EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000035683 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 5128 bases
Position: chrAPWO02000247.1:110516-115643
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000040752	zf-C2H2	PF00096.26	8.6e-42	1	7
ENSAMXP00000040752	zf-C2H2	PF00096.26	8.6e-42	2	7
ENSAMXP00000040752	zf-C2H2	PF00096.26	8.6e-42	3	7
ENSAMXP00000040752	zf-C2H2	PF00096.26	8.6e-42	4	7
ENSAMXP00000040752	zf-C2H2	PF00096.26	8.6e-42	5	7
ENSAMXP00000040752	zf-C2H2	PF00096.26	8.6e-42	6	7
ENSAMXP00000040752	zf-C2H2	PF00096.26	8.6e-42	7	7
ENSAMXP00000040752	zf-met	PF12874.7	4.1e-10	1	3
ENSAMXP00000040752	zf-met	PF12874.7	4.1e-10	2	3
ENSAMXP00000040752	zf-met	PF12874.7	4.1e-10	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000050048	-	636	-	ENSAMXP00000040752	211 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000035683's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000035683's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000035683	-	97	64.767	ENSAMXG00000036849	-	83	64.767
ENSAMXG00000035683	-	91	67.876	ENSAMXG00000038453	-	83	67.876
ENSAMXG00000035683	-	95	66.321	ENSAMXG00000038324	-	75	66.321
ENSAMXG00000035683	-	91	71.271	ENSAMXG00000031646	-	94	71.271
ENSAMXG00000035683	-	94	57.576	ENSAMXG00000038284	-	95	57.576
ENSAMXG00000035683	-	97	41.414	ENSAMXG00000024907	znf319b	85	41.414
ENSAMXG00000035683	-	98	53.403	ENSAMXG00000034857	-	65	53.403
ENSAMXG00000035683	-	95	63.731	ENSAMXG00000037717	-	95	63.731
ENSAMXG00000035683	-	94	61.658	ENSAMXG00000034402	-	93	61.658
ENSAMXG00000035683	-	95	58.081	ENSAMXG00000038325	-	94	58.081
ENSAMXG00000035683	-	99	77.000	ENSAMXG00000034958	-	94	77.000
ENSAMXG00000035683	-	91	42.735	ENSAMXG00000032845	-	56	38.519
ENSAMXG00000035683	-	96	58.025	ENSAMXG00000042167	-	92	58.025
ENSAMXG00000035683	-	93	61.850	ENSAMXG00000012604	-	97	61.850
ENSAMXG00000035683	-	91	38.519	ENSAMXG00000038235	snai2	53	38.519
ENSAMXG00000035683	-	94	60.773	ENSAMXG00000042746	-	88	60.773
ENSAMXG00000035683	-	93	68.639	ENSAMXG00000039182	-	65	68.639
ENSAMXG00000035683	-	96	65.803	ENSAMXG00000037760	-	96	65.803
ENSAMXG00000035683	-	94	59.459	ENSAMXG00000029783	-	91	56.784
ENSAMXG00000035683	-	94	51.269	ENSAMXG00000035127	-	89	47.312
ENSAMXG00000035683	-	97	63.731	ENSAMXG00000033201	-	96	63.731
ENSAMXG00000035683	-	99	62.176	ENSAMXG00000042633	-	98	62.176
ENSAMXG00000035683	-	91	72.353	ENSAMXG00000033500	-	92	72.353
ENSAMXG00000035683	-	95	71.500	ENSAMXG00000041609	-	94	73.057
ENSAMXG00000035683	-	94	59.043	ENSAMXG00000032237	-	92	59.043
ENSAMXG00000035683	-	95	71.500	ENSAMXG00000043423	-	76	71.500
ENSAMXG00000035683	-	93	63.776	ENSAMXG00000043291	-	62	63.776
ENSAMXG00000035683	-	93	63.212	ENSAMXG00000017959	-	95	63.212
ENSAMXG00000035683	-	93	67.742	ENSAMXG00000030742	-	98	67.742
ENSAMXG00000035683	-	91	72.539	ENSAMXG00000041975	-	80	72.539
ENSAMXG00000035683	-	92	35.676	ENSAMXG00000016921	znf341	53	37.419
ENSAMXG00000035683	-	94	73.057	ENSAMXG00000011804	-	87	73.057
ENSAMXG00000035683	-	94	49.112	ENSAMXG00000033252	-	95	49.112
ENSAMXG00000035683	-	94	43.750	ENSAMXG00000035246	-	65	43.750
ENSAMXG00000035683	-	98	45.161	ENSAMXG00000034333	-	85	48.958
ENSAMXG00000035683	-	91	72.021	ENSAMXG00000025965	-	94	72.021
ENSAMXG00000035683	-	92	52.151	ENSAMXG00000014745	-	82	50.311
ENSAMXG00000035683	-	94	67.358	ENSAMXG00000040630	-	98	67.358
ENSAMXG00000035683	-	91	59.896	ENSAMXG00000043541	-	80	59.896
ENSAMXG00000035683	-	91	62.162	ENSAMXG00000030963	-	56	62.162
ENSAMXG00000035683	-	97	65.868	ENSAMXG00000031496	-	88	65.868
ENSAMXG00000035683	-	91	69.412	ENSAMXG00000029878	-	94	69.412
ENSAMXG00000035683	-	91	56.044	ENSAMXG00000043302	-	72	56.044
ENSAMXG00000035683	-	94	64.211	ENSAMXG00000001626	-	98	64.211
ENSAMXG00000035683	-	91	68.852	ENSAMXG00000035145	-	63	68.852
ENSAMXG00000035683	-	95	61.257	ENSAMXG00000039770	-	86	61.257
ENSAMXG00000035683	-	96	58.163	ENSAMXG00000026144	-	92	58.163
ENSAMXG00000035683	-	93	67.358	ENSAMXG00000026142	-	90	67.358
ENSAMXG00000035683	-	94	57.068	ENSAMXG00000026143	-	94	57.068
ENSAMXG00000035683	-	96	64.331	ENSAMXG00000032212	-	89	64.331
ENSAMXG00000035683	-	95	68.085	ENSAMXG00000035437	-	98	68.085
ENSAMXG00000035683	-	95	73.500	ENSAMXG00000036233	-	79	73.500
ENSAMXG00000035683	-	94	60.215	ENSAMXG00000042174	-	90	60.215
ENSAMXG00000035683	-	94	57.576	ENSAMXG00000019489	-	89	57.576
ENSAMXG00000035683	-	94	62.431	ENSAMXG00000038536	-	88	62.431
ENSAMXG00000035683	-	91	72.527	ENSAMXG00000035809	-	99	72.527
ENSAMXG00000035683	-	93	64.286	ENSAMXG00000037143	-	93	64.286
ENSAMXG00000035683	-	98	56.934	ENSAMXG00000033124	-	65	56.934
ENSAMXG00000035683	-	98	70.213	ENSAMXG00000030530	-	97	70.213
ENSAMXG00000035683	-	94	70.312	ENSAMXG00000039432	-	94	70.312
ENSAMXG00000035683	-	95	69.000	ENSAMXG00000035690	-	74	69.000
ENSAMXG00000035683	-	94	35.185	ENSAMXG00000039849	snai1b	55	35.185
ENSAMXG00000035683	-	92	35.238	ENSAMXG00000038085	scrt1a	52	34.848
ENSAMXG00000035683	-	91	73.481	ENSAMXG00000031900	-	94	73.481
ENSAMXG00000035683	-	98	40.513	ENSAMXG00000025761	-	87	40.513
ENSAMXG00000035683	-	95	61.500	ENSAMXG00000039700	-	89	63.243
ENSAMXG00000035683	-	95	60.622	ENSAMXG00000013274	-	92	61.702
ENSAMXG00000035683	-	91	72.251	ENSAMXG00000039162	-	95	72.251
ENSAMXG00000035683	-	95	70.899	ENSAMXG00000038636	-	99	70.899
ENSAMXG00000035683	-	94	71.176	ENSAMXG00000031794	-	95	71.176
ENSAMXG00000035683	-	93	51.064	ENSAMXG00000013492	-	96	50.000
ENSAMXG00000035683	-	96	36.869	ENSAMXG00000029059	-	61	36.686
ENSAMXG00000035683	-	93	57.895	ENSAMXG00000042784	-	94	53.509
ENSAMXG00000035683	-	91	72.539	ENSAMXG00000039879	-	98	72.539
ENSAMXG00000035683	-	93	68.987	ENSAMXG00000031489	-	93	68.987
ENSAMXG00000035683	-	92	70.323	ENSAMXG00000030911	-	65	70.323
ENSAMXG00000035683	-	95	42.708	ENSAMXG00000033299	-	68	42.708
ENSAMXG00000035683	-	91	71.503	ENSAMXG00000032457	-	90	71.503
ENSAMXG00000035683	-	94	59.783	ENSAMXG00000043019	-	91	59.783
ENSAMXG00000035683	-	92	68.786	ENSAMXG00000029828	-	98	68.786
ENSAMXG00000035683	-	91	69.412	ENSAMXG00000041128	-	87	69.412
ENSAMXG00000035683	-	91	72.021	ENSAMXG00000037885	-	97	72.021
ENSAMXG00000035683	-	91	60.417	ENSAMXG00000041650	-	85	60.417
ENSAMXG00000035683	-	94	66.321	ENSAMXG00000039004	-	88	66.321
ENSAMXG00000035683	-	93	72.021	ENSAMXG00000024978	-	97	72.021
ENSAMXG00000035683	-	95	62.500	ENSAMXG00000037923	-	99	62.500
ENSAMXG00000035683	-	95	52.410	ENSAMXG00000043178	-	72	52.410
ENSAMXG00000035683	-	95	73.500	ENSAMXG00000003002	-	90	73.500
ENSAMXG00000035683	-	94	61.940	ENSAMXG00000038280	-	86	61.940
ENSAMXG00000035683	-	91	50.000	ENSAMXG00000041862	-	95	50.000
ENSAMXG00000035683	-	94	43.787	ENSAMXG00000041864	prdm5	88	43.787
ENSAMXG00000035683	-	92	69.948	ENSAMXG00000041865	-	97	69.948
ENSAMXG00000035683	-	91	73.714	ENSAMXG00000025455	-	98	73.714
ENSAMXG00000035683	-	95	77.000	ENSAMXG00000025452	-	96	77.000
ENSAMXG00000035683	-	99	68.394	ENSAMXG00000042275	-	93	68.394
ENSAMXG00000035683	-	94	56.995	ENSAMXG00000030659	-	78	56.995
ENSAMXG00000035683	-	91	74.346	ENSAMXG00000004610	-	96	74.346
ENSAMXG00000035683	-	95	71.591	ENSAMXG00000008613	-	97	71.591
ENSAMXG00000035683	-	94	60.753	ENSAMXG00000038905	-	89	60.753
ENSAMXG00000035683	-	94	40.000	ENSAMXG00000007441	-	57	40.000
ENSAMXG00000035683	-	95	46.591	ENSAMXG00000012589	-	85	46.591
ENSAMXG00000035683	-	91	70.930	ENSAMXG00000031009	-	83	70.930
ENSAMXG00000035683	-	94	36.869	ENSAMXG00000039622	zbtb41	50	36.869
ENSAMXG00000035683	-	91	71.503	ENSAMXG00000036762	-	96	71.503
ENSAMXG00000035683	-	91	52.381	ENSAMXG00000038122	-	89	52.381
ENSAMXG00000035683	-	91	66.321	ENSAMXG00000039016	-	83	66.321
ENSAMXG00000035683	-	94	62.500	ENSAMXG00000033013	-	81	62.500
ENSAMXG00000035683	-	95	59.585	ENSAMXG00000010805	-	95	59.585
ENSAMXG00000035683	-	91	73.057	ENSAMXG00000041404	-	96	73.057
ENSAMXG00000035683	-	91	70.857	ENSAMXG00000039744	-	99	70.857
ENSAMXG00000035683	-	92	44.048	ENSAMXG00000033001	-	51	44.048
ENSAMXG00000035683	-	95	66.000	ENSAMXG00000037981	-	72	66.000
ENSAMXG00000035683	-	93	35.714	ENSAMXG00000034158	scrt2	52	35.714
ENSAMXG00000035683	-	98	63.429	ENSAMXG00000029161	-	80	63.429
ENSAMXG00000035683	-	94	60.096	ENSAMXG00000044107	-	87	60.096
ENSAMXG00000035683	-	94	70.984	ENSAMXG00000018161	-	95	70.984
ENSAMXG00000035683	-	96	70.500	ENSAMXG00000041861	-	90	70.500
ENSAMXG00000035683	-	95	63.946	ENSAMXG00000032841	-	77	63.946
ENSAMXG00000035683	-	95	42.400	ENSAMXG00000034873	-	81	42.400
ENSAMXG00000035683	-	95	59.064	ENSAMXG00000012873	-	93	59.064
ENSAMXG00000035683	-	93	67.914	ENSAMXG00000042938	-	87	67.914
ENSAMXG00000035683	-	94	75.916	ENSAMXG00000029178	-	98	75.916
ENSAMXG00000035683	-	94	68.394	ENSAMXG00000035949	-	77	68.394
ENSAMXG00000035683	-	94	45.217	ENSAMXG00000034934	-	79	45.217
ENSAMXG00000035683	-	96	62.963	ENSAMXG00000036241	-	84	62.963
ENSAMXG00000035683	-	91	71.585	ENSAMXG00000031501	-	88	71.585
ENSAMXG00000035683	-	95	68.912	ENSAMXG00000032619	-	99	68.912
ENSAMXG00000035683	-	95	74.500	ENSAMXG00000040212	-	86	74.500
ENSAMXG00000035683	-	91	72.539	ENSAMXG00000043251	-	95	72.539
ENSAMXG00000035683	-	96	66.667	ENSAMXG00000009563	-	94	60.417
ENSAMXG00000035683	-	91	39.645	ENSAMXG00000006669	GFI1	54	39.645
ENSAMXG00000035683	-	97	65.285	ENSAMXG00000029960	-	97	65.285
ENSAMXG00000035683	-	91	61.979	ENSAMXG00000029109	-	86	61.979
ENSAMXG00000035683	-	99	63.584	ENSAMXG00000039752	-	92	63.584
ENSAMXG00000035683	-	97	65.500	ENSAMXG00000040677	-	98	65.500
ENSAMXG00000035683	-	93	65.969	ENSAMXG00000035875	-	99	65.969
ENSAMXG00000035683	-	93	72.619	ENSAMXG00000007092	-	98	72.619
ENSAMXG00000035683	-	91	68.912	ENSAMXG00000000353	-	93	68.912
ENSAMXG00000035683	-	93	41.228	ENSAMXG00000015228	-	51	41.228
ENSAMXG00000035683	-	94	52.427	ENSAMXG00000007973	-	90	46.053
ENSAMXG00000035683	-	92	64.286	ENSAMXG00000029518	-	52	64.286
ENSAMXG00000035683	-	93	75.000	ENSAMXG00000035920	-	89	75.000
ENSAMXG00000035683	-	96	55.856	ENSAMXG00000031307	-	60	55.856
ENSAMXG00000035683	-	93	66.667	ENSAMXG00000037326	-	92	66.667
ENSAMXG00000035683	-	94	37.000	ENSAMXG00000042191	zbtb47a	69	38.298
ENSAMXG00000035683	-	91	71.503	ENSAMXG00000037703	-	83	71.503
ENSAMXG00000035683	-	95	48.592	ENSAMXG00000035286	si:ch1073-224n8.1	83	47.917
ENSAMXG00000035683	-	96	68.000	ENSAMXG00000039408	-	92	68.000
ENSAMXG00000035683	-	97	69.399	ENSAMXG00000010930	-	79	69.399
ENSAMXG00000035683	-	99	75.648	ENSAMXG00000017609	-	82	75.648
ENSAMXG00000035683	-	91	60.104	ENSAMXG00000043978	-	89	60.104
ENSAMXG00000035683	-	94	63.959	ENSAMXG00000042593	-	92	63.959
ENSAMXG00000035683	-	88	43.915	ENSAMXG00000044096	-	79	43.915
ENSAMXG00000035683	-	91	57.798	ENSAMXG00000036633	-	62	60.366
ENSAMXG00000035683	-	93	65.128	ENSAMXG00000044110	-	87	65.128
ENSAMXG00000035683	-	98	59.898	ENSAMXG00000034096	-	75	59.898
ENSAMXG00000035683	-	94	57.500	ENSAMXG00000036257	-	91	57.500
ENSAMXG00000035683	-	95	67.500	ENSAMXG00000031844	-	92	67.500
ENSAMXG00000035683	-	96	65.025	ENSAMXG00000042774	-	99	65.025
ENSAMXG00000035683	-	91	62.353	ENSAMXG00000044028	-	97	62.011
ENSAMXG00000035683	-	94	60.209	ENSAMXG00000036915	-	94	60.209
ENSAMXG00000035683	-	96	60.526	ENSAMXG00000037709	-	82	61.053
ENSAMXG00000035683	-	91	47.436	ENSAMXG00000037382	-	75	37.097
ENSAMXG00000035683	-	91	71.585	ENSAMXG00000036567	-	75	71.585
ENSAMXG00000035683	-	92	71.098	ENSAMXG00000009558	-	94	71.098
ENSAMXG00000035683	-	94	67.456	ENSAMXG00000010078	-	86	67.456
ENSAMXG00000035683	-	95	63.500	ENSAMXG00000041721	-	69	63.500
ENSAMXG00000035683	-	98	40.678	ENSAMXG00000035525	znf646	67	40.678
ENSAMXG00000035683	-	94	38.318	ENSAMXG00000044034	-	73	36.158
ENSAMXG00000035683	-	95	65.000	ENSAMXG00000040806	-	90	65.000
ENSAMXG00000035683	-	98	75.243	ENSAMXG00000039977	-	93	75.243
ENSAMXG00000035683	-	95	69.886	ENSAMXG00000034847	-	85	69.886
ENSAMXG00000035683	-	94	69.886	ENSAMXG00000009776	-	96	69.886
ENSAMXG00000035683	-	95	66.321	ENSAMXG00000041725	-	96	66.321
ENSAMXG00000035683	-	95	56.637	ENSAMXG00000034344	-	75	56.637

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000035683	-	91	49.112	ENSACIG00000017013	-	54	49.112	Amphilophus_citrinellus
ENSAMXG00000035683	-	97	53.293	ENSCPBG00000002063	-	55	53.293	Chrysemys_picta_bellii
ENSAMXG00000035683	-	95	54.110	ENSGAGG00000005331	-	92	54.110	Gopherus_agassizii
ENSAMXG00000035683	-	92	52.419	ENSGAGG00000017640	-	57	52.419	Gopherus_agassizii
ENSAMXG00000035683	-	93	47.959	ENSHCOG00000001292	-	68	47.959	Hippocampus_comes
ENSAMXG00000035683	-	94	50.568	ENSHCOG00000014786	-	96	50.568	Hippocampus_comes
ENSAMXG00000035683	-	91	66.471	ENSIPUG00000015601	-	51	66.471	Ictalurus_punctatus
ENSAMXG00000035683	-	92	63.314	ENSIPUG00000015203	-	63	63.314	Ictalurus_punctatus
ENSAMXG00000035683	-	91	49.462	ENSORLG00020001707	-	75	49.462	Oryzias_latipes_hni
ENSAMXG00000035683	-	94	56.410	ENSPCIG00000019333	-	96	56.410	Phascolarctos_cinereus
ENSAMXG00000035683	-	94	46.154	ENSPFOG00000011209	-	52	46.154	Poecilia_formosa
ENSAMXG00000035683	-	94	53.247	ENSPFOG00000024567	-	99	53.247	Poecilia_formosa
ENSAMXG00000035683	-	91	44.654	ENSPMEG00000016762	-	87	44.654	Poecilia_mexicana
ENSAMXG00000035683	-	91	65.445	ENSPNAG00000009741	-	55	65.445	Pygocentrus_nattereri
ENSAMXG00000035683	-	94	60.622	ENSPNAG00000008491	-	74	60.622	Pygocentrus_nattereri
ENSAMXG00000035683	-	95	62.500	ENSPNAG00000018409	-	83	62.500	Pygocentrus_nattereri