021428-9561.538Capra_hircus
ENSAMXG00000035543lsm510079.787ENSCHIG00000004079-10079.787Capra_hircus
ENSAMXG00000035543lsm510070.213ENSTSYG00000028728-10070.213Carlito_syrichta
ENSAMXG00000035543lsm510067.021ENSTSYG00000026530-9167.021Carlito_syrichta
ENSAMXG00000035543lsm510057.447ENSTSYG00000036637-10057.447Carlito_syrichta
ENSAMXG00000035543lsm510081.915ENSTSYG00000006449-10081.915Carlito_syrichta
ENSAMXG00000035543lsm58375.641ENSCAPG00000006980LSM510075.641Cavia_aperea
ENSAMXG00000035543lsm510081.915ENSCPOG00000036386LSM510081.915Cavia_porcellus
ENSAMXG00000035543lsm510053.191ENSCCAG00000037334-10053.191Cebus_capucinus
ENSAMXG00000035543lsm510081.915ENSCCAG00000000821-10081.915Cebus_capucinus
ENSAMXG00000035543lsm510079.787ENSCCAG00000032123-10079.787Cebus_capucinus
ENSAMXG00000035543lsm510064.894ENSCCAG00000032792-10063.830Cebus_capucinus
ENSAMXG00000035543lsm510081.915ENSCCAG00000037808-10081.915Cebus_capucinus
ENSAMXG00000035543lsm510081.915ENSCATG00000040218LSM510081.915Cercocebus_atys
ENSAMXG00000035543lsm59970.968ENSCATG00000014790-10070.968Cercocebus_atys
ENSAMXG00000035543lsm510081.915ENSCLAG00000000202LSM510081.915Chinchilla_lanigera
ENSAMXG00000035543lsm510069.149ENSCLAG00000005062-9069.149Chinchilla_lanigera
ENSAMXG00000035543lsm58379.487ENSCHOG00000005335LSM59979.487Choloepus_hoffmanni
ENSAMXG00000035543lsm510081.915ENSCPBG00000013685LSM510081.915Chrysemys_picta_bellii
ENSAMXG00000035543lsm59574.157ENSCING00000020625-9774.157Ciona_intestinalis
ENSAMXG00000035543lsm59574.157ENSCSAVG00000001439-9874.157Ciona_savignyi
ENSAMXG00000035543lsm510081.915ENSCANG00000039909LSM510081.915Colobus_angolensis_palliatus
ENSAMXG00000035543lsm510081.915ENSCGRG00001015461Lsm510081.915Cricetulus_griseus_chok1gshd
ENSAMXG00000035543lsm58382.051ENSCGRG00000007677Lsm510082.051Cricetulus_griseus_crigri
ENSAMXG00000035543lsm510058.511ENSCSEG00000015286lsm510058.511Cynoglossus_semilaevis
ENSAMXG00000035543lsm510084.043ENSCVAG00000004262lsm510084.043Cyprinodon_variegatus
ENSAMXG00000035543lsm510084.043ENSDARG00000071573lsm510084.043Danio_rerio
ENSAMXG00000035543lsm59673.333ENSDNOG00000049495-9673.333Dasypus_novemcinctus
ENSAMXG00000035543lsm510081.915ENSDNOG00000034958LSM510081.915Dasypus_novemcinctus
ENSAMXG00000035543lsm510081.915ENSDORG00000009422Lsm510081.915Dipodomys_ordii
ENSAMXG00000035543lsm59569.663FBgn0035675CG66109569.663Drosophila_melanogaster
ENSAMXG00000035543lsm59964.516ENSETEG00000001469-9964.516Echinops_telfairi
ENSAMXG00000035543lsm59868.478ENSETEG00000010651-9967.391Echinops_telfairi
ENSAMXG00000035543lsm510081.915ENSETEG00000018068LSM510081.915Echinops_telfairi
ENSAMXG00000035543lsm59856.522ENSETEG00000000777-9954.348Echinops_telfairi
ENSAMXG00000035543lsm58266.234ENSETEG00000016074-9866.234Echinops_telfairi
ENSAMXG00000035543lsm510079.787ENSEBUG00000008540lsm510079.787Eptatretus_burgeri
ENSAMXG00000035543lsm510081.915ENSEASG00005003500LSM510081.915Equus_asinus_asinus
ENSAMXG00000035543lsm510069.149ENSECAG00000018445LSM510068.085Equus_caballus
ENSAMXG00000035543lsm56475.000ENSEEUG00000004102LSM57290.698Erinaceus_europaeus
ENSAMXG00000035543lsm510085.106ENSELUG00000007792lsm510085.106Esox_lucius
ENSAMXG00000035543lsm510081.915ENSFCAG00000000230LSM510081.915Felis_catus
ENSAMXG00000035543lsm58482.278ENSFALG00000001892LSM59282.278Ficedula_albicollis
ENSAMXG00000035543lsm59057.647ENSFDAG00000008685-9756.471Fukomys_damarensis
ENSAMXG00000035543lsm510081.915ENSFDAG00000008767LSM510081.915Fukomys_damarensis
ENSAMXG00000035543lsm510066.316ENSFHEG00000004011lsm510065.263Fundulus_heteroclitus
ENSAMXG00000035543lsm59983.871ENSGMOG00000018235lsm510083.871Gadus_morhua
ENSAMXG00000035543lsm510081.915ENSGALG00000041625LSM510081.915Gallus_gallus
ENSAMXG00000035543lsm56980.000ENSGAFG00000016824lsm510080.000Gambusia_affinis
ENSAMXG00000035543lsm510082.979ENSGACG00000005528lsm510082.979Gasterosteus_aculeatus
ENSAMXG00000035543lsm510081.915ENSGAGG00000015593LSM510081.915Gopherus_agassizii
ENSAMXG00000035543lsm510081.915ENSGGOG00000043469LSM510081.915Gorilla_gorilla
ENSAMXG00000035543lsm59683.333ENSHBUG00000013773lsm59983.333Haplochromis_burtoni
ENSAMXG00000035543lsm510081.915ENSHGLG00000011765LSM510081.915Heterocephalus_glaber_female
ENSAMXG00000035543lsm510078.723ENSHGLG00100015610LSM510078.723Heterocephalus_glaber_male
ENSAMXG00000035543lsm510058.511ENSHCOG00000008288lsm510058.511Hippocampus_comes
ENSAMXG00000035543lsm510086.170ENSIPUG00000021095LSM510086.170Ictalurus_punctatus
ENSAMXG00000035543lsm59368.539ENSSTOG00000033886-9768.539Ictidomys_tridecemlineatus
ENSAMXG00000035543lsm510081.915ENSSTOG00000012662LSM510081.915Ictidomys_tridecemlineatus
ENSAMXG00000035543lsm510079.787ENSJJAG00000012145-10079.787Jaculus_jaculus
ENSAMXG00000035543lsm58773.171ENSJJAG00000004475-10073.171Jaculus_jaculus
ENSAMXG00000035543lsm510055.319ENSJJAG00000016144-9255.319Jaculus_jaculus
ENSAMXG00000035543lsm510081.915ENSKMAG00000021861lsm510081.915Kryptolebias_marmoratus
ENSAMXG00000035543lsm59081.176ENSLBEG00000009235LSM56581.176Labrus_bergylta
ENSAMXG00000035543lsm510084.043ENSLACG00000022448LSM510084.043Latimeria_chalumnae
ENSAMXG00000035543lsm510084.043ENSLOCG00000012903lsm510084.043Lepisosteus_oculatus
ENSAMXG00000035543lsm510063.830ENSLAFG00000027938-10062.766Loxodonta_africana
ENSAMXG00000035543lsm510081.915ENSLAFG00000029579LSM510081.915Loxodonta_africana
ENSAMXG00000035543lsm510081.915ENSMFAG00000038508LSM510081.915Macaca_fascicularis
ENSAMXG00000035543lsm510079.787ENSMFAG00000030152-10079.787Macaca_fascicularis
ENSAMXG00000035543lsm59972.043ENSMMUG00000039822-10072.043Macaca_mulatta
ENSAMXG00000035543lsm510079.787ENSMMUG00000030131-10079.787Macaca_mulatta
ENSAMXG00000035543lsm510081.915ENSMNEG00000015331LSM510081.915Macaca_nemestrina
ENSAMXG00000035543lsm510079.787ENSMNEG00000037935-10079.787Macaca_nemestrina
ENSAMXG00000035543lsm510081.915ENSMLEG00000024945LSM510081.915Mandrillus_leucophaeus
ENSAMXG00000035543lsm59870.652ENSMLEG00000034037-10070.652Mandrillus_leucophaeus
ENSAMXG00000035543lsm510078.723ENSMAMG00000012869lsm510078.723Mastacembelus_armatus
ENSAMXG00000035543lsm59683.333ENSMZEG00005019554lsm59983.333Maylandia_zebra
ENSAMXG00000035543lsm510081.915ENSMGAG00000012117LSM510081.915Meleagris_gallopavo
ENSAMXG00000035543lsm510080.851ENSMAUG00000008132-10080.851Mesocricetus_auratus
ENSAMXG00000035543lsm510081.915ENSMAUG00000012222Lsm510081.915Mesocricetus_auratus
ENSAMXG00000035543lsm59961.290ENSMICG00000033928-9661.290Microcebus_murinus
ENSAMXG00000035543lsm510081.915ENSMICG00000005353LSM510081.915Microcebus_murinus
ENSAMXG00000035543lsm510081.915ENSMOCG00000012018Lsm510081.915Microtus_ochrogaster
ENSAMXG00000035543lsm58483.544ENSMMOG00000004026lsm58783.544Mola_mola
ENSAMXG00000035543lsm56978.462ENSMODG00000013274-10078.462Monodelphis_domestica
ENSAMXG00000035543lsm56976.923ENSMALG00000010343lsm510076.923Monopterus_albus
ENSAMXG00000035543lsm510081.915MGP_CAROLIEiJ_G0028421Lsm510081.915Mus_caroli
ENSAMXG00000035543lsm510081.915ENSMUSG00000091625Lsm510081.915Mus_musculus
ENSAMXG00000035543lsm510081.915MGP_PahariEiJ_G0022171Lsm510081.915Mus_pahari
ENSAMXG00000035543lsm510081.915MGP_SPRETEiJ_G0029423Lsm510081.915Mus_spretus
ENSAMXG00000035543lsm510081.915ENSMLUG00000017028LSM510081.915Myotis_lucifugus
ENSAMXG00000035543lsm510081.915ENSNGAG00000024142Lsm510081.915Nannospalax_galili
ENSAMXG00000035543lsm59967.742ENSNGAG00000022569-9667.742Nannospalax_galili
ENSAMXG00000035543lsm510072.340ENSNGAG00000017707-10072.340Nannospalax_galili
ENSAMXG00000035543lsm510081.915ENSNLEG00000015268LSM510081.915Nomascus_leucogenys
ENSAMXG00000035543lsm58382.051ENSOPRG00000002443LSM510082.051Ochotona_princeps
ENSAMXG00000035543lsm510081.915ENSODEG00000019072-10081.915Octodon_degus
ENSAMXG00000035543lsm510081.915ENSODEG00000008258-10081.915Octodon_degus
ENSAMXG00000035543lsm58352.564ENSOANG00000014540-10048.718Ornithorhynchus_anatinus
ENSAMXG00000035543lsm510081.915ENSOCUG00000029043LSM510081.915Oryctolagus_cuniculus
ENSAMXG00000035543lsm510081.915ENSORLG00000027725lsm55881.915Oryzias_latipes
ENSAMXG00000035543lsm59677.778ENSORLG00020003019lsm58677.778Oryzias_latipes_hni
ENSAMXG00000035543lsm510081.915ENSORLG00015003338lsm510081.915Oryzias_latipes_hsok
ENSAMXG00000035543lsm510082.979ENSOMEG00000001078lsm510082.979Oryzias_melastigma
ENSAMXG00000035543lsm510081.915ENSOGAG00000013892LSM510081.915Otolemur_garnettii
ENSAMXG00000035543lsm510081.915ENSOARG00000006944LSM510081.915Ovis_aries
ENSAMXG00000035543lsm510081.915ENSPPAG00000003697-10081.915Pan_paniscus
ENSAMXG00000035543lsm510081.915ENSPPRG00000002550LSM510081.915Panthera_pardus
ENSAMXG00000035543lsm510081.915ENSPTIG00000015604LSM510081.915Panthera_tigris_altaica
ENSAMXG00000035543lsm510069.149ENSPTRG00000049488-10069.149Pan_troglodytes
ENSAMXG00000035543lsm510081.915ENSPTRG00000019057LSM510081.915Pan_troglodytes
ENSAMXG00000035543lsm510078.723ENSPANG00000033477-10078.723Papio_anubis
ENSAMXG00000035543lsm510081.915ENSPANG00000032179-10081.915Papio_anubis
ENSAMXG00000035543lsm59972.043ENSPANG00000032538-10072.043Papio_anubis
ENSAMXG00000035543lsm510085.106ENSPKIG00000011910lsm510085.106Paramormyrops_kingsleyae
ENSAMXG00000035543lsm58281.818ENSPSIG00000014796LSM510081.818Pelodiscus_sinensis
ENSAMXG00000035543lsm56980.000ENSPMGG00000011699lsm510080.000Periophthalmus_magnuspinnatus
ENSAMXG00000035543lsm510058.511ENSPEMG00000022375-10056.383Peromyscus_maniculatus_bairdii
ENSAMXG00000035543lsm510084.043ENSPFOG00000001433lsm510084.043Poecilia_formosa
ENSAMXG00000035543lsm510084.043ENSPLAG00000009665lsm510084.043Poecilia_latipinna
ENSAMXG00000035543lsm510084.043ENSPMEG00000022265lsm510084.043Poecilia_mexicana
ENSAMXG00000035543lsm56980.000ENSPREG00000022452lsm510080.000Poecilia_reticulata
ENSAMXG00000035543lsm510078.723ENSPPYG00000017661LSM510078.723Pongo_abelii
ENSAMXG00000035543lsm58980.952ENSPCAG00000013740LSM510080.952Procavia_capensis
ENSAMXG00000035543lsm510081.915ENSPVAG00000009786LSM510081.915Pteropus_vampyrus
ENSAMXG00000035543lsm59683.333ENSPNYG00000022236lsm59983.333Pundamilia_nyererei
ENSAMXG00000035543lsm510086.170ENSPNAG00000001887lsm510086.170Pygocentrus_nattereri
ENSAMXG00000035543lsm510077.895ENSRNOG00000027305AABR07065089.110077.895Rattus_norvegicus
ENSAMXG00000035543lsm510081.915ENSRNOG00000042126Lsm510081.915Rattus_norvegicus
ENSAMXG00000035543lsm510081.915ENSRBIG00000030714-10081.915Rhinopithecus_bieti
ENSAMXG00000035543lsm510081.915ENSRBIG00000030340-10081.915Rhinopithecus_bieti
ENSAMXG00000035543lsm510080.851ENSRBIG00000024431-10080.851Rhinopithecus_bieti
ENSAMXG00000035543lsm510081.915ENSRBIG00000027803-10081.915Rhinopithecus_bieti
ENSAMXG00000035543lsm510081.915ENSRROG00000023884-10081.915Rhinopithecus_roxellana
ENSAMXG00000035543lsm510081.915ENSRROG00000042782-10081.915Rhinopithecus_roxellana
ENSAMXG00000035543lsm510081.915ENSRROG00000004655-10081.915Rhinopithecus_roxellana
ENSAMXG00000035543lsm58536.471YER146W-8836.471Saccharomyces_cerevisiae
ENSAMXG00000035543lsm510081.915ENSSBOG00000012312LSM510081.915Saimiri_boliviensis_boliviensis
ENSAMXG00000035543lsm510061.702ENSSBOG00000034794-10060.638Saimiri_boliviensis_boliviensis
ENSAMXG00000035543lsm510079.787ENSSBOG00000019124-10079.787Saimiri_boliviensis_boliviensis
ENSAMXG00000035543lsm510085.106ENSSFOG00015010099lsm510085.106Scleropages_formosus
ENSAMXG00000035543lsm510059.574ENSSMAG00000007895lsm510059.574Scophthalmus_maximus
ENSAMXG00000035543lsm56980.000ENSSDUG00000010762lsm510080.000Seriola_dumerili
ENSAMXG00000035543lsm58667.901ENSSLDG00000008014-9265.000Seriola_lalandi_dorsalis
ENSAMXG00000035543lsm510084.043ENSSLDG00000025242lsm510084.043Seriola_lalandi_dorsalis
ENSAMXG00000035543lsm510054.255ENSSARG00000003330LSM510054.255Sorex_araneus
ENSAMXG00000035543lsm510081.915ENSSPUG00000002690LSM510081.915Sphenodon_punctatus
ENSAMXG00000035543lsm510059.574ENSSPAG00000005435lsm510059.574Stegastes_partitus
ENSAMXG00000035543lsm510081.915ENSSSCG00000026064-10081.915Sus_scrofa
ENSAMXG00000035543lsm57772.222ENSSSCG00000029661-9672.222Sus_scrofa
ENSAMXG00000035543lsm510082.979ENSTGUG00000017539LSM510082.979Taeniopygia_guttata
ENSAMXG00000035543lsm58678.313ENSTRUG00000017749lsm56478.313Takifugu_rubripes
ENSAMXG00000035543lsm59683.333ENSTNIG00000008695lsm59983.333Tetraodon_nigroviridis
ENSAMXG00000035543lsm510081.915ENSTBEG00000004876LSM510081.915Tupaia_belangeri
ENSAMXG00000035543lsm510081.915ENSTTRG00000004237LSM510081.915Tursiops_truncatus
ENSAMXG00000035543lsm59981.720ENSUMAG00000002625LSM56580.851Ursus_maritimus
ENSAMXG00000035543lsm510081.915ENSVPAG00000009985LSM510081.915Vicugna_pacos
ENSAMXG00000035543lsm510081.915ENSVVUG00000021311LSM510081.915Vulpes_vulpes
ENSAMXG00000035543lsm59080.000ENSXETG00000026465lsm510080.000Xenopus_tropicalis
ENSAMXG00000035543lsm56980.000ENSXCOG00000015348lsm510080.000Xiphophorus_couchianus
ENSAMXG00000035543lsm510084.043ENSXMAG00000029988lsm510084.043Xiphophorus_maculatus

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