EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000036881 (Gene tree)
Gene ID: 103036301
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 23688 bases
Position: chr12:19425117-19448804
Accession: 103036301
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000053298	RRM_1	PF00076.22	3e-32	1	2
ENSAMXP00000053298	RRM_1	PF00076.22	3e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000041638	-	5475	XM_022674835	ENSAMXP00000053298	530 (aa)	XP_022530556	UPI000BBD8D0A

Gene Model

Click here to download ENSAMXG00000036881's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000036881's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000036881	pspc1	75	61.713	ENSAMXG00000033933	nono	87	57.426
ENSAMXG00000036881	pspc1	75	60.652	ENSAMXG00000011538	sfpq	63	59.268

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000036881	pspc1	80	73.103	ENSG00000121390	PSPC1	82	79.573	Homo_sapiens
ENSAMXG00000036881	pspc1	100	68.556	ENSAPOG00000015946	pspc1	100	68.190	Acanthochromis_polyacanthus
ENSAMXG00000036881	pspc1	84	70.524	ENSAMEG00000017420	PSPC1	88	68.542	Ailuropoda_melanoleuca
ENSAMXG00000036881	pspc1	100	61.922	ENSACIG00000018695	pspc1	100	59.083	Amphilophus_citrinellus
ENSAMXG00000036881	pspc1	100	67.772	ENSAOCG00000005279	pspc1	100	66.971	Amphiprion_ocellaris
ENSAMXG00000036881	pspc1	100	68.333	ENSAPEG00000015927	pspc1	100	67.593	Amphiprion_percula
ENSAMXG00000036881	pspc1	100	56.827	ENSATEG00000004878	pspc1	100	56.831	Anabas_testudineus
ENSAMXG00000036881	pspc1	67	68.451	ENSAPLG00000003643	SFPQ	67	65.634	Anas_platyrhynchos
ENSAMXG00000036881	pspc1	77	70.167	ENSAPLG00000006246	PSPC1	100	71.838	Anas_platyrhynchos
ENSAMXG00000036881	pspc1	99	64.000	ENSACAG00000002093	PSPC1	99	61.922	Anolis_carolinensis
ENSAMXG00000036881	pspc1	68	61.496	ENSACAG00000013307	-	56	61.035	Anolis_carolinensis
ENSAMXG00000036881	pspc1	83	71.681	ENSANAG00000000059	PSPC1	98	67.337	Aotus_nancymaae
ENSAMXG00000036881	pspc1	100	59.815	ENSACLG00000027220	pspc1	100	56.881	Astatotilapia_calliptera
ENSAMXG00000036881	pspc1	100	65.441	ENSBTAG00000003934	PSPC1	91	67.959	Bos_taurus
ENSAMXG00000036881	pspc1	83	71.681	ENSCJAG00000004554	PSPC1	99	63.736	Callithrix_jacchus
ENSAMXG00000036881	pspc1	80	73.103	ENSCAFG00020002009	PSPC1	82	79.573	Canis_lupus_dingo
ENSAMXG00000036881	pspc1	100	65.441	ENSCHIG00000016708	PSPC1	91	67.959	Capra_hircus
ENSAMXG00000036881	pspc1	76	63.373	ENSTSYG00000032882	PSPC1	88	62.590	Carlito_syrichta
ENSAMXG00000036881	pspc1	81	71.847	ENSCPOG00000000395	PSPC1	98	70.886	Cavia_porcellus
ENSAMXG00000036881	pspc1	83	71.460	ENSCCAG00000033498	PSPC1	99	63.553	Cebus_capucinus
ENSAMXG00000036881	pspc1	80	72.874	ENSCATG00000036434	PSPC1	89	79.573	Cercocebus_atys
ENSAMXG00000036881	pspc1	70	71.688	ENSCLAG00000005241	PSPC1	92	67.916	Chinchilla_lanigera
ENSAMXG00000036881	pspc1	82	68.009	ENSCHOG00000008913	PSPC1	99	60.000	Choloepus_hoffmanni
ENSAMXG00000036881	pspc1	99	65.926	ENSCPBG00000020859	PSPC1	99	66.914	Chrysemys_picta_bellii
ENSAMXG00000036881	pspc1	55	59.794	ENSCSAVG00000003533	-	52	61.372	Ciona_savignyi
ENSAMXG00000036881	pspc1	70	58.839	ENSCANG00000018948	PSPC1	87	79.851	Colobus_angolensis_palliatus
ENSAMXG00000036881	pspc1	100	64.630	ENSCGRG00001018368	Pspc1	88	68.958	Cricetulus_griseus_chok1gshd
ENSAMXG00000036881	pspc1	100	64.630	ENSCGRG00000011724	Pspc1	88	68.958	Cricetulus_griseus_crigri
ENSAMXG00000036881	pspc1	100	62.362	ENSCVAG00000007679	-	100	61.993	Cyprinodon_variegatus
ENSAMXG00000036881	pspc1	100	77.024	ENSDARG00000006621	pspc1	100	77.805	Danio_rerio
ENSAMXG00000036881	pspc1	89	69.753	ENSDNOG00000011078	PSPC1	99	63.803	Dasypus_novemcinctus
ENSAMXG00000036881	pspc1	100	62.637	ENSDORG00000016050	Pspc1	90	65.650	Dipodomys_ordii
ENSAMXG00000036881	pspc1	55	81.188	ENSETEG00000000502	-	60	81.188	Echinops_telfairi
ENSAMXG00000036881	pspc1	90	56.301	ENSEBUG00000003964	-	64	66.942	Eptatretus_burgeri
ENSAMXG00000036881	pspc1	56	45.062	ENSEBUG00000010133	pspc1	75	47.387	Eptatretus_burgeri
ENSAMXG00000036881	pspc1	88	70.231	ENSEASG00005000119	PSPC1	99	63.858	Equus_asinus_asinus
ENSAMXG00000036881	pspc1	88	70.231	ENSECAG00000017286	PSPC1	99	63.858	Equus_caballus
ENSAMXG00000036881	pspc1	100	77.449	ENSELUG00000003746	pspc1	100	76.895	Esox_lucius
ENSAMXG00000036881	pspc1	80	73.333	ENSFCAG00000027841	PSPC1	82	79.573	Felis_catus
ENSAMXG00000036881	pspc1	99	66.605	ENSFALG00000008750	PSPC1	99	67.636	Ficedula_albicollis
ENSAMXG00000036881	pspc1	88	68.399	ENSFDAG00000002617	PSPC1	92	70.988	Fukomys_damarensis
ENSAMXG00000036881	pspc1	100	63.100	ENSGMOG00000015074	pspc1	100	63.100	Gadus_morhua
ENSAMXG00000036881	pspc1	99	66.296	ENSGALG00000017142	PSPC1	99	67.161	Gallus_gallus
ENSAMXG00000036881	pspc1	74	69.095	ENSGAFG00000006327	pspc1	81	69.095	Gambusia_affinis
ENSAMXG00000036881	pspc1	88	68.162	ENSGACG00000014901	pspc1	95	73.837	Gasterosteus_aculeatus
ENSAMXG00000036881	pspc1	99	65.613	ENSGAGG00000019164	PSPC1	99	66.914	Gopherus_agassizii
ENSAMXG00000036881	pspc1	67	67.887	ENSGAGG00000017325	-	62	59.762	Gopherus_agassizii
ENSAMXG00000036881	pspc1	80	73.103	ENSGGOG00000003414	PSPC1	82	79.573	Gorilla_gorilla
ENSAMXG00000036881	pspc1	100	68.843	ENSHBUG00000001139	pspc1	100	68.022	Haplochromis_burtoni
ENSAMXG00000036881	pspc1	92	66.667	ENSHGLG00000018811	PSPC1	99	64.457	Heterocephalus_glaber_female
ENSAMXG00000036881	pspc1	62	73.952	ENSHGLG00100007962	PSPC1	92	80.667	Heterocephalus_glaber_male
ENSAMXG00000036881	pspc1	77	68.127	ENSHCOG00000013251	pspc1	95	63.657	Hippocampus_comes
ENSAMXG00000036881	pspc1	100	88.679	ENSIPUG00000013192	pspc1	100	88.679	Ictalurus_punctatus
ENSAMXG00000036881	pspc1	100	64.088	ENSSTOG00000026833	PSPC1	98	70.529	Ictidomys_tridecemlineatus
ENSAMXG00000036881	pspc1	80	72.874	ENSJJAG00000018334	Pspc1	99	63.187	Jaculus_jaculus
ENSAMXG00000036881	pspc1	89	57.660	ENSKMAG00000013525	-	88	67.463	Kryptolebias_marmoratus
ENSAMXG00000036881	pspc1	97	63.956	ENSLBEG00000004474	pspc1	98	61.749	Labrus_bergylta
ENSAMXG00000036881	pspc1	100	65.930	ENSLACG00000010762	PSPC1	100	67.035	Latimeria_chalumnae
ENSAMXG00000036881	pspc1	100	71.852	ENSLOCG00000010832	pspc1	99	71.507	Lepisosteus_oculatus
ENSAMXG00000036881	pspc1	82	72.160	ENSLAFG00000010968	PSPC1	99	65.201	Loxodonta_africana
ENSAMXG00000036881	pspc1	80	72.874	ENSMFAG00000032728	PSPC1	91	79.394	Macaca_fascicularis
ENSAMXG00000036881	pspc1	80	72.874	ENSMMUG00000020262	PSPC1	87	79.331	Macaca_mulatta
ENSAMXG00000036881	pspc1	80	72.874	ENSMNEG00000027401	PSPC1	85	74.939	Macaca_nemestrina
ENSAMXG00000036881	pspc1	68	72.386	ENSMLEG00000039043	PSPC1	94	67.225	Mandrillus_leucophaeus
ENSAMXG00000036881	pspc1	100	64.065	ENSMAMG00000004333	pspc1	100	64.801	Mastacembelus_armatus
ENSAMXG00000036881	pspc1	100	59.815	ENSMZEG00005005726	pspc1	100	56.881	Maylandia_zebra
ENSAMXG00000036881	pspc1	78	70.071	ENSMGAG00000015134	PSPC1	100	71.734	Meleagris_gallopavo
ENSAMXG00000036881	pspc1	87	63.057	ENSMAUG00000021067	Pspc1	85	66.341	Mesocricetus_auratus
ENSAMXG00000036881	pspc1	91	70.122	ENSMICG00000013970	PSPC1	98	71.139	Microcebus_murinus
ENSAMXG00000036881	pspc1	83	70.575	ENSMOCG00000006060	Pspc1	99	63.370	Microtus_ochrogaster
ENSAMXG00000036881	pspc1	94	41.541	ENSMMOG00000004352	pspc1	61	52.161	Mola_mola
ENSAMXG00000036881	pspc1	82	71.269	ENSMODG00000008029	PSPC1	78	65.010	Monodelphis_domestica
ENSAMXG00000036881	pspc1	100	66.231	ENSMALG00000008914	pspc1	100	65.672	Monopterus_albus
ENSAMXG00000036881	pspc1	88	68.293	MGP_CAROLIEiJ_G0019341	Pspc1	99	68.565	Mus_caroli
ENSAMXG00000036881	pspc1	82	72.889	ENSMUSG00000021938	Pspc1	99	68.565	Mus_musculus
ENSAMXG00000036881	pspc1	90	69.919	MGP_PahariEiJ_G0030359	Pspc1	99	68.565	Mus_pahari
ENSAMXG00000036881	pspc1	87	68.354	MGP_SPRETEiJ_G0020232	Pspc1	99	68.565	Mus_spretus
ENSAMXG00000036881	pspc1	80	73.103	ENSMPUG00000013347	PSPC1	88	68.542	Mustela_putorius_furo
ENSAMXG00000036881	pspc1	88	68.542	ENSMLUG00000017663	PSPC1	90	67.276	Myotis_lucifugus
ENSAMXG00000036881	pspc1	90	69.919	ENSNGAG00000011271	Pspc1	99	64.457	Nannospalax_galili
ENSAMXG00000036881	pspc1	74	65.578	ENSNBRG00000014059	pspc1	91	64.394	Neolamprologus_brichardi
ENSAMXG00000036881	pspc1	80	73.103	ENSNLEG00000001294	PSPC1	88	68.542	Nomascus_leucogenys
ENSAMXG00000036881	pspc1	67	74.882	ENSMEUG00000000476	PSPC1	84	64.528	Notamacropus_eugenii
ENSAMXG00000036881	pspc1	89	60.288	ENSODEG00000007817	-	99	55.474	Octodon_degus
ENSAMXG00000036881	pspc1	89	63.655	ENSODEG00000019012	-	99	60.110	Octodon_degus
ENSAMXG00000036881	pspc1	100	69.963	ENSONIG00000012010	pspc1	99	68.819	Oreochromis_niloticus
ENSAMXG00000036881	pspc1	82	55.180	ENSOANG00000011381	-	91	53.138	Ornithorhynchus_anatinus
ENSAMXG00000036881	pspc1	68	72.922	ENSOANG00000009017	-	100	71.084	Ornithorhynchus_anatinus
ENSAMXG00000036881	pspc1	81	72.297	ENSOCUG00000006153	PSPC1	99	63.620	Oryctolagus_cuniculus
ENSAMXG00000036881	pspc1	100	63.803	ENSORLG00000004232	-	100	59.889	Oryzias_latipes
ENSAMXG00000036881	pspc1	96	65.970	ENSORLG00020000578	PSPC1	97	61.036	Oryzias_latipes_hni
ENSAMXG00000036881	pspc1	100	64.587	ENSORLG00015017480	pspc1	100	60.926	Oryzias_latipes_hsok
ENSAMXG00000036881	pspc1	83	71.715	ENSOGAG00000012643	PSPC1	99	63.388	Otolemur_garnettii
ENSAMXG00000036881	pspc1	87	69.133	ENSOARG00000014163	PSPC1	95	68.908	Ovis_aries
ENSAMXG00000036881	pspc1	80	64.598	ENSPPAG00000009836	PSPC1	91	79.573	Pan_paniscus
ENSAMXG00000036881	pspc1	80	73.333	ENSPPRG00000008833	PSPC1	88	68.750	Panthera_pardus
ENSAMXG00000036881	pspc1	68	72.654	ENSPTIG00000016917	PSPC1	84	67.464	Panthera_tigris_altaica
ENSAMXG00000036881	pspc1	81	72.540	ENSPTRG00000005677	PSPC1	82	79.573	Pan_troglodytes
ENSAMXG00000036881	pspc1	80	72.874	ENSPANG00000001992	PSPC1	89	79.394	Papio_anubis
ENSAMXG00000036881	pspc1	100	74.766	ENSPKIG00000003578	pspc1	100	72.067	Paramormyrops_kingsleyae
ENSAMXG00000036881	pspc1	99	65.556	ENSPSIG00000005168	PSPC1	99	66.914	Pelodiscus_sinensis
ENSAMXG00000036881	pspc1	66	66.759	ENSPMGG00000015135	pspc1	98	65.634	Periophthalmus_magnuspinnatus
ENSAMXG00000036881	pspc1	82	71.556	ENSPEMG00000015214	Pspc1	99	63.736	Peromyscus_maniculatus_bairdii
ENSAMXG00000036881	pspc1	54	44.631	ENSPMAG00000004618	pspc1	79	46.538	Petromyzon_marinus
ENSAMXG00000036881	pspc1	83	71.460	ENSPCIG00000017680	PSPC1	100	62.976	Phascolarctos_cinereus
ENSAMXG00000036881	pspc1	97	65.966	ENSPFOG00000003362	pspc1	98	65.392	Poecilia_formosa
ENSAMXG00000036881	pspc1	100	64.991	ENSPLAG00000011540	pspc1	100	64.432	Poecilia_latipinna
ENSAMXG00000036881	pspc1	100	64.991	ENSPMEG00000008322	pspc1	100	64.432	Poecilia_mexicana
ENSAMXG00000036881	pspc1	100	64.618	ENSPREG00000007786	pspc1	100	64.060	Poecilia_reticulata
ENSAMXG00000036881	pspc1	80	72.644	ENSPPYG00000005186	PSPC1	97	68.776	Pongo_abelii
ENSAMXG00000036881	pspc1	68	74.556	ENSPCAG00000008314	-	66	79.290	Procavia_capensis
ENSAMXG00000036881	pspc1	91	66.599	ENSPCOG00000014364	PSPC1	99	60.806	Propithecus_coquereli
ENSAMXG00000036881	pspc1	88	69.602	ENSPVAG00000005036	PSPC1	99	63.904	Pteropus_vampyrus
ENSAMXG00000036881	pspc1	100	59.815	ENSPNYG00000008893	pspc1	100	56.881	Pundamilia_nyererei
ENSAMXG00000036881	pspc1	100	90.019	ENSPNAG00000016511	pspc1	100	90.019	Pygocentrus_nattereri
ENSAMXG00000036881	pspc1	88	67.480	ENSRNOG00000020782	Pspc1	99	68.776	Rattus_norvegicus
ENSAMXG00000036881	pspc1	83	71.681	ENSRBIG00000036057	PSPC1	94	77.713	Rhinopithecus_bieti
ENSAMXG00000036881	pspc1	83	71.681	ENSRROG00000036334	PSPC1	98	70.380	Rhinopithecus_roxellana
ENSAMXG00000036881	pspc1	79	58.508	ENSSBOG00000028172	PSPC1	90	76.241	Saimiri_boliviensis_boliviensis
ENSAMXG00000036881	pspc1	83	65.487	ENSSHAG00000004696	PSPC1	99	59.347	Sarcophilus_harrisii
ENSAMXG00000036881	pspc1	88	79.368	ENSSFOG00015001395	pspc1	99	76.569	Scleropages_formosus
ENSAMXG00000036881	pspc1	100	68.762	ENSSMAG00000001761	pspc1	100	67.276	Scophthalmus_maximus
ENSAMXG00000036881	pspc1	100	65.653	ENSSDUG00000010651	pspc1	100	66.489	Seriola_dumerili
ENSAMXG00000036881	pspc1	100	59.218	ENSSLDG00000004284	pspc1	100	59.041	Seriola_lalandi_dorsalis
ENSAMXG00000036881	pspc1	81	65.376	ENSSARG00000000888	PSPC1	89	62.917	Sorex_araneus
ENSAMXG00000036881	pspc1	87	51.812	ENSSPUG00000001136	-	52	57.183	Sphenodon_punctatus
ENSAMXG00000036881	pspc1	99	55.535	ENSSPUG00000008550	PSPC1	99	56.169	Sphenodon_punctatus
ENSAMXG00000036881	pspc1	100	66.787	ENSSPAG00000001921	pspc1	100	66.606	Stegastes_partitus
ENSAMXG00000036881	pspc1	80	73.563	ENSSSCG00000009569	PSPC1	83	79.635	Sus_scrofa
ENSAMXG00000036881	pspc1	88	71.310	ENSTGUG00000011295	PSPC1	99	72.765	Taeniopygia_guttata
ENSAMXG00000036881	pspc1	100	61.152	ENSTRUG00000011335	pspc1	100	58.303	Takifugu_rubripes
ENSAMXG00000036881	pspc1	97	62.308	ENSTNIG00000010358	pspc1	97	58.724	Tetraodon_nigroviridis
ENSAMXG00000036881	pspc1	88	57.595	ENSTBEG00000002361	PSPC1	67	72.414	Tupaia_belangeri
ENSAMXG00000036881	pspc1	92	67.066	ENSTTRG00000003343	PSPC1	89	69.182	Tursiops_truncatus
ENSAMXG00000036881	pspc1	58	78.526	ENSUAMG00000012309	PSPC1	81	83.099	Ursus_americanus
ENSAMXG00000036881	pspc1	85	70.259	ENSUMAG00000013993	PSPC1	90	79.268	Ursus_maritimus
ENSAMXG00000036881	pspc1	76	69.398	ENSVPAG00000010029	PSPC1	100	67.225	Vicugna_pacos
ENSAMXG00000036881	pspc1	80	73.103	ENSVVUG00000006414	PSPC1	84	79.573	Vulpes_vulpes
ENSAMXG00000036881	pspc1	74	68.342	ENSXCOG00000017438	pspc1	92	68.593	Xiphophorus_couchianus
ENSAMXG00000036881	pspc1	74	68.342	ENSXMAG00000007929	pspc1	92	68.593	Xiphophorus_maculatus