EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000037622 (Gene tree)
Gene ID: 103032086
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 4481 bases
Position: chr5:24468246-24472726
Accession: 103032086
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000041918	LSM	PF01423.22	4.6e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000030335	-	3294	XM_015602249	ENSAMXP00000041918	103 (aa)	XP_015457735	W5L8F9

Gene Model

Click here to download ENSAMXG00000037622's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03018	RNA degradation	KEGG
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000037622's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000037622	lsm7	69	36.620	ENSAMXG00000030568	snrpg	83	36.620

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000037622	lsm7	100	95.146	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSAMXG00000037622	lsm7	91	97.872	ENSAPOG00000015573	lsm7	81	97.872	Acanthochromis_polyacanthus
ENSAMXG00000037622	lsm7	100	92.233	ENSAMEG00000005484	LSM7	100	92.233	Ailuropoda_melanoleuca
ENSAMXG00000037622	lsm7	95	96.939	ENSACIG00000006498	lsm7	78	96.939	Amphilophus_citrinellus
ENSAMXG00000037622	lsm7	99	97.059	ENSAOCG00000001077	lsm7	92	98.020	Amphiprion_ocellaris
ENSAMXG00000037622	lsm7	100	98.058	ENSAPEG00000000694	lsm7	100	98.058	Amphiprion_percula
ENSAMXG00000037622	lsm7	100	96.117	ENSAPEG00000024447	lsm7	92	98.020	Amphiprion_percula
ENSAMXG00000037622	lsm7	100	98.058	ENSATEG00000008557	lsm7	100	98.058	Anabas_testudineus
ENSAMXG00000037622	lsm7	100	95.146	ENSANAG00000037196	-	100	95.146	Aotus_nancymaae
ENSAMXG00000037622	lsm7	100	86.408	ENSANAG00000022222	-	100	86.408	Aotus_nancymaae
ENSAMXG00000037622	lsm7	100	97.087	ENSACLG00000021021	lsm7	100	97.087	Astatotilapia_calliptera
ENSAMXG00000037622	lsm7	100	95.146	ENSBTAG00000004521	LSM7	100	95.146	Bos_taurus
ENSAMXG00000037622	lsm7	97	59.000	WBGene00003081	lsm-7	96	59.000	Caenorhabditis_elegans
ENSAMXG00000037622	lsm7	54	94.643	ENSCJAG00000039713	-	68	94.643	Callithrix_jacchus
ENSAMXG00000037622	lsm7	98	94.059	ENSCAFG00000019409	LSM7	98	94.059	Canis_familiaris
ENSAMXG00000037622	lsm7	98	94.059	ENSCAFG00020018168	LSM7	74	95.000	Canis_lupus_dingo
ENSAMXG00000037622	lsm7	100	93.204	ENSCHIG00000023663	LSM7	100	93.204	Capra_hircus
ENSAMXG00000037622	lsm7	69	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSAMXG00000037622	lsm7	100	95.146	ENSCPOG00000014025	LSM7	100	95.146	Cavia_porcellus
ENSAMXG00000037622	lsm7	98	95.050	ENSCCAG00000035456	LSM7	99	95.050	Cebus_capucinus
ENSAMXG00000037622	lsm7	100	95.146	ENSCATG00000023543	LSM7	100	95.146	Cercocebus_atys
ENSAMXG00000037622	lsm7	100	95.146	ENSCLAG00000011635	LSM7	100	95.146	Chinchilla_lanigera
ENSAMXG00000037622	lsm7	100	95.146	ENSCSAG00000011599	LSM7	100	95.146	Chlorocebus_sabaeus
ENSAMXG00000037622	lsm7	71	94.521	ENSCPBG00000021317	LSM7	78	94.521	Chrysemys_picta_bellii
ENSAMXG00000037622	lsm7	93	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSAMXG00000037622	lsm7	100	95.146	ENSCANG00000035525	LSM7	100	95.146	Colobus_angolensis_palliatus
ENSAMXG00000037622	lsm7	87	84.444	ENSCGRG00001016005	-	92	84.444	Cricetulus_griseus_chok1gshd
ENSAMXG00000037622	lsm7	100	94.175	ENSCGRG00001000807	-	100	94.175	Cricetulus_griseus_chok1gshd
ENSAMXG00000037622	lsm7	87	84.444	ENSCGRG00000006821	-	92	84.444	Cricetulus_griseus_crigri
ENSAMXG00000037622	lsm7	98	94.059	ENSCGRG00000014355	-	97	94.059	Cricetulus_griseus_crigri
ENSAMXG00000037622	lsm7	98	98.020	ENSCSEG00000014900	lsm7	86	98.020	Cynoglossus_semilaevis
ENSAMXG00000037622	lsm7	98	97.030	ENSCVAG00000021091	lsm7	94	97.030	Cyprinodon_variegatus
ENSAMXG00000037622	lsm7	100	97.087	ENSDARG00000058328	lsm7	100	97.087	Danio_rerio
ENSAMXG00000037622	lsm7	99	93.137	ENSDORG00000024460	Lsm7	100	93.137	Dipodomys_ordii
ENSAMXG00000037622	lsm7	94	75.510	FBgn0261068	LSm7	89	75.510	Drosophila_melanogaster
ENSAMXG00000037622	lsm7	98	92.079	ENSETEG00000012788	LSM7	99	92.079	Echinops_telfairi
ENSAMXG00000037622	lsm7	100	83.495	ENSEBUG00000016992	lsm7	99	83.495	Eptatretus_burgeri
ENSAMXG00000037622	lsm7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSAMXG00000037622	lsm7	100	91.262	ENSECAG00000001440	LSM7	66	91.262	Equus_caballus
ENSAMXG00000037622	lsm7	100	94.175	ENSFCAG00000003445	LSM7	100	94.175	Felis_catus
ENSAMXG00000037622	lsm7	98	96.040	ENSFALG00000011912	LSM7	100	96.040	Ficedula_albicollis
ENSAMXG00000037622	lsm7	93	94.792	ENSFDAG00000007661	LSM7	100	94.792	Fukomys_damarensis
ENSAMXG00000037622	lsm7	98	97.030	ENSFHEG00000006349	lsm7	90	97.030	Fundulus_heteroclitus
ENSAMXG00000037622	lsm7	100	94.175	ENSGMOG00000013320	lsm7	100	94.175	Gadus_morhua
ENSAMXG00000037622	lsm7	100	97.087	ENSGAFG00000013902	lsm7	100	97.087	Gambusia_affinis
ENSAMXG00000037622	lsm7	100	95.146	ENSGACG00000010390	lsm7	100	95.146	Gasterosteus_aculeatus
ENSAMXG00000037622	lsm7	100	95.146	ENSGGOG00000010172	LSM7	100	95.146	Gorilla_gorilla
ENSAMXG00000037622	lsm7	100	97.087	ENSHBUG00000004616	lsm7	100	97.087	Haplochromis_burtoni
ENSAMXG00000037622	lsm7	100	95.146	ENSHGLG00000010587	LSM7	100	95.146	Heterocephalus_glaber_female
ENSAMXG00000037622	lsm7	100	95.146	ENSHGLG00100000852	LSM7	100	95.146	Heterocephalus_glaber_male
ENSAMXG00000037622	lsm7	98	97.030	ENSHCOG00000020252	lsm7	100	97.030	Hippocampus_comes
ENSAMXG00000037622	lsm7	100	98.058	ENSIPUG00000024724	lsm7	100	98.058	Ictalurus_punctatus
ENSAMXG00000037622	lsm7	98	95.050	ENSSTOG00000028372	LSM7	99	95.050	Ictidomys_tridecemlineatus
ENSAMXG00000037622	lsm7	97	95.000	ENSJJAG00000001936	Lsm7	97	95.000	Jaculus_jaculus
ENSAMXG00000037622	lsm7	100	97.087	ENSKMAG00000022151	lsm7	100	97.087	Kryptolebias_marmoratus
ENSAMXG00000037622	lsm7	100	97.087	ENSLBEG00000005203	lsm7	100	97.087	Labrus_bergylta
ENSAMXG00000037622	lsm7	90	95.699	ENSLACG00000015700	LSM7	100	94.175	Latimeria_chalumnae
ENSAMXG00000037622	lsm7	98	97.030	ENSLOCG00000004356	lsm7	98	97.030	Lepisosteus_oculatus
ENSAMXG00000037622	lsm7	98	95.050	ENSLAFG00000029302	LSM7	98	95.050	Loxodonta_africana
ENSAMXG00000037622	lsm7	100	95.146	ENSMFAG00000044572	LSM7	100	95.146	Macaca_fascicularis
ENSAMXG00000037622	lsm7	100	95.146	ENSMMUG00000000452	LSM7	100	95.146	Macaca_mulatta
ENSAMXG00000037622	lsm7	100	95.146	ENSMNEG00000004393	LSM7	100	95.146	Macaca_nemestrina
ENSAMXG00000037622	lsm7	100	95.146	ENSMLEG00000030852	LSM7	100	95.146	Mandrillus_leucophaeus
ENSAMXG00000037622	lsm7	100	97.087	ENSMAMG00000005410	lsm7	100	97.087	Mastacembelus_armatus
ENSAMXG00000037622	lsm7	100	97.087	ENSMZEG00005028055	lsm7	100	97.087	Maylandia_zebra
ENSAMXG00000037622	lsm7	100	97.087	ENSMGAG00000000750	LSM7	89	97.087	Meleagris_gallopavo
ENSAMXG00000037622	lsm7	100	94.175	ENSMAUG00000009276	Lsm7	100	94.175	Mesocricetus_auratus
ENSAMXG00000037622	lsm7	100	94.175	ENSMICG00000009988	-	100	94.175	Microcebus_murinus
ENSAMXG00000037622	lsm7	100	95.146	ENSMICG00000028619	-	100	95.146	Microcebus_murinus
ENSAMXG00000037622	lsm7	100	94.175	ENSMOCG00000016925	Lsm7	100	94.175	Microtus_ochrogaster
ENSAMXG00000037622	lsm7	100	98.058	ENSMMOG00000019645	lsm7	98	98.058	Mola_mola
ENSAMXG00000037622	lsm7	100	96.117	ENSMODG00000004722	LSM7	100	96.117	Monodelphis_domestica
ENSAMXG00000037622	lsm7	100	97.087	ENSMALG00000014511	lsm7	79	97.087	Monopterus_albus
ENSAMXG00000037622	lsm7	99	94.118	MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	Mus_caroli
ENSAMXG00000037622	lsm7	99	94.118	ENSMUSG00000035215	Lsm7	99	94.118	Mus_musculus
ENSAMXG00000037622	lsm7	99	94.118	MGP_PahariEiJ_G0031020	Lsm7	99	94.118	Mus_pahari
ENSAMXG00000037622	lsm7	99	94.118	MGP_SPRETEiJ_G0016425	Lsm7	99	94.118	Mus_spretus
ENSAMXG00000037622	lsm7	99	89.216	ENSMLUG00000024002	-	94	89.216	Myotis_lucifugus
ENSAMXG00000037622	lsm7	100	92.233	ENSMLUG00000013097	-	100	92.233	Myotis_lucifugus
ENSAMXG00000037622	lsm7	100	93.204	ENSNGAG00000021637	Lsm7	100	93.204	Nannospalax_galili
ENSAMXG00000037622	lsm7	98	97.030	ENSNBRG00000015770	lsm7	87	97.030	Neolamprologus_brichardi
ENSAMXG00000037622	lsm7	91	97.872	ENSNBRG00000001237	-	82	95.146	Neolamprologus_brichardi
ENSAMXG00000037622	lsm7	100	95.146	ENSNLEG00000002265	LSM7	100	95.146	Nomascus_leucogenys
ENSAMXG00000037622	lsm7	100	95.146	ENSODEG00000013590	-	100	95.146	Octodon_degus
ENSAMXG00000037622	lsm7	100	88.350	ENSODEG00000018769	-	100	88.350	Octodon_degus
ENSAMXG00000037622	lsm7	100	75.728	ENSODEG00000008190	-	100	75.728	Octodon_degus
ENSAMXG00000037622	lsm7	100	97.087	ENSONIG00000001801	lsm7	89	97.087	Oreochromis_niloticus
ENSAMXG00000037622	lsm7	100	98.058	ENSORLG00000023951	lsm7	100	98.058	Oryzias_latipes
ENSAMXG00000037622	lsm7	100	98.058	ENSORLG00020022226	lsm7	100	98.058	Oryzias_latipes_hni
ENSAMXG00000037622	lsm7	100	96.117	ENSORLG00015020044	lsm7	94	98.020	Oryzias_latipes_hsok
ENSAMXG00000037622	lsm7	100	98.058	ENSOMEG00000012806	lsm7	100	98.058	Oryzias_melastigma
ENSAMXG00000037622	lsm7	100	83.495	ENSOGAG00000024373	-	100	83.495	Otolemur_garnettii
ENSAMXG00000037622	lsm7	98	93.069	ENSOGAG00000000144	-	99	93.069	Otolemur_garnettii
ENSAMXG00000037622	lsm7	100	93.204	ENSOARG00000014013	LSM7	100	93.204	Ovis_aries
ENSAMXG00000037622	lsm7	100	95.146	ENSPPAG00000026500	LSM7	100	95.146	Pan_paniscus
ENSAMXG00000037622	lsm7	100	94.175	ENSPPRG00000008624	LSM7	100	94.175	Panthera_pardus
ENSAMXG00000037622	lsm7	98	94.059	ENSPTIG00000016252	LSM7	98	94.059	Panthera_tigris_altaica
ENSAMXG00000037622	lsm7	100	95.146	ENSPTRG00000010233	LSM7	100	95.146	Pan_troglodytes
ENSAMXG00000037622	lsm7	100	95.146	ENSPANG00000020668	LSM7	100	95.146	Papio_anubis
ENSAMXG00000037622	lsm7	100	98.058	ENSPKIG00000011325	lsm7	100	98.058	Paramormyrops_kingsleyae
ENSAMXG00000037622	lsm7	98	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSAMXG00000037622	lsm7	100	98.058	ENSPMGG00000006498	lsm7	100	98.058	Periophthalmus_magnuspinnatus
ENSAMXG00000037622	lsm7	100	96.117	ENSPCIG00000030454	LSM7	100	96.117	Phascolarctos_cinereus
ENSAMXG00000037622	lsm7	100	94.175	ENSPFOG00000012467	lsm7	91	94.175	Poecilia_formosa
ENSAMXG00000037622	lsm7	100	94.175	ENSPLAG00000000252	lsm7	94	95.098	Poecilia_latipinna
ENSAMXG00000037622	lsm7	100	94.175	ENSPMEG00000000587	lsm7	94	95.098	Poecilia_mexicana
ENSAMXG00000037622	lsm7	78	76.543	ENSPREG00000016718	lsm7	65	76.543	Poecilia_reticulata
ENSAMXG00000037622	lsm7	71	94.521	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSAMXG00000037622	lsm7	100	95.146	ENSPCOG00000017177	LSM7	100	95.146	Propithecus_coquereli
ENSAMXG00000037622	lsm7	100	97.087	ENSPNYG00000006938	lsm7	100	97.087	Pundamilia_nyererei
ENSAMXG00000037622	lsm7	100	100.000	ENSPNAG00000010141	lsm7	100	100.000	Pygocentrus_nattereri
ENSAMXG00000037622	lsm7	99	95.098	ENSRNOG00000019552	Lsm7	99	95.098	Rattus_norvegicus
ENSAMXG00000037622	lsm7	100	95.146	ENSRBIG00000035978	LSM7	100	95.146	Rhinopithecus_bieti
ENSAMXG00000037622	lsm7	100	95.146	ENSRROG00000034044	LSM7	100	95.146	Rhinopithecus_roxellana
ENSAMXG00000037622	lsm7	83	48.315	YNL147W	-	77	48.315	Saccharomyces_cerevisiae
ENSAMXG00000037622	lsm7	100	95.146	ENSSBOG00000034899	LSM7	100	95.146	Saimiri_boliviensis_boliviensis
ENSAMXG00000037622	lsm7	100	96.117	ENSSFOG00015006728	lsm7	100	96.117	Scleropages_formosus
ENSAMXG00000037622	lsm7	100	96.117	ENSSMAG00000004195	lsm7	93	98.020	Scophthalmus_maximus
ENSAMXG00000037622	lsm7	100	98.058	ENSSDUG00000001863	lsm7	100	98.058	Seriola_dumerili
ENSAMXG00000037622	lsm7	100	98.058	ENSSLDG00000016339	lsm7	100	98.058	Seriola_lalandi_dorsalis
ENSAMXG00000037622	lsm7	100	98.058	ENSSPAG00000015221	lsm7	100	98.058	Stegastes_partitus
ENSAMXG00000037622	lsm7	98	95.050	ENSSSCG00000013463	LSM7	99	95.050	Sus_scrofa
ENSAMXG00000037622	lsm7	98	96.040	ENSTGUG00000000067	LSM7	100	96.040	Taeniopygia_guttata
ENSAMXG00000037622	lsm7	100	97.087	ENSTRUG00000022913	lsm7	100	97.087	Takifugu_rubripes
ENSAMXG00000037622	lsm7	100	97.087	ENSTNIG00000015525	lsm7	100	97.087	Tetraodon_nigroviridis
ENSAMXG00000037622	lsm7	68	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSAMXG00000037622	lsm7	100	92.233	ENSUAMG00000000912	LSM7	86	92.233	Ursus_americanus
ENSAMXG00000037622	lsm7	98	94.059	ENSUMAG00000006556	LSM7	78	95.000	Ursus_maritimus
ENSAMXG00000037622	lsm7	69	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSAMXG00000037622	lsm7	98	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSAMXG00000037622	lsm7	99	96.078	ENSXCOG00000002572	lsm7	100	96.078	Xiphophorus_couchianus
ENSAMXG00000037622	lsm7	100	97.087	ENSXMAG00000018630	lsm7	100	97.087	Xiphophorus_maculatus