EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000036117 (Gene tree)
Gene ID: 103029171
Gene Symbol: lsm12a
Alias: zgc:85812
Full Name: protein LSM12 homolog A-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 13625 bases
Position: chrAPWO02000101.1:2864359-2877983
Accession: 103029171
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000053460	AD	PF09793.9	1.1e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000039654	-	5153	XM_007228615	ENSAMXP00000053460	215 (aa)	XP_007228677	-

Gene Model

Click here to download ENSAMXG00000036117's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000036117's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000036117	lsm12a	91	84.694	ENSAMXG00000032952	lsm12b	100	84.694

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000036117	lsm12a	91	79.082	ENSG00000161654	LSM12	100	79.082	Homo_sapiens
ENSAMXG00000036117	lsm12a	91	85.714	ENSAPOG00000007907	lsm12b	100	85.714	Acanthochromis_polyacanthus
ENSAMXG00000036117	lsm12a	91	77.387	ENSAMEG00000018321	LSM12	100	77.387	Ailuropoda_melanoleuca
ENSAMXG00000036117	lsm12a	91	85.204	ENSACIG00000008538	lsm12b	100	85.204	Amphilophus_citrinellus
ENSAMXG00000036117	lsm12a	92	86.294	ENSAOCG00000021847	lsm12b	88	86.294	Amphiprion_ocellaris
ENSAMXG00000036117	lsm12a	91	86.224	ENSAPEG00000002252	lsm12b	100	86.224	Amphiprion_percula
ENSAMXG00000036117	lsm12a	91	84.694	ENSATEG00000005705	lsm12b	100	84.694	Anabas_testudineus
ENSAMXG00000036117	lsm12a	91	78.571	ENSACAG00000004618	LSM12	100	78.571	Anolis_carolinensis
ENSAMXG00000036117	lsm12a	91	79.082	ENSANAG00000029011	LSM12	100	81.982	Aotus_nancymaae
ENSAMXG00000036117	lsm12a	91	85.714	ENSACLG00000026332	lsm12b	100	85.714	Astatotilapia_calliptera
ENSAMXG00000036117	lsm12a	91	79.082	ENSBTAG00000016252	LSM12	100	79.082	Bos_taurus
ENSAMXG00000036117	lsm12a	91	79.082	ENSCJAG00000048480	LSM12	100	81.982	Callithrix_jacchus
ENSAMXG00000036117	lsm12a	92	79.188	ENSCAFG00000014379	LSM12	98	76.190	Canis_familiaris
ENSAMXG00000036117	lsm12a	91	79.082	ENSCAFG00020012173	LSM12	100	79.082	Canis_lupus_dingo
ENSAMXG00000036117	lsm12a	91	79.082	ENSCHIG00000018175	LSM12	100	79.082	Capra_hircus
ENSAMXG00000036117	lsm12a	91	79.082	ENSTSYG00000036361	LSM12	100	79.082	Carlito_syrichta
ENSAMXG00000036117	lsm12a	75	76.543	ENSCAPG00000009647	LSM12	89	76.543	Cavia_aperea
ENSAMXG00000036117	lsm12a	91	78.061	ENSCPOG00000012860	LSM12	100	81.081	Cavia_porcellus
ENSAMXG00000036117	lsm12a	91	79.082	ENSCCAG00000032905	LSM12	100	81.982	Cebus_capucinus
ENSAMXG00000036117	lsm12a	91	79.082	ENSCATG00000030577	-	100	81.982	Cercocebus_atys
ENSAMXG00000036117	lsm12a	91	78.571	ENSCLAG00000015759	LSM12	100	81.081	Chinchilla_lanigera
ENSAMXG00000036117	lsm12a	91	78.571	ENSCSAG00000003486	LSM12	100	78.571	Chlorocebus_sabaeus
ENSAMXG00000036117	lsm12a	51	82.569	ENSCHOG00000001198	LSM12	100	82.569	Choloepus_hoffmanni
ENSAMXG00000036117	lsm12a	91	78.571	ENSCPBG00000027105	LSM12	100	78.571	Chrysemys_picta_bellii
ENSAMXG00000036117	lsm12a	91	79.082	ENSCANG00000043328	LSM12	100	81.982	Colobus_angolensis_palliatus
ENSAMXG00000036117	lsm12a	91	79.082	ENSCGRG00001002094	Lsm12	100	81.982	Cricetulus_griseus_chok1gshd
ENSAMXG00000036117	lsm12a	81	72.989	ENSCGRG00000004316	Lsm12	98	72.989	Cricetulus_griseus_crigri
ENSAMXG00000036117	lsm12a	91	85.714	ENSCSEG00000008434	lsm12b	100	85.714	Cynoglossus_semilaevis
ENSAMXG00000036117	lsm12a	91	85.204	ENSCVAG00000008755	lsm12b	100	85.204	Cyprinodon_variegatus
ENSAMXG00000036117	lsm12a	91	84.184	ENSDARG00000109510	lsm12b	100	84.184	Danio_rerio
ENSAMXG00000036117	lsm12a	91	82.653	ENSDARG00000028848	lsm12a	100	82.653	Danio_rerio
ENSAMXG00000036117	lsm12a	92	78.680	ENSDNOG00000002418	LSM12	100	74.884	Dasypus_novemcinctus
ENSAMXG00000036117	lsm12a	91	79.082	ENSDORG00000016381	Lsm12	100	81.982	Dipodomys_ordii
ENSAMXG00000036117	lsm12a	75	34.940	FBgn0030364	Lsm12	80	34.483	Drosophila_melanogaster
ENSAMXG00000036117	lsm12a	67	30.573	FBgn0036057	CG14164	83	30.573	Drosophila_melanogaster
ENSAMXG00000036117	lsm12a	80	69.942	ENSETEG00000011012	-	99	69.942	Echinops_telfairi
ENSAMXG00000036117	lsm12a	91	78.571	ENSETEG00000008374	LSM12	100	78.571	Echinops_telfairi
ENSAMXG00000036117	lsm12a	78	60.479	ENSEBUG00000016299	lsm12a	92	60.479	Eptatretus_burgeri
ENSAMXG00000036117	lsm12a	91	79.082	ENSEASG00005010155	LSM12	100	79.082	Equus_asinus_asinus
ENSAMXG00000036117	lsm12a	91	79.082	ENSECAG00000009071	LSM12	100	81.982	Equus_caballus
ENSAMXG00000036117	lsm12a	71	79.739	ENSEEUG00000002419	-	100	79.739	Erinaceus_europaeus
ENSAMXG00000036117	lsm12a	92	85.279	ENSELUG00000015538	lsm12b	100	80.612	Esox_lucius
ENSAMXG00000036117	lsm12a	91	84.694	ENSELUG00000000256	-	100	84.694	Esox_lucius
ENSAMXG00000036117	lsm12a	91	79.082	ENSFCAG00000037021	LSM12	100	79.082	Felis_catus
ENSAMXG00000036117	lsm12a	84	68.508	ENSFDAG00000008954	LSM12	99	68.508	Fukomys_damarensis
ENSAMXG00000036117	lsm12a	91	86.224	ENSFHEG00000019913	lsm12b	100	86.224	Fundulus_heteroclitus
ENSAMXG00000036117	lsm12a	73	87.342	ENSGMOG00000015449	lsm12b	100	87.342	Gadus_morhua
ENSAMXG00000036117	lsm12a	71	81.046	ENSGALG00000039803	LSM12	100	81.046	Gallus_gallus
ENSAMXG00000036117	lsm12a	91	85.204	ENSGAFG00000011829	lsm12b	100	85.204	Gambusia_affinis
ENSAMXG00000036117	lsm12a	73	87.342	ENSGACG00000003428	lsm12b	100	87.342	Gasterosteus_aculeatus
ENSAMXG00000036117	lsm12a	91	78.571	ENSGAGG00000021965	LSM12	100	78.571	Gopherus_agassizii
ENSAMXG00000036117	lsm12a	91	79.082	ENSGGOG00000010589	-	100	81.982	Gorilla_gorilla
ENSAMXG00000036117	lsm12a	78	85.030	ENSHBUG00000007667	lsm12b	74	85.030	Haplochromis_burtoni
ENSAMXG00000036117	lsm12a	91	79.082	ENSHGLG00000011411	LSM12	100	81.982	Heterocephalus_glaber_female
ENSAMXG00000036117	lsm12a	72	79.870	ENSHGLG00100000241	LSM12	82	79.870	Heterocephalus_glaber_male
ENSAMXG00000036117	lsm12a	91	85.204	ENSHCOG00000002094	lsm12b	100	85.204	Hippocampus_comes
ENSAMXG00000036117	lsm12a	91	83.673	ENSIPUG00000014800	lsm12	100	83.673	Ictalurus_punctatus
ENSAMXG00000036117	lsm12a	91	82.653	ENSIPUG00000008936	lsm12a	100	82.653	Ictalurus_punctatus
ENSAMXG00000036117	lsm12a	91	79.082	ENSSTOG00000007403	LSM12	100	81.982	Ictidomys_tridecemlineatus
ENSAMXG00000036117	lsm12a	88	69.474	ENSJJAG00000011793	-	100	69.474	Jaculus_jaculus
ENSAMXG00000036117	lsm12a	91	78.571	ENSJJAG00000004364	-	100	81.081	Jaculus_jaculus
ENSAMXG00000036117	lsm12a	69	69.799	ENSJJAG00000014652	-	89	69.799	Jaculus_jaculus
ENSAMXG00000036117	lsm12a	78	84.431	ENSKMAG00000007704	lsm12b	56	84.431	Kryptolebias_marmoratus
ENSAMXG00000036117	lsm12a	91	86.735	ENSLBEG00000027999	lsm12b	100	86.735	Labrus_bergylta
ENSAMXG00000036117	lsm12a	91	81.122	ENSLACG00000015981	LSM12	100	81.122	Latimeria_chalumnae
ENSAMXG00000036117	lsm12a	92	82.741	ENSLOCG00000013079	lsm12b	100	82.741	Lepisosteus_oculatus
ENSAMXG00000036117	lsm12a	91	79.082	ENSLAFG00000005202	LSM12	100	79.082	Loxodonta_africana
ENSAMXG00000036117	lsm12a	91	79.082	ENSMFAG00000031376	LSM12	100	81.982	Macaca_fascicularis
ENSAMXG00000036117	lsm12a	91	79.082	ENSMMUG00000006804	LSM12	100	81.982	Macaca_mulatta
ENSAMXG00000036117	lsm12a	91	79.082	ENSMNEG00000030594	-	100	81.982	Macaca_nemestrina
ENSAMXG00000036117	lsm12a	91	79.082	ENSMLEG00000039934	LSM12	100	81.982	Mandrillus_leucophaeus
ENSAMXG00000036117	lsm12a	91	86.735	ENSMAMG00000004279	lsm12b	100	86.735	Mastacembelus_armatus
ENSAMXG00000036117	lsm12a	91	85.714	ENSMZEG00005005754	lsm12b	100	85.714	Maylandia_zebra
ENSAMXG00000036117	lsm12a	91	78.571	ENSMICG00000037219	LSM12	100	81.081	Microcebus_murinus
ENSAMXG00000036117	lsm12a	92	68.020	ENSMOCG00000017015	-	86	68.020	Microtus_ochrogaster
ENSAMXG00000036117	lsm12a	91	79.082	ENSMOCG00000019878	-	100	81.982	Microtus_ochrogaster
ENSAMXG00000036117	lsm12a	91	86.224	ENSMMOG00000020848	lsm12b	100	86.224	Mola_mola
ENSAMXG00000036117	lsm12a	91	85.714	ENSMALG00000007578	lsm12b	100	85.714	Monopterus_albus
ENSAMXG00000036117	lsm12a	91	78.571	MGP_CAROLIEiJ_G0017241	Lsm12	100	81.081	Mus_caroli
ENSAMXG00000036117	lsm12a	91	79.082	ENSMUSG00000020922	Lsm12	100	81.982	Mus_musculus
ENSAMXG00000036117	lsm12a	91	72.770	MGP_PahariEiJ_G0018371	Lsm12	100	81.982	Mus_pahari
ENSAMXG00000036117	lsm12a	91	78.571	MGP_SPRETEiJ_G0018084	Lsm12	99	83.333	Mus_spretus
ENSAMXG00000036117	lsm12a	91	78.571	ENSMLUG00000006391	LSM12	100	78.571	Myotis_lucifugus
ENSAMXG00000036117	lsm12a	91	79.082	ENSNGAG00000001870	Lsm12	100	81.982	Nannospalax_galili
ENSAMXG00000036117	lsm12a	81	56.593	ENSNGAG00000015429	-	94	56.593	Nannospalax_galili
ENSAMXG00000036117	lsm12a	91	85.714	ENSNBRG00000006266	lsm12b	100	85.714	Neolamprologus_brichardi
ENSAMXG00000036117	lsm12a	91	79.082	ENSNLEG00000005580	-	100	81.982	Nomascus_leucogenys
ENSAMXG00000036117	lsm12a	77	77.108	ENSMEUG00000007501	-	100	77.108	Notamacropus_eugenii
ENSAMXG00000036117	lsm12a	91	79.082	ENSOPRG00000008552	LSM12	100	79.082	Ochotona_princeps
ENSAMXG00000036117	lsm12a	90	73.711	ENSODEG00000007886	-	73	73.711	Octodon_degus
ENSAMXG00000036117	lsm12a	91	79.082	ENSODEG00000017998	-	100	79.082	Octodon_degus
ENSAMXG00000036117	lsm12a	91	85.714	ENSONIG00000007933	lsm12b	100	85.714	Oreochromis_niloticus
ENSAMXG00000036117	lsm12a	91	75.385	ENSOCUG00000021254	-	100	75.385	Oryctolagus_cuniculus
ENSAMXG00000036117	lsm12a	91	75.385	ENSOCUG00000027889	-	100	75.385	Oryctolagus_cuniculus
ENSAMXG00000036117	lsm12a	91	75.385	ENSOCUG00000024823	-	100	75.385	Oryctolagus_cuniculus
ENSAMXG00000036117	lsm12a	91	77.387	ENSOCUG00000008566	-	100	77.387	Oryctolagus_cuniculus
ENSAMXG00000036117	lsm12a	91	85.714	ENSORLG00000011310	lsm12b	100	85.714	Oryzias_latipes
ENSAMXG00000036117	lsm12a	92	85.787	ENSORLG00020002060	lsm12b	98	83.173	Oryzias_latipes_hni
ENSAMXG00000036117	lsm12a	92	85.787	ENSORLG00015001647	lsm12b	98	82.692	Oryzias_latipes_hsok
ENSAMXG00000036117	lsm12a	94	82.775	ENSOMEG00000006184	lsm12b	98	82.775	Oryzias_melastigma
ENSAMXG00000036117	lsm12a	91	78.571	ENSOGAG00000010489	LSM12	100	78.571	Otolemur_garnettii
ENSAMXG00000036117	lsm12a	91	76.238	ENSOARG00000006589	LSM12	100	76.238	Ovis_aries
ENSAMXG00000036117	lsm12a	91	70.408	ENSPPAG00000034974	-	100	70.408	Pan_paniscus
ENSAMXG00000036117	lsm12a	91	79.082	ENSPPRG00000023420	LSM12	100	79.082	Panthera_pardus
ENSAMXG00000036117	lsm12a	67	80.180	ENSPTIG00000014850	-	100	80.180	Panthera_tigris_altaica
ENSAMXG00000036117	lsm12a	71	80.392	ENSPTIG00000012704	-	82	80.392	Panthera_tigris_altaica
ENSAMXG00000036117	lsm12a	91	79.082	ENSPTRG00000009261	LSM12	100	81.982	Pan_troglodytes
ENSAMXG00000036117	lsm12a	91	79.082	ENSPANG00000021315	-	100	81.982	Papio_anubis
ENSAMXG00000036117	lsm12a	91	78.571	ENSPKIG00000017932	-	100	78.571	Paramormyrops_kingsleyae
ENSAMXG00000036117	lsm12a	91	86.224	ENSPKIG00000021058	lsm12b	100	86.224	Paramormyrops_kingsleyae
ENSAMXG00000036117	lsm12a	91	84.694	ENSPMGG00000021344	lsm12b	100	84.694	Periophthalmus_magnuspinnatus
ENSAMXG00000036117	lsm12a	91	79.082	ENSPEMG00000012199	Lsm12	100	81.982	Peromyscus_maniculatus_bairdii
ENSAMXG00000036117	lsm12a	81	64.000	ENSPMAG00000005461	lsm12a	99	64.000	Petromyzon_marinus
ENSAMXG00000036117	lsm12a	91	78.061	ENSPCIG00000020244	LSM12	100	78.061	Phascolarctos_cinereus
ENSAMXG00000036117	lsm12a	91	84.694	ENSPFOG00000015930	lsm12b	100	84.694	Poecilia_formosa
ENSAMXG00000036117	lsm12a	91	84.694	ENSPLAG00000021089	lsm12b	100	84.694	Poecilia_latipinna
ENSAMXG00000036117	lsm12a	91	84.694	ENSPMEG00000012961	lsm12b	100	84.694	Poecilia_mexicana
ENSAMXG00000036117	lsm12a	80	86.550	ENSPREG00000010236	lsm12b	95	86.550	Poecilia_reticulata
ENSAMXG00000036117	lsm12a	91	79.082	ENSPPYG00000008344	LSM12	100	79.082	Pongo_abelii
ENSAMXG00000036117	lsm12a	74	78.616	ENSPCAG00000008790	LSM12	100	78.616	Procavia_capensis
ENSAMXG00000036117	lsm12a	91	79.082	ENSPCOG00000027951	LSM12	100	81.982	Propithecus_coquereli
ENSAMXG00000036117	lsm12a	91	79.592	ENSPVAG00000013706	LSM12	100	79.592	Pteropus_vampyrus
ENSAMXG00000036117	lsm12a	91	85.714	ENSPNYG00000003386	lsm12b	100	85.714	Pundamilia_nyererei
ENSAMXG00000036117	lsm12a	91	90.816	ENSPNAG00000018435	lsm12a	100	90.816	Pygocentrus_nattereri
ENSAMXG00000036117	lsm12a	91	84.184	ENSPNAG00000004186	lsm12b	100	84.184	Pygocentrus_nattereri
ENSAMXG00000036117	lsm12a	91	79.082	ENSRNOG00000020894	Lsm12	100	79.082	Rattus_norvegicus
ENSAMXG00000036117	lsm12a	91	79.082	ENSRBIG00000027910	LSM12	100	81.982	Rhinopithecus_bieti
ENSAMXG00000036117	lsm12a	91	79.082	ENSRROG00000045530	-	100	81.982	Rhinopithecus_roxellana
ENSAMXG00000036117	lsm12a	91	79.082	ENSSBOG00000025310	LSM12	100	81.982	Saimiri_boliviensis_boliviensis
ENSAMXG00000036117	lsm12a	73	77.848	ENSSHAG00000014914	LSM12	100	77.848	Sarcophilus_harrisii
ENSAMXG00000036117	lsm12a	91	87.245	ENSSFOG00015009612	lsm12	100	87.245	Scleropages_formosus
ENSAMXG00000036117	lsm12a	91	86.735	ENSSFOG00015020392	lsm12a	100	86.735	Scleropages_formosus
ENSAMXG00000036117	lsm12a	91	85.714	ENSSMAG00000008089	lsm12b	100	85.714	Scophthalmus_maximus
ENSAMXG00000036117	lsm12a	91	85.714	ENSSDUG00000012711	lsm12b	100	85.714	Seriola_dumerili
ENSAMXG00000036117	lsm12a	91	85.714	ENSSLDG00000007404	lsm12b	100	85.714	Seriola_lalandi_dorsalis
ENSAMXG00000036117	lsm12a	71	80.392	ENSSARG00000005537	LSM12	100	80.392	Sorex_araneus
ENSAMXG00000036117	lsm12a	91	78.571	ENSSPUG00000011984	LSM12	100	78.571	Sphenodon_punctatus
ENSAMXG00000036117	lsm12a	91	86.224	ENSSPAG00000017058	lsm12b	100	86.224	Stegastes_partitus
ENSAMXG00000036117	lsm12a	91	79.082	ENSSSCG00000032394	LSM12	100	79.082	Sus_scrofa
ENSAMXG00000036117	lsm12a	91	85.204	ENSTRUG00000007121	lsm12b	100	85.204	Takifugu_rubripes
ENSAMXG00000036117	lsm12a	91	85.714	ENSTNIG00000014436	lsm12b	100	85.714	Tetraodon_nigroviridis
ENSAMXG00000036117	lsm12a	91	75.510	ENSTBEG00000012392	-	100	75.510	Tupaia_belangeri
ENSAMXG00000036117	lsm12a	91	78.571	ENSTBEG00000012523	-	100	78.571	Tupaia_belangeri
ENSAMXG00000036117	lsm12a	91	79.082	ENSTTRG00000010433	LSM12	100	79.082	Tursiops_truncatus
ENSAMXG00000036117	lsm12a	91	79.082	ENSUAMG00000006313	LSM12	100	79.082	Ursus_americanus
ENSAMXG00000036117	lsm12a	73	77.848	ENSUMAG00000012987	LSM12	90	77.848	Ursus_maritimus
ENSAMXG00000036117	lsm12a	91	73.469	ENSVPAG00000011145	LSM12	100	73.469	Vicugna_pacos
ENSAMXG00000036117	lsm12a	91	79.082	ENSVVUG00000017581	LSM12	100	79.082	Vulpes_vulpes
ENSAMXG00000036117	lsm12a	74	57.500	ENSXETG00000003371	lsm12	77	57.500	Xenopus_tropicalis
ENSAMXG00000036117	lsm12a	91	85.204	ENSXCOG00000003994	lsm12b	100	85.204	Xiphophorus_couchianus
ENSAMXG00000036117	lsm12a	91	85.204	ENSXMAG00000020950	lsm12b	100	85.204	Xiphophorus_maculatus