EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000035996 (Gene tree)
Gene ID: 103029385
Gene Symbol: srsf1a
Alias: sfrs1a|sfrs1l|wu:fb52g10|wu:fb97g12|zgc:66146
Full Name: serine and arginine rich splicing factor 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 10110 bases
Position: chr1:23341516-23351625
Accession: 103029385
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000037774	RRM_1	PF00076.22	1.9e-33	1	2
ENSAMXP00000037774	RRM_1	PF00076.22	1.9e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000034988	-	5680	XM_007248632	ENSAMXP00000037774	252 (aa)	XP_007248694	W5K970

Gene Model

Click here to download ENSAMXG00000035996's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG
amex05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000035996's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000035996	srsf1a	67	46.784	ENSAMXG00000034811	srsf4	77	39.381
ENSAMXG00000035996	srsf1a	55	80.000	ENSAMXG00000024373	-	89	75.622
ENSAMXG00000035996	srsf1a	66	44.318	ENSAMXG00000042692	-	99	41.096
ENSAMXG00000035996	srsf1a	67	45.000	ENSAMXG00000030476	srsf5a	62	44.886
ENSAMXG00000035996	srsf1a	73	68.306	ENSAMXG00000032281	srsf9	73	68.852
ENSAMXG00000035996	srsf1a	65	50.000	ENSAMXG00000011932	srsf5b	82	49.206

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000035996	srsf1a	98	93.145	ENSG00000136450	SRSF1	95	96.774	Homo_sapiens
ENSAMXG00000035996	srsf1a	79	88.384	ENSAPOG00000002748	-	95	80.335	Acanthochromis_polyacanthus
ENSAMXG00000035996	srsf1a	79	93.000	ENSAPOG00000008542	-	94	87.500	Acanthochromis_polyacanthus
ENSAMXG00000035996	srsf1a	79	86.935	ENSAMEG00000002635	SRSF1	94	89.958	Ailuropoda_melanoleuca
ENSAMXG00000035996	srsf1a	79	88.384	ENSACIG00000008091	srsf1a	83	86.364	Amphilophus_citrinellus
ENSAMXG00000035996	srsf1a	79	88.889	ENSAOCG00000010671	-	95	80.753	Amphiprion_ocellaris
ENSAMXG00000035996	srsf1a	79	93.000	ENSAOCG00000000337	-	95	87.500	Amphiprion_ocellaris
ENSAMXG00000035996	srsf1a	79	88.889	ENSAPEG00000009915	-	95	80.753	Amphiprion_percula
ENSAMXG00000035996	srsf1a	79	93.000	ENSAPEG00000023352	-	94	87.500	Amphiprion_percula
ENSAMXG00000035996	srsf1a	80	88.119	ENSATEG00000021567	-	96	81.818	Anabas_testudineus
ENSAMXG00000035996	srsf1a	79	88.889	ENSATEG00000022403	-	77	86.869	Anabas_testudineus
ENSAMXG00000035996	srsf1a	79	93.970	ENSACAG00000005542	-	94	92.469	Anolis_carolinensis
ENSAMXG00000035996	srsf1a	80	67.327	ENSANAG00000025417	-	93	68.619	Aotus_nancymaae
ENSAMXG00000035996	srsf1a	98	93.145	ENSANAG00000020583	-	95	95.652	Aotus_nancymaae
ENSAMXG00000035996	srsf1a	98	93.145	ENSBTAG00000014766	SRSF1	94	91.632	Bos_taurus
ENSAMXG00000035996	srsf1a	98	93.145	ENSCJAG00000041713	-	95	95.652	Callithrix_jacchus
ENSAMXG00000035996	srsf1a	79	85.427	ENSCJAG00000008111	-	86	83.417	Callithrix_jacchus
ENSAMXG00000035996	srsf1a	98	93.145	ENSCAFG00000017430	SRSF1	92	91.632	Canis_familiaris
ENSAMXG00000035996	srsf1a	98	93.145	ENSCAFG00020025632	-	92	91.632	Canis_lupus_dingo
ENSAMXG00000035996	srsf1a	79	92.965	ENSCHIG00000010787	SRSF1	94	91.632	Capra_hircus
ENSAMXG00000035996	srsf1a	98	93.145	ENSTSYG00000013899	-	95	95.652	Carlito_syrichta
ENSAMXG00000035996	srsf1a	98	93.145	ENSCPOG00000032681	-	94	91.632	Cavia_porcellus
ENSAMXG00000035996	srsf1a	98	93.145	ENSCCAG00000029484	-	95	95.652	Cebus_capucinus
ENSAMXG00000035996	srsf1a	98	93.145	ENSCATG00000042294	-	95	95.652	Cercocebus_atys
ENSAMXG00000035996	srsf1a	98	93.145	ENSCLAG00000014707	-	94	91.632	Chinchilla_lanigera
ENSAMXG00000035996	srsf1a	98	92.339	ENSCSAG00000005642	-	92	90.795	Chlorocebus_sabaeus
ENSAMXG00000035996	srsf1a	79	92.965	ENSCHOG00000001899	SRSF1	94	91.632	Choloepus_hoffmanni
ENSAMXG00000035996	srsf1a	98	94.355	ENSCPBG00000009851	-	96	94.355	Chrysemys_picta_bellii
ENSAMXG00000035996	srsf1a	98	93.145	ENSCANG00000029726	-	95	95.652	Colobus_angolensis_palliatus
ENSAMXG00000035996	srsf1a	98	93.145	ENSCGRG00001000670	Srsf1	92	91.632	Cricetulus_griseus_chok1gshd
ENSAMXG00000035996	srsf1a	98	93.145	ENSCGRG00000005590	Srsf1	94	91.632	Cricetulus_griseus_crigri
ENSAMXG00000035996	srsf1a	79	84.211	ENSCSEG00000009973	-	95	80.000	Cynoglossus_semilaevis
ENSAMXG00000035996	srsf1a	79	92.424	ENSCSEG00000014272	-	95	82.845	Cynoglossus_semilaevis
ENSAMXG00000035996	srsf1a	79	88.889	ENSCVAG00000018617	-	95	80.753	Cyprinodon_variegatus
ENSAMXG00000035996	srsf1a	79	89.000	ENSCVAG00000005458	-	95	84.647	Cyprinodon_variegatus
ENSAMXG00000035996	srsf1a	80	94.527	ENSDARG00000017843	srsf1b	96	89.627	Danio_rerio
ENSAMXG00000035996	srsf1a	100	96.887	ENSDARG00000057691	srsf1a	100	96.891	Danio_rerio
ENSAMXG00000035996	srsf1a	98	93.145	ENSDNOG00000011737	-	92	91.632	Dasypus_novemcinctus
ENSAMXG00000035996	srsf1a	98	93.145	ENSDORG00000015082	Srsf1	94	91.632	Dipodomys_ordii
ENSAMXG00000035996	srsf1a	74	89.247	ENSETEG00000005349	-	62	90.323	Echinops_telfairi
ENSAMXG00000035996	srsf1a	98	93.145	ENSEASG00005002922	-	92	91.632	Equus_asinus_asinus
ENSAMXG00000035996	srsf1a	79	92.965	ENSECAG00000016654	SRSF1	94	91.632	Equus_caballus
ENSAMXG00000035996	srsf1a	74	93.011	ENSEEUG00000009255	-	62	91.398	Erinaceus_europaeus
ENSAMXG00000035996	srsf1a	80	91.045	ENSELUG00000021646	srsf1a	78	89.552	Esox_lucius
ENSAMXG00000035996	srsf1a	98	93.145	ENSFCAG00000002250	-	92	91.632	Felis_catus
ENSAMXG00000035996	srsf1a	98	78.629	ENSFALG00000005062	-	96	78.629	Ficedula_albicollis
ENSAMXG00000035996	srsf1a	98	93.145	ENSFDAG00000010646	-	94	91.632	Fukomys_damarensis
ENSAMXG00000035996	srsf1a	79	88.889	ENSFHEG00000003174	srsf1a	95	80.753	Fundulus_heteroclitus
ENSAMXG00000035996	srsf1a	92	84.549	ENSGMOG00000014787	-	96	80.672	Gadus_morhua
ENSAMXG00000035996	srsf1a	79	94.472	ENSGALG00000005525	SRSF1	94	92.887	Gallus_gallus
ENSAMXG00000035996	srsf1a	79	84.422	ENSGACG00000020621	srsf1b	78	82.412	Gasterosteus_aculeatus
ENSAMXG00000035996	srsf1a	98	94.355	ENSGAGG00000022965	-	96	94.355	Gopherus_agassizii
ENSAMXG00000035996	srsf1a	98	93.145	ENSGGOG00000004386	SRSF1	95	95.652	Gorilla_gorilla
ENSAMXG00000035996	srsf1a	79	88.384	ENSHBUG00000016788	srsf1a	95	80.335	Haplochromis_burtoni
ENSAMXG00000035996	srsf1a	67	92.899	ENSHGLG00000000600	-	95	91.388	Heterocephalus_glaber_female
ENSAMXG00000035996	srsf1a	67	92.899	ENSHGLG00000000669	-	95	91.388	Heterocephalus_glaber_female
ENSAMXG00000035996	srsf1a	98	93.145	ENSHGLG00100016906	-	94	91.632	Heterocephalus_glaber_male
ENSAMXG00000035996	srsf1a	80	87.065	ENSHCOG00000018918	srsf1a	78	86.070	Hippocampus_comes
ENSAMXG00000035996	srsf1a	99	98.000	ENSIPUG00000017039	srsf1a	99	98.000	Ictalurus_punctatus
ENSAMXG00000035996	srsf1a	79	94.000	ENSIPUG00000008750	srsf1b	95	88.750	Ictalurus_punctatus
ENSAMXG00000035996	srsf1a	98	93.145	ENSSTOG00000000243	-	94	91.632	Ictidomys_tridecemlineatus
ENSAMXG00000035996	srsf1a	51	86.047	ENSJJAG00000014464	-	93	83.846	Jaculus_jaculus
ENSAMXG00000035996	srsf1a	98	93.145	ENSJJAG00000000102	-	94	91.632	Jaculus_jaculus
ENSAMXG00000035996	srsf1a	79	88.889	ENSKMAG00000019232	srsf1a	95	80.335	Kryptolebias_marmoratus
ENSAMXG00000035996	srsf1a	79	87.437	ENSLBEG00000015294	-	94	81.590	Labrus_bergylta
ENSAMXG00000035996	srsf1a	79	89.899	ENSLBEG00000020864	-	95	81.590	Labrus_bergylta
ENSAMXG00000035996	srsf1a	79	90.500	ENSLACG00000014160	srsf1a	88	90.795	Latimeria_chalumnae
ENSAMXG00000035996	srsf1a	79	93.467	ENSLOCG00000005994	srsf1a	94	90.377	Lepisosteus_oculatus
ENSAMXG00000035996	srsf1a	79	92.965	ENSLAFG00000025743	SRSF1	94	91.632	Loxodonta_africana
ENSAMXG00000035996	srsf1a	98	93.145	ENSMFAG00000040003	-	95	95.652	Macaca_fascicularis
ENSAMXG00000035996	srsf1a	98	93.145	ENSMMUG00000004725	SRSF1	95	95.652	Macaca_mulatta
ENSAMXG00000035996	srsf1a	99	89.960	ENSMMUG00000003260	-	92	89.540	Macaca_mulatta
ENSAMXG00000035996	srsf1a	98	93.145	ENSMNEG00000027680	-	95	95.652	Macaca_nemestrina
ENSAMXG00000035996	srsf1a	99	89.558	ENSMNEG00000015983	-	92	89.121	Macaca_nemestrina
ENSAMXG00000035996	srsf1a	79	92.965	ENSMLEG00000040509	SRSF1	94	91.632	Mandrillus_leucophaeus
ENSAMXG00000035996	srsf1a	98	86.290	ENSMLEG00000015243	-	92	87.448	Mandrillus_leucophaeus
ENSAMXG00000035996	srsf1a	79	93.467	ENSMAMG00000019691	-	95	86.192	Mastacembelus_armatus
ENSAMXG00000035996	srsf1a	79	87.940	ENSMAMG00000019687	-	94	83.264	Mastacembelus_armatus
ENSAMXG00000035996	srsf1a	79	88.889	ENSMAMG00000018454	-	95	80.753	Mastacembelus_armatus
ENSAMXG00000035996	srsf1a	98	93.145	ENSMAUG00000021845	Srsf1	94	91.632	Mesocricetus_auratus
ENSAMXG00000035996	srsf1a	98	93.145	ENSMICG00000013639	-	95	95.652	Microcebus_murinus
ENSAMXG00000035996	srsf1a	98	93.145	ENSMOCG00000001996	Srsf1	94	91.632	Microtus_ochrogaster
ENSAMXG00000035996	srsf1a	79	89.394	ENSMMOG00000014354	srsf1a	83	87.879	Mola_mola
ENSAMXG00000035996	srsf1a	74	94.086	ENSMODG00000014781	-	62	94.086	Monodelphis_domestica
ENSAMXG00000035996	srsf1a	79	88.384	ENSMALG00000017129	-	75	85.859	Monopterus_albus
ENSAMXG00000035996	srsf1a	82	80.097	ENSMALG00000007763	-	78	79.899	Monopterus_albus
ENSAMXG00000035996	srsf1a	98	93.145	MGP_CAROLIEiJ_G0016943	Srsf1	94	91.632	Mus_caroli
ENSAMXG00000035996	srsf1a	98	93.145	ENSMUSG00000018379	Srsf1	94	91.632	Mus_musculus
ENSAMXG00000035996	srsf1a	98	93.145	MGP_PahariEiJ_G0018074	Srsf1	94	91.632	Mus_pahari
ENSAMXG00000035996	srsf1a	98	93.145	MGP_SPRETEiJ_G0017790	Srsf1	94	91.632	Mus_spretus
ENSAMXG00000035996	srsf1a	79	92.965	ENSMPUG00000015369	SRSF1	94	91.632	Mustela_putorius_furo
ENSAMXG00000035996	srsf1a	81	85.366	ENSMLUG00000023995	-	94	86.192	Myotis_lucifugus
ENSAMXG00000035996	srsf1a	79	92.965	ENSMLUG00000011040	SRSF1	94	91.632	Myotis_lucifugus
ENSAMXG00000035996	srsf1a	79	92.965	ENSNGAG00000011395	Srsf1	94	91.632	Nannospalax_galili
ENSAMXG00000035996	srsf1a	99	79.600	ENSNBRG00000008041	srsf1b	78	79.397	Neolamprologus_brichardi
ENSAMXG00000035996	srsf1a	98	93.145	ENSNLEG00000008088	-	95	95.652	Nomascus_leucogenys
ENSAMXG00000035996	srsf1a	51	92.188	ENSMEUG00000002783	-	98	89.922	Notamacropus_eugenii
ENSAMXG00000035996	srsf1a	54	91.241	ENSOPRG00000001234	-	94	89.831	Ochotona_princeps
ENSAMXG00000035996	srsf1a	98	93.145	ENSODEG00000011481	-	94	91.632	Octodon_degus
ENSAMXG00000035996	srsf1a	95	89.540	ENSONIG00000004860	-	79	90.452	Oreochromis_niloticus
ENSAMXG00000035996	srsf1a	79	88.384	ENSONIG00000013160	-	94	80.335	Oreochromis_niloticus
ENSAMXG00000035996	srsf1a	99	67.984	ENSOCUG00000010894	-	75	70.408	Oryctolagus_cuniculus
ENSAMXG00000035996	srsf1a	79	88.889	ENSORLG00000004580	srsf1a	95	80.753	Oryzias_latipes
ENSAMXG00000035996	srsf1a	79	88.889	ENSORLG00020009456	srsf1a	95	80.753	Oryzias_latipes_hni
ENSAMXG00000035996	srsf1a	79	88.889	ENSORLG00015014384	srsf1a	83	86.869	Oryzias_latipes_hsok
ENSAMXG00000035996	srsf1a	72	87.293	ENSOMEG00000004106	srsf1a	71	85.083	Oryzias_melastigma
ENSAMXG00000035996	srsf1a	83	93.333	ENSOGAG00000025950	-	94	91.632	Otolemur_garnettii
ENSAMXG00000035996	srsf1a	79	85.930	ENSOARG00000008323	SRSF1	94	87.448	Ovis_aries
ENSAMXG00000035996	srsf1a	98	93.145	ENSPPAG00000043403	-	95	95.652	Pan_paniscus
ENSAMXG00000035996	srsf1a	98	93.145	ENSPPRG00000004238	-	94	91.632	Panthera_pardus
ENSAMXG00000035996	srsf1a	98	93.145	ENSPTRG00000049077	SRSF1	95	95.652	Pan_troglodytes
ENSAMXG00000035996	srsf1a	99	71.315	ENSPANG00000030275	-	71	93.333	Papio_anubis
ENSAMXG00000035996	srsf1a	98	93.145	ENSPANG00000022305	-	95	95.652	Papio_anubis
ENSAMXG00000035996	srsf1a	79	93.467	ENSPKIG00000012857	srsf1b	94	88.703	Paramormyrops_kingsleyae
ENSAMXG00000035996	srsf1a	80	92.040	ENSPKIG00000007204	srsf1a	96	90.041	Paramormyrops_kingsleyae
ENSAMXG00000035996	srsf1a	79	87.065	ENSPSIG00000009000	-	94	86.722	Pelodiscus_sinensis
ENSAMXG00000035996	srsf1a	79	90.909	ENSPMGG00000013112	-	95	84.141	Periophthalmus_magnuspinnatus
ENSAMXG00000035996	srsf1a	95	85.417	ENSPMGG00000005467	-	95	84.348	Periophthalmus_magnuspinnatus
ENSAMXG00000035996	srsf1a	98	93.145	ENSPEMG00000021416	Srsf1	94	91.632	Peromyscus_maniculatus_bairdii
ENSAMXG00000035996	srsf1a	79	93.970	ENSPCIG00000006076	-	94	92.469	Phascolarctos_cinereus
ENSAMXG00000035996	srsf1a	81	88.725	ENSPFOG00000018325	-	84	83.817	Poecilia_formosa
ENSAMXG00000035996	srsf1a	81	88.235	ENSPLAG00000008416	srsf1b	95	83.817	Poecilia_latipinna
ENSAMXG00000035996	srsf1a	51	85.156	ENSPMEG00000020607	-	98	85.156	Poecilia_mexicana
ENSAMXG00000035996	srsf1a	51	85.156	ENSPMEG00000014312	-	98	85.156	Poecilia_mexicana
ENSAMXG00000035996	srsf1a	81	88.235	ENSPMEG00000002388	-	95	83.817	Poecilia_mexicana
ENSAMXG00000035996	srsf1a	79	88.889	ENSPREG00000009667	srsf1a	95	80.753	Poecilia_reticulata
ENSAMXG00000035996	srsf1a	98	93.145	ENSPPYG00000008240	SRSF1	94	91.632	Pongo_abelii
ENSAMXG00000035996	srsf1a	79	92.965	ENSPCAG00000005199	SRSF1	94	91.632	Procavia_capensis
ENSAMXG00000035996	srsf1a	80	75.124	ENSPCOG00000025736	-	94	72.864	Propithecus_coquereli
ENSAMXG00000035996	srsf1a	98	93.145	ENSPCOG00000023654	-	95	95.652	Propithecus_coquereli
ENSAMXG00000035996	srsf1a	52	97.143	ENSPVAG00000000519	-	69	96.774	Pteropus_vampyrus
ENSAMXG00000035996	srsf1a	100	96.429	ENSPNAG00000022241	srsf1a	100	96.429	Pygocentrus_nattereri
ENSAMXG00000035996	srsf1a	79	90.452	ENSPNAG00000014601	srsf1b	94	86.611	Pygocentrus_nattereri
ENSAMXG00000035996	srsf1a	79	92.965	ENSRNOG00000050323	Srsf1	94	91.632	Rattus_norvegicus
ENSAMXG00000035996	srsf1a	98	93.145	ENSRBIG00000034445	-	95	95.652	Rhinopithecus_bieti
ENSAMXG00000035996	srsf1a	98	93.145	ENSRROG00000041506	-	95	95.652	Rhinopithecus_roxellana
ENSAMXG00000035996	srsf1a	98	93.145	ENSSBOG00000025377	-	95	95.652	Saimiri_boliviensis_boliviensis
ENSAMXG00000035996	srsf1a	79	93.970	ENSSHAG00000002552	-	94	92.469	Sarcophilus_harrisii
ENSAMXG00000035996	srsf1a	79	92.965	ENSSFOG00015004800	srsf1a	94	91.632	Scleropages_formosus
ENSAMXG00000035996	srsf1a	79	89.394	ENSSMAG00000007018	-	95	80.753	Scophthalmus_maximus
ENSAMXG00000035996	srsf1a	93	89.873	ENSSMAG00000009719	-	95	88.797	Scophthalmus_maximus
ENSAMXG00000035996	srsf1a	79	89.899	ENSSDUG00000011303	-	95	81.590	Seriola_dumerili
ENSAMXG00000035996	srsf1a	98	77.823	ENSSDUG00000003929	-	82	84.925	Seriola_dumerili
ENSAMXG00000035996	srsf1a	79	89.899	ENSSLDG00000010543	-	95	81.590	Seriola_lalandi_dorsalis
ENSAMXG00000035996	srsf1a	79	76.000	ENSSLDG00000016868	-	93	78.333	Seriola_lalandi_dorsalis
ENSAMXG00000035996	srsf1a	94	75.630	ENSSLDG00000016895	-	77	85.185	Seriola_lalandi_dorsalis
ENSAMXG00000035996	srsf1a	74	93.011	ENSSARG00000010949	-	62	91.398	Sorex_araneus
ENSAMXG00000035996	srsf1a	98	94.355	ENSSPUG00000000804	-	96	94.355	Sphenodon_punctatus
ENSAMXG00000035996	srsf1a	79	89.394	ENSSPAG00000022562	-	95	80.753	Stegastes_partitus
ENSAMXG00000035996	srsf1a	80	89.952	ENSSPAG00000014152	-	95	84.739	Stegastes_partitus
ENSAMXG00000035996	srsf1a	98	93.145	ENSSSCG00000017626	-	94	91.632	Sus_scrofa
ENSAMXG00000035996	srsf1a	55	93.478	ENSTGUG00000008416	-	94	91.573	Taeniopygia_guttata
ENSAMXG00000035996	srsf1a	79	88.384	ENSTRUG00000003691	srsf1a	95	80.335	Takifugu_rubripes
ENSAMXG00000035996	srsf1a	79	88.384	ENSTNIG00000016223	srsf1a	94	80.335	Tetraodon_nigroviridis
ENSAMXG00000035996	srsf1a	74	91.398	ENSTBEG00000015378	-	62	89.785	Tupaia_belangeri
ENSAMXG00000035996	srsf1a	54	91.241	ENSTTRG00000007310	SRSF1	94	89.831	Tursiops_truncatus
ENSAMXG00000035996	srsf1a	79	92.965	ENSUAMG00000009858	SRSF1	94	91.632	Ursus_americanus
ENSAMXG00000035996	srsf1a	98	93.145	ENSUMAG00000000455	-	92	91.632	Ursus_maritimus
ENSAMXG00000035996	srsf1a	79	92.462	ENSVPAG00000010094	SRSF1	94	91.213	Vicugna_pacos
ENSAMXG00000035996	srsf1a	98	93.145	ENSVVUG00000011882	-	92	91.632	Vulpes_vulpes
ENSAMXG00000035996	srsf1a	79	90.452	ENSXETG00000008954	srsf1	95	88.142	Xenopus_tropicalis
ENSAMXG00000035996	srsf1a	79	88.889	ENSXMAG00000011766	srsf1a	95	80.753	Xiphophorus_maculatus